ID: uc003xau.1_intron_4_0_chr8_21997597_r
GENE: REEP4(3)
chr8:21997547-21997734-


(1)
AGO2.ip 		(6)
B-CELL 		(5)
BREAST 		(7)
CELL-LINE 		(2)
HEART 		(5)
HELA 		(6)
OTHER 		(10)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTTGCACTCTTCATGGCAGCAGAGATCGTTACAGACATTTTTATCTCCTGGTATGGACGCAGGGTCCGCAAGCCATGGGTCAGGGGTGGCCCCCCCAGCCCTGCTCCTTGGCTCACCCTGCCCCTTGTGCTGTGACAGGTTCCCTTTCTACTATGAGATCAAGATGGCCTTCGTGCTGTGGCTGCTCT
.....................................................(((((.....)))))..(((((.((..(((((.(((.....))).)))))..)).)))))...........................................................................
..................................................51.................................................................118....................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189782SRR189786SRR189784SRR553576(SRX182782)
source: Testis. (testes)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335SRR038857(GSM458540)
D20. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GTATGGACGCAGGGTCCGCAAGCCATGGGTCAGGGGTGGCCCCCCCAGCCCTGCTCCTTGGCTCACCCTGCCCCTTGTGCTGTGACAG..................................................88122.0022.0011.0011.00----------------------------------------
..................................................GTATGGACGCAGGGTCCGCAAGCCATGGGTCAGGGGTGGCCCCCCCAGCCCTGCTCCTTGGCTCACCCTGCCCCTTGTGCTGTGAC....................................................86117.0017.0016.00----------------------------1.00------------
..................................................GTATGGACGCAGGGTCCGCAAGCCATGGGTCAGGGGTGGCCCCCCCAGCCCTGCTCCTTGGCTCACCCTGCCCCTTGTGCTGTGA.....................................................85114.0014.0014.00-----------------------------------------
..................................................GTATGGACGCAGGGTCCGCAAGCCATGGGTCAGGGGTGGCCCCCCCAGCCCTGCTCCTTGGCTCACCCTGCCCCTTGTGCTGTG......................................................8416.006.006.00-----------------------------------------
...................................................TATGGACGCAGGGTCCGCAAGCC..................................................................................................................2313.003.00----3.00-------------------------------------
.................AGCAGAGATCGTTACAGACA.......................................................................................................................................................2012.002.00--2.00---------------------------------------
..............GGCAGCAGAGATCGTTACAGACAT......................................................................................................................................................2412.002.00---2.00--------------------------------------
....................AGAGATCGTTACAGACATTAT...................................................................................................................................................212.000.00---2.00--------------------------------------
...................................................TATGGACGCAGGGTCCG........................................................................................................................1712.002.00-------2.00----------------------------------
..............................................................GGTCCGCAAGCCATGGGTCAGG........................................................................................................2212.002.00------------1.00-----------------1.00-----------
...................CAGAGATCGTTACAGACATTTTT..................................................................................................................................................2312.002.00------2.00-----------------------------------
...................CAGAGATCGTTACAGACAT......................................................................................................................................................1912.002.00-----2.00------------------------------------
..................GCAGAGATCGTTACAGACA.......................................................................................................................................................1912.002.00--1.00--1.00------------------------------------
....................................................................................................................................................TACTATGAGATCAAGATGGCCTTCGTG.............2711.001.00----------------------------1.00-------------
..................GCAGAGATCGTTACAGCCA.......................................................................................................................................................191.000.00-----1.00------------------------------------
........................ATCGTTACAGACATTTTTATCCCC............................................................................................................................................241.000.00--------1.00---------------------------------
...................................................TATGGACGCAGGGTCCGCAAGCCATGGGTCAGGGGTGGCCCCCCCAGCCCTGCTCCTTG..............................................................................5911.001.00------------------------------------1.00-----
..............GGCAGCAGAGATCGTTAC............................................................................................................................................................1811.001.00-----------------------1.00------------------
................................................................................................................................................................AAGATGGCCTTCGTGCTGT.........1911.001.00---------------------------1.00--------------
......................................................................................................................................................CTATGAGATCAAGATGGCCTTC................2211.001.00---------1.00--------------------------------
............ATGGCAGCAGAGATCGTT..............................................................................................................................................................1811.001.00----1.00-------------------------------------
................................................................................................AGCCCTGCTCCTTGGCTCA.........................................................................1911.001.00----------------------1.00-------------------
...............GCAGCAGAGATCGTTACAGACATTTTTAT................................................................................................................................................2911.001.00---------------------1.00--------------------
............................................................................................................................................................GATCAAGATGGCCTTCGTGCTGTGGCT.....2711.001.00---------------------------------1.00--------
..................................ACATTTTTATCTCCTAATT.......................................................................................................................................191.000.00--------------------------------------1.00---
.TTGCACTCTTCATGGCAGCAGAGATCGT...............................................................................................................................................................2811.001.00----------1.00-------------------------------
..................................................GTATGGACGCAGGGT...........................................................................................................................1521.001.00----------------------------------------0.500.50
