ID: uc003xhl.2_intron_1_0_chr8_29196019_r.5p
GENE: (3)
chr8:29197415-29197664-


(2)
AGO2.ip
(1)
AGO3.ip
(5)
B-CELL
(7)
BREAST
(16)
CELL-LINE
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(3)
LIVER
(4)
OTHER
(9)
SKIN
(3)
UTERUS

Sense strand
AGCCCTTGGACCTGGGCTGCAGCTCCTGTGGGACCCCACTACACGACCAGGTAGACTCGGGGGGCAGGGCTTGGAAGTGGGGGGCAGGAACAGCGTAGGGGCCAGTGGATGCCTTCTTTTCAGAGTTCTGACGGTGTTTTTTGTCTTTGCTTTTGAGACAGTCTTGCTCTGTCACCCAGGAGTGCAGTGGTGTGATCATAGCTTACTGCAGCCTCGAACTCCTGGGCTCAAGGGATCCTCCCTGGTAGCT
................................................................................................................................((((((.((...(((((((.......)))))))....)).))))))............................................................................
.................................................................................................................114....................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925PAZD5SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................TTCAGAGTTCTGACGATC..................................................................................................................1823.000.00---5.003.003.003.00---1.002.00----1.00--------1.001.00---1.00---1.001.00--------------
..............................................................................................................................................................CAGTCTTGCTCTGTCACCCATGA.....................................................................235.000.00--4.00------1.00----------------------------------------
......................................................................................................................TTCAGAGTTCTGACGAT...................................................................................................................175.000.00-------3.002.00-----------------------------------------
......................................................................................................................................................................................................TAGCTTACTGCAGCCTCGAACTCCTGGGCG......................303.000.00-3.00------------------------------------------------
......TGGACCTGGGCTGCAGCTCC................................................................................................................................................................................................................................2012.002.00---------------------1.00------------------1.00---------
........................................................................................................................................TTTTTTGTCTTTGCTTTTTAC.............................................................................................212.000.002.00-------------------------------------------------
.........................................................................................................................................................................TGTCACCCAGGAGTGCAGCGGC...........................................................222.000.002.00-------------------------------------------------
..................................................GTAGACTCGGGGGGCAGGGCTTGGAAGGGGG.........................................................................................................................................................................311.000.00-------------------------------------------1.00------
.........................CTGTGGGACCCCACTACACGAC...........................................................................................................................................................................................................2211.001.00------------------------1.00-------------------------
......................................................................................................................................................................................................................CGAACTCCTGGGCTCAAGGGATTTCC..........261.000.00---------------------------1.00----------------------
.........................................................................................................................................................................TGTCACCCAGGAGTGCAGGGG............................................................211.000.001.00-------------------------------------------------
.................................................................................................................................................................................................................AGCCTCGAACTCCTGGGCCAAG...................221.000.00-1.00------------------------------------------------
....................................................................................................................................................................TGCTCTGTCACCCAGGAGTGCAGCGA............................................................261.000.00-1.00------------------------------------------------
......................................................................................................................TTCAGAGTTCTGACGTC...................................................................................................................171.000.00----------1.00---------------------------------------
.............................................ACCAGGTAGACTCGGGGGG..........................................................................................................................................................................................1911.001.00----------------------------1.00---------------------
................CTGCAGCTCCTGTGGGACCC......................................................................................................................................................................................................................2011.001.00-----1.00--------------------------------------------
..................GCAGCTCCTGTGGGACCCCAC...................................................................................................................................................................................................................2111.001.00--------------1.00-----------------------------------
........................................................................................................................................TTTTTTGTCTTTGCTTTTGAGACGG.........................................................................................251.000.001.00-------------------------------------------------
.........................................................................................................................................TTTTTGTCTTTGCTTGGCG..............................................................................................191.000.001.00-------------------------------------------------
.......................................................................................................................TCAGAGTTCTGACGGATC.................................................................................................................181.000.00----1.00---------------------------------------------
.........................................................................................................................................................................TGTCACCCAGGAGTGCAGCGG............................................................211.000.001.00-------------------------------------------------
...............................................................................................................................................................AGTCTTGCTCTGTCACCCAGGAGTGCAGCGG............................................................311.000.001.00-------------------------------------------------
................................................................................................................................................................................................TGATCATAGCTTACTGCAGCCTCCA.................................251.000.00--------------------------------------1.00-----------
................CTGCAGCTCCTGTGGGACC.......................................................................................................................................................................................................................1911.001.00--------------------1.00-----------------------------
...................................................................................................................................................................TTGCTCTGTCACCCAGGAGTGCAGCGGC...........................................................281.000.00-1.00------------------------------------------------
.......................TCCTGTGGGACCCCACTACACG.............................................................................................................................................................................................................2211.001.00-------------------------------------1.00------------
..........................................................................................................................................................................................................TTACTGCAGCCTCGAACTCCCGGC........................241.000.00-1.00------------------------------------------------
............................................................................GTGGGGGGCAGGAACTCTG...........................................................................................................................................................191.000.00-----------------------------1.00--------------------
.....................................................GACTCGGGGGGCAGGGCTTGGGGG.............................................................................................................................................................................241.000.00-------------1.00------------------------------------
...................................................................................................................................................................TTGCTCTGTCACCCAGGACTGT.................................................................221.000.00--1.00-----------------------------------------------
..............................................................................................................................................................................................................................TGGGCTCAAGGGATCCTCTAT.......211.000.00------------------1.00-------------------------------
.......................................................................................GAACAGCGTAGGGGCCAGTGGATGCCTTCA.....................................................................................................................................301.000.00---------------------------------------1.00----------
.................................................GGTAGACTCGGGGGGGAC.......................................................................................................................................................................................181.000.00------------1.00-------------------------------------
....CTTGGACCTGGGCTGC......................................................................................................................................................................................................................................1630.330.33--------------------------------------------0.33-----
...............................................................................................................................CTGACGGTGTTTTTT............................................................................................................1550.200.20----------------------------------------------0.20---

