ID: uc003xoh.2_intron_11_0_chr8_41548118_r.3p
GENE: (15)
chr8:41548068-41548317-


(1)
B-CELL
(1)
BRAIN
(2)
BREAST
(2)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(3)
OTHER
(3)
SKIN
(1)
XRN.ip

Sense strand
AAGTCGGGAAGCATGCCTCATTGATCACAATTTTGGAAATAAAGCCTTTCCCAAAACAAACAGTGGATTTCTCAGCACACACCCGCATGCCTCTTGCTGAGGCAGGGTGTGTCTTGGAGAGGGAAGGACCGAAGGTGGAAGGAGGGACATCTGGGCCCTTCTCTCCCTGACAAGCTGTATCTGCTTTTCCTCTCCTGCAGGTGTTGGAAGGAATGTCCCTGTTTGCAGAACTCTCTGGGAACCTGGTGCC
............................................................................................((..((((((((.....))))))))..)).......((..(((((..........))))).))...............................................................................................
............................................................................................93.............................................................156............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR189782SRR040039(GSM532924)
G531T. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040008(GSM532893)
G727N. (cervix)
TAX577590(Rovira)
total RNA. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.................................................................................................TGAGGCAGGGTGTGTGGTT......................................................................................................................................1928.000.0024.004.00----------------
.................................................................................................TGAGGCAGGGTGTGTAGTT......................................................................................................................................198.000.008.00-----------------
.................................................................................................TGAGGCAGGGTGTGTGGGT......................................................................................................................................193.000.003.00-----------------
.................................................................................................TGAGGCAGGGTGTGTAGGT......................................................................................................................................193.000.003.00-----------------
.....................................................................................................................................GGTGGAAGGAGGGACGATA..................................................................................................191.000.00--1.00---------------
..........................................................................................CTCTTGCTGAGGCAGGCATG............................................................................................................................................201.000.00---------1.00--------
.................................................................................................TGAGGCAGGGTGTGTTGTT......................................................................................................................................191.000.001.00-----------------
.................................................................................................TGAGGCAGGGTGTGTAATT......................................................................................................................................191.000.001.00-----------------
.....................................................................................................................................GGTGGAAGGAGGGACGATG..................................................................................................191.000.00-----1.00------------
..................................................................................................................................GAAGGTGGAAGGAGGTGTG.....................................................................................................191.000.00--------1.00---------
.................................................................................................TGAGGCAGGGTGTGTAGAT......................................................................................................................................191.000.001.00-----------------
.................................................................................................TGAGGCAGGGTGTGTGGT.......................................................................................................................................181.000.00------------1.00-----
.................................................................................................TGAGGCAGGGTGTGTAGA.......................................................................................................................................181.000.001.00-----------------
.....................................................................................................................................GGTGGAAGGAGGGACGGTC..................................................................................................191.000.00--1.00---------------
.................................................................................................TGAGGCAGGGTGTGTAGT.......................................................................................................................................181.000.001.00-----------------
.....................................................................................................................................GGTGGAAGGAGGGACGA....................................................................................................171.000.00-------1.00----------
.................................................................................................TGAGGCAGGGTGTGTGGTC......................................................................................................................................191.000.001.00-----------------
.....................................................................................................................AGAGGGAAGGACCGA......................................................................................................................1530.670.67-------------0.67----
.....................................................................................................................................................TCTGGGCCCTTCTCTCCCTGA................................................................................2120.500.50---------------0.50--
..............................................................................................................................................................................................................................TTGCAGAACTCTCTG.............1590.110.11-----------------0.11

Antisense strand
AAGTCGGGAAGCATGCCTCATTGATCACAATTTTGGAAATAAAGCCTTTCCCAAAACAAACAGTGGATTTCTCAGCACACACCCGCATGCCTCTTGCTGAGGCAGGGTGTGTCTTGGAGAGGGAAGGACCGAAGGTGGAAGGAGGGACATCTGGGCCCTTCTCTCCCTGACAAGCTGTATCTGCTTTTCCTCTCCTGCAGGTGTTGGAAGGAATGTCCCTGTTTGCAGAACTCTCTGGGAACCTGGTGCC
............................................................................................((..((((((((.....))))))))..)).......((..(((((..........))))).))...............................................................................................
............................................................................................93.............................................................156............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR189782SRR040039(GSM532924)
G531T. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR040008(GSM532893)
G727N. (cervix)
TAX577590(Rovira)
total RNA. (breast)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
......................................................................................................................................................................................................................GTCCCTGTTTGCAGATCGG................. 191.000.00----1.00-------------
.........................................................AAACAGTGGATTTCTAGT............................................................................................................................................................................... 181.000.00---1.00--------------
....................................................................................................................................AGGTGGAAGGAGGGAATTT................................................................................................... 191.000.00------1.00-----------
.................................TGGAAATAAAGCCTTTCA....................................................................................................................................................................................................... 181.000.00---1.00--------------
.......................................................................TCAGCACACACCCGCCGG................................................................................................................................................................. 181.000.00-----------1.00------
...............................................................................................................GGTCCTTCCCTCTCCAAGA........................................................................................................................ 1911.001.00----------1.00-------
.........................................................................................................................................................GTCAGGGAGAGAAGGGCC............................................................................... 1820.500.50--------------0.50---
...............................................................................................................................................................GCTTGTCAGGGAGAGA........................................................................... 1640.250.25----------------0.25-