ID: uc003xas.2_intron_6_0_chr8_21977687_r
GENE: (12)
chr8:21977637-21977904-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(17)
B-CELL
(2)
BRAIN
(5)
BREAST
(9)
CELL-LINE
(4)
CERVIX
(1)
FIBROBLAST
(3)
LIVER
(1)
OTHER
(25)
SKIN
(1)
UTERUS

Sense strand
CAGCAGCCTGGGCAGCACAACATTCTGGGAGGGCTTCTCCTGGCCTGAGCGTAAGTGTCCCCAACACAGGGGAGAGGGAGCTGGGAGCCCAAGCCCTAGGGATCGGGTGGCAGAGGAGTCCCAGGGTGACCCCGAGGGGCTGGAAGCAGGTGTTGCTGCCGCCGGGGCAGGGGCTTCAGGGCTGAGGAGGCCAATGGCCGTTCTGTCTCCTCCTGTAGTTCGCCCAAAGTCAGACGAGGGCTCTGTCCTCCTGCTGCACCGAGCTTTG
..........................................................................................(((((((.....((.((((((((...((((((.(((....)))..))))))...(((....))).)))))))).))...)))))))(((((..((((.((((...))))......)))).))))).....................................................
..........................................................................................91.............................................................................................................................218................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR189784SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040042(GSM532927)
G428N. (cervix)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR040027(GSM532912)
G220T. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
...............................................................................................CTAGGGATCGGGTGGTGTT..........................................................................................................................................................191121.001.0058.005.008.008.008.00-2.005.002.003.003.00------2.00--2.001.00-2.00-1.00----1.00---1.00-----1.00--1.00-1.00--1.00--1.001.00----------1.001.001.00--------
...............................................................................................CTAGGGATCGGGTGGTGT...........................................................................................................................................................18146.001.0022.00--1.00--2.003.003.001.001.00-3.00-1.00-------1.00--1.00-------1.00-1.001.00-1.00----------------1.00----1.00-----1.00-------
...............................................................................................CTAGGGATCGGGTGGTG............................................................................................................................................................17133.001.003.008.00---8.004.00----3.00-2.001.00---1.00--1.00---------------1.00----------------1.00-------------------
......................................................................................................................................................................................................CGTTCTGTCTCCTCCTGTAGA.................................................2115.002.00------------------------1.00----------------------------1.00--1.00-1.00--1.00------------
...............................................................................................CTAGGGATCGGGTGGTTT...........................................................................................................................................................1814.001.002.00--------1.00----------------1.00-----------------------------------------------
................................................................................................TAGGGATCGGGTGGCGTTT.........................................................................................................................................................193.000.001.00-1.00-1.00---------------------------------------------------------------------
......................................................................................................................................................................................................CGTTCTGTCTCCTCCTGTAG..................................................2012.002.00-------------------------------1.001.00-----------------------------------------
.....................................................................................................................................................................................................CCGTTCTGTCTCCTCCTGTAG..................................................2112.002.00---------------2.00----------------------------------------------------------
........................................................................AGAGGGAGCTGGGAGCCTG.................................................................................................................................................................................191.000.00---------------------------------------------------------1.00----------------
.................................................................ACAGGGGAGAGGGAGCCTGT.......................................................................................................................................................................................201.000.00-------------------------------------------------------------------1.00------
...............................................................................................................................................................................................CAATGGCCGTTCTGTCTCCTCCTGTAG..................................................2711.001.00---------------------------1.00----------------------------------------------
...............................................................................................CTAGGGATCGGGTGGT.............................................................................................................................................................1611.001.00----------------1.00---------------------------------------------------------
...................................................................AGGGGAGAGGGAGCTGGGAGCGTC.................................................................................................................................................................................241.000.00-------------------------------------------------1.00------------------------
...............................................................................................CTAGGGATCGGGTGGTGC...........................................................................................................................................................1811.001.001.00-------------------------------------------------------------------------
.............................................................................................................................................................GCCGCCGGGGCAGGGCGA.............................................................................................181.000.00----------------------------1.00---------------------------------------------
..............................................................................................................................................................................................................................CCCAAAGTCAGACGATC.............................171.000.00-----------------------------------------------1.00--------------------------
...............................................................................................CTAGGGATCGGGTGGGGGG..........................................................................................................................................................1911.001.001.00-------------------------------------------------------------------------
...............................................................................................CTAGGGATCGGGTGGTGGT..........................................................................................................................................................1911.001.001.00-------------------------------------------------------------------------
...............................................................................................CTAGGGATCGGGTGG..............................................................................................................................................................1511.001.00----------------1.00---------------------------------------------------------
...............................................................................................CTAGGGATCGGGTGGTTTT..........................................................................................................................................................1911.001.001.00-------------------------------------------------------------------------
...............................................................................................CTAGGGATCGGGTGGTGCT..........................................................................................................................................................1911.001.00--------------------------1.00-----------------------------------------------
...CAGCCTGGGCAGCACAGGC......................................................................................................................................................................................................................................................191.000.00------------------1.00-------------------------------------------------------
...............................................................................................CTAGGGATCGGGTGGTGTC..........................................................................................................................................................1911.001.001.00-------------------------------------------------------------------------