Antisense strand
AGCCCTTGGACCTGGGCTGCAGCTCCTGTGGGACCCCACTACACGACCAGGTAGACTCGGGGGGCAGGGCTTGGAAGTGGGGGGCAGGAACAGCGTAGGGGCCAGTGGATGCCTTCTTTTCAGAGTTCTGACGGTGTTTTTTGTCTTTGCTTTTGAGACAGTCTTGCTCTGTCACCCAGGAGTGCAGTGGTGTGATCATAGCTTACTGCAGCCTCGAACTCCTGGGCTCAAGGGATCCTCCCTGGTAGCT
................................................................................................................................((((((.((...(((((((.......)))))))....)).))))))............................................................................
.................................................................................................................114....................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925PAZD5SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR038858(GSM458541)
MEL202. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038863(GSM458546)
MM603. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR038856(GSM458539)
D11. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................................................CTGCAGCCTCGAACTCCTGGGCTCGA................... 261.000.00--1.00-----------------------------------------------
.......................TCCTGTGGGACCCCAAG.................................................................................................................................................................................................................. 171.000.00-----------------1.00--------------------------------
.......................................................................................................................................................................................................................GAACTCCTGGGCTCAAGGGATCCTCCCTGCAGG.. 331.000.00-1.00------------------------------------------------
............................................................................................................................................................................................................ACTGCAGCCTCGAACTCCTGGGCTCT.................... 261.000.00---------1.00----------------------------------------
.....................................................................................................................TTTCAGAGTTCTGACTCTG.................................................................................................................. 191.000.00-----------------------------------------1.00--------
..................................................................................................................TCTTTTCAGAGTTCTGAG...................................................................................................................... 181.000.00--------------------------------1.00-----------------
.............................................................................................................................................................................................................CTGCAGCCTCGAACTCCTGGGCTCACTAG................ 291.000.001.00-------------------------------------------------
................................................................................................................................................................................................................CAGCCTCGAACTCCTACGT....................... 191.000.00------------------------------------------1.00-------
............................................................................................................................................................................................................ACTGCAGCCTCGAACTCCTGTAT....................... 231.000.00-------------------------------1.00------------------
.............................................................................................................................................................................................................CTGCAGCCTCGAACTCCTGGGCTCACGGG................ 291.000.00-1.00------------------------------------------------
..........................................................................................................................................................................GTCACCCAGGAGTGCAGTGGTGGGCT...................................................... 261.000.00--1.00-----------------------------------------------
.................................CCCCACTACACGACCCCGC...................................................................................................................................................................................................... 191.000.00------------------------------------1.00-------------
.............................................................................................................................................................................................................CAGGAGTTCGAGGCTGCAG.......................... 1901.001.00-----------------------1.00--------------------------
..........................................................................................................................................................................................................TTACTGCAGCCTCGAACAA............................. 191.000.00---------------1.00----------------------------------
...............................................................................................................................................................................CCAGGAGTGCAGTGGTGTCA....................................................... 201.000.001.00-------------------------------------------------
............................................................................................................................................................................................................ACTGCAGCCTCGAACTCCTGGGCTTGGG.................. 281.000.00-1.00------------------------------------------------
.............................................................................................................................................................................................................CTGCAGCCTCGAACTCCTGGGCTAAT................... 261.000.00----------------------1.00---------------------------
.............................................................................................................................................................................................................AGCCCAGGAGTTCGAGGCTGCAG...................... 2301.001.00-------------------1.00------------------------------
................................................................................................................................................................................................................CAGCCTCGAACTCCTGGGCTCTGGA................. 251.000.00---------------------------------1.00----------------
......................................................................................TGGCCCCTACGCTGTTCC.................................................................................................................................................. 1820.500.50------------0.50-------------------------------------
................................................................................................................AGAACTCTGAAAAGAAG......................................................................................................................... 1740.250.25---------------------------------------------0.25----
..................................................................................................................CAGAACTCTGAAAAGA........................................................................................................................ 1660.170.17-----------------------------------------------0.17--
....CAGCCCAGGTCCAAG....................................................................................................................................................................................................................................... 1570.140.14------------------------------------------------0.14-
..........................................................................................................................................................................ACACCACTGCACTCCTGGGTGAC......................................................... 2370.140.140.14-------------------------------------------------
.......................................................................................................................................AAGCAAAGACAAAAAAC.................................................................................................. 1770.140.14-------------------------------------------------0.14