..................................................GTATGGACGCAGGGTC..........................................................................................................................1611.001.00--------------1.00---------------------------
....................AGAGATCGTTACAGACATTT....................................................................................................................................................2011.001.00------1.00-----------------------------------
...............GCAGCAGAGATCGTTACAGACAT......................................................................................................................................................2311.001.00---1.00--------------------------------------
..................................................GTATGGACGCAGGGTCCGCAAGCCACGGG.............................................................................................................291.000.00--------1.00---------------------------------
...................................................TATGGACGCAGGGTCCGCAAGCCATGGGTCAGGGGTGGCCCCCCCAGCCCTG.....................................................................................5211.001.001.00-----------------------------------------
...................................................TATGGACGCAGGGTCCGCAAGC...................................................................................................................2211.001.00--------------------------1.00---------------
...................................................TATGGACGCAGGGTCCGCAAGCCATG...............................................................................................................2611.001.00---------1.00--------------------------------
...................................................TATGGACGCAGGGTCCGCA......................................................................................................................1911.001.00------------------------1.00-----------------
.......TCTTCATGGCAGCAGAGATCGTTACAGAC........................................................................................................................................................2911.001.00-------------1.00----------------------------
.................AGCAGAGATCGTTACAGA.........................................................................................................................................................1811.001.00--1.00---------------------------------------
.............TGGCAGCAGAGATCGTTACAGACATTTTT..................................................................................................................................................2911.001.00----------------------------------1.00-------
...............................................................................TCAGGGGTGGCCCCCCCGCCA........................................................................................211.000.00--------------------------------1.00---------
..................................................GTATGGACGCAGGGTCCC........................................................................................................................181.000.00-------1.00----------------------------------
...................................................TATGGACGCAGGGTCCGCAAGCCA.................................................................................................................2411.001.00--------1.00---------------------------------
..................................................................................................................................................TCTACTATGAGATCAAGATGGCCTTCGTGC............3011.001.00----------1.00-------------------------------
.TTGCACTCTTCATGGCAGCAGAGATCG................................................................................................................................................................2711.001.00-----------1.00------------------------------
.......................................................................................................CTCCTTGGCTCACCCTG....................................................................1711.001.00---------------1.00--------------------------
.................AGCAGAGATCGTTACAGACATTT....................................................................................................................................................2311.001.00---------------------------------------1.00--
.................AGCAGAGATCGTTACAGAC........................................................................................................................................................1911.001.00--1.00---------------------------------------
..................................................................................................................................................TCTACTATGAGATCAAGATGG.....................2111.001.00-----------------------------------1.00------
...............GCAGCAGAGATCGTTACAGACATT.....................................................................................................................................................2411.001.00--1.00---------------------------------------
..................GCAGAGATCGTTACAGACATT.....................................................................................................................................................2111.001.00-------------------1.00----------------------
...........CATGGCAGCAGAGATCGT...............................................................................................................................................................1811.001.00------------------1.00-----------------------
...............GCAGCAGAGATCGTTACAGA.........................................................................................................................................................2011.001.00-------------------------1.00----------------
....................................................................CAAGCCATGGGTCAGGGGTG....................................................................................................2011.001.00-------------------------------1.00----------

Antisense strand
TTTGCACTCTTCATGGCAGCAGAGATCGTTACAGACATTTTTATCTCCTGGTATGGACGCAGGGTCCGCAAGCCATGGGTCAGGGGTGGCCCCCCCAGCCCTGCTCCTTGGCTCACCCTGCCCCTTGTGCTGTGACAGGTTCCCTTTCTACTATGAGATCAAGATGGCCTTCGTGCTGTGGCTGCTCT
.....................................................(((((.....)))))..(((((.((..(((((.(((.....))).)))))..)).)))))...........................................................................
..................................................51.................................................................118....................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189782SRR189786SRR189784SRR553576(SRX182782)
source: Testis. (testes)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335SRR038857(GSM458540)
D20. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................GCCCTGCTCCTTGGCTGTTT....................................................................... 201.000.00----------------1.00-------------------------
.................................................................................AGGGGTGGCCCCCCCCCC......................................................................................... 181.000.00-------------------------------------1.00----
.............................................................................................................GGCTCACCCTGCCCCGAC............................................................. 181.000.00--------------------1.00---------------------