...............................................................................................CTAGGGATCGGGTGGCGTT..........................................................................................................................................................1911.001.001.00-------------------------------------------------------------------------
.....................................................................................................................................GAGGGGCTGGAAGCAAAAC....................................................................................................................191.000.00--------------------------------------------1.00-----------------------------
...............................................................................................CTAGGGATCGGGTGGC.............................................................................................................................................................1611.001.001.00-------------------------------------------------------------------------
...............................................................................................CTAGGGATCGGGTGGGGT...........................................................................................................................................................1811.001.00--------1.00-----------------------------------------------------------------
..................................................................................................................................................................................................TGGCCGTTCTGTCTCCTCCTGTAGA.................................................251.000.00-------------------1.00------------------------------------------------------
.......................................................................................................CGGGTGGCAGAGGAGTAGGG.................................................................................................................................................201.000.00----------------------------------------------1.00---------------------------
.......................................................................................................................................................................................................GTTCTGTCTCCTCCTGTAG..................................................1911.001.00------------------------1.00-------------------------------------------------
.....................................................................................................................................................................................CTGAGGAGGCCAATGTTC.....................................................................181.000.00-----------------------------1.00--------------------------------------------
..............................................................................................................................................................................................................................CCCAAAGTCAGACGAGCCG...........................191.000.00--------------------------------------------------------------1.00-----------
.................................................................................................................................................................................................................................................TCTGTCCTCCTGCTGTGG.........181.000.00---------------------------------------1.00----------------------------------
.......................................................................................................................................................GTTGCTGCCGCCGGGGTC...................................................................................................181.000.00-------------------1.00------------------------------------------------------
.................................................................................................................................................................................................................................AAAGTCAGACGAGGGCTCTGT......................2111.001.00----------------------1.00---------------------------------------------------
...............................................................................................CTAGGGATCGGGTGGAGTT..........................................................................................................................................................1911.001.001.00-------------------------------------------------------------------------
.....................................................................................................................................GAGGGGCTGGAAGCAGGTGTTG.................................................................................................................2211.001.00--------------------------------------------------1.00-----------------------
......................................................................................................................................................................................................................................CAGACGAGGGCTCTG.......................1540.250.25--------------------------------------------------------------------0.25-----
........................................................................................................GGGTGGCAGAGGAGTC....................................................................................................................................................1670.140.14---------------------------0.14----------------------------------------------
................................GCTTCTCCTGGCCTGAGC..........................................................................................................................................................................................................................1880.120.12----------------------------------------------------------------------0.12---

Antisense strand
CAGCAGCCTGGGCAGCACAACATTCTGGGAGGGCTTCTCCTGGCCTGAGCGTAAGTGTCCCCAACACAGGGGAGAGGGAGCTGGGAGCCCAAGCCCTAGGGATCGGGTGGCAGAGGAGTCCCAGGGTGACCCCGAGGGGCTGGAAGCAGGTGTTGCTGCCGCCGGGGCAGGGGCTTCAGGGCTGAGGAGGCCAATGGCCGTTCTGTCTCCTCCTGTAGTTCGCCCAAAGTCAGACGAGGGCTCTGTCCTCCTGCTGCACCGAGCTTTG
..........................................................................................(((((((.....((.((((((((...((((((.(((....)))..))))))...(((....))).)))))))).))...)))))))(((((..((((.((((...))))......)))).))))).....................................................
..........................................................................................91.............................................................................................................................218................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR189784SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR343334SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR040042(GSM532927)
G428N. (cervix)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR040036(GSM532921)
G243N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR040027(GSM532912)
G220T. (cervix)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
........................................................................................................................................................................................................................................................TCCTGCTGCACCGAGCATA. 191.000.00------------------------------------------1.00-------------------------------
....................................................................................................................................................GGTGTTGCTGCCGCCACC...................................................................................................... 181.000.00-----------------------------------------1.00--------------------------------
...............................................................................................................................................................CGCCGGGGCAGGGGCTCCA.......................................................................................... 191.000.00-----------------------------------------------------------1.00--------------
...............................................................................................................................................................CGCCGGGGCAGGGGCACGG.......................................................................................... 190.330.00---------------------------------------------------------------------0.22-0.11--
...............................................................................................................................................................CGCCGGGGCAGGGGCCCA........................................................................................... 180.110.00-------------------------------------------------------------------------0.11
...............................................................................................................................................................GCCCCTGCCCCGGCG.............................................................................................. 1590.110.11----------------------------0.11---------------------------------------------
...............................................................................................................................................................CGCCGGGGCAGGGGCACG........................................................................................... 180.110.00------------------------------------------------------------------------0.11-