ID: uc003xas.2_intron_15_0_chr8_21983246_r.3p
GENE: (3)
chr8:21983196-21983445-


(1)
B-CELL 		(2)
BREAST 		(6)
CELL-LINE 		(1)
FIBROBLAST 		(10)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
CCTCAGACTCCCTGCTCAGCCTGGCGTGCGAGCCTTCCAGCTGCCTGGTCCACTCTTGCTGGTTCTGAATTAGGCTTCAGAGACCTGGGGCGAGGAACTGGGCTGGCTCTGAGTGTGGATGGGGTGGGCGCTAAGGTGAGGAATGGGGTTCTCAGCAGCCCAAGAAACCCAGATTCCTGACCTCTGCATTGTCCCCTCAGGACCCCAAGATGGCCAGGCCAGTCTCCAGGACCCGGGACTTCAGGACATA
..................................................................................((..(((((.((........)).)))))..)).....(((((.((((((..((((.((((((.(((((.((..........)))))))..)))))).))))..))...)))))))))...................................................
................................................................................81.....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR343337SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................................CTGACCTCTGCATTGTCAGCC.....................................................2143.000.0016.0013.005.001.004.001.002.001.00-----------------------
................................................................................................................................................................................CTGACCTCTGCATTGACAG.......................................................1935.000.002.009.0010.0014.00---------------------------
................................................................................................................................................................................CTGACCTCTGCATTGCCAG.......................................................1920.000.003.0011.006.00----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCGCC.....................................................2115.000.009.002.004.00----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCAGC......................................................207.000.003.001.001.00--2.00-------------------------
................................................................................................................................................................................CTGACCTCTGCATTGACA........................................................187.000.003.001.002.001.00---------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCTGCC.....................................................217.000.003.004.00-----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCGCCA....................................................226.000.001.002.002.001.00---------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCATCC.....................................................215.000.001.001.001.00-1.00----------------------1.00---
................................................................................................................................................................................CTGACCTCTGCATTGACCG.......................................................195.000.003.00--2.00---------------------------
................................................................................................................................................................................CTGACCTCTGCATTGCCCG.......................................................194.000.00-2.001.001.00---------------------------
................................................................................................................................................................................CTGACCTCTGCATTGCCA........................................................182.000.00-1.001.00----------------------------
.....................................................................................TGGGGCGAGGAACTGCGCA..................................................................................................................................................192.000.00--------2.00----------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCGTCC....................................................222.000.001.00-1.00----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCACCC.....................................................212.000.00----2.00--------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCGCTA....................................................221.000.001.00------------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCATCT.....................................................211.000.00------------1.00------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCTGCC....................................................221.000.00-1.00-----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCAGAC.....................................................211.000.00-1.00-----------------------------
..TCAGACTCCCTGCTCAGCCTGG..................................................................................................................................................................................................................................2211.001.00----------------------------1.00--
................................................................................................................................................................................CTGACCTCTGCATTGTCAGTC.....................................................211.000.00-1.00-----------------------------
.................................................................................................................................................................................TGACCTCTGCATTGTCCGCCA....................................................211.000.00---1.00---------------------------
........TCCCTGCTCAGCCTGCTTT...............................................................................................................................................................................................................................191.000.00---------------1.00---------------
................................................................................................................................................................................CTGACCTCTGCATTGCCAT.......................................................191.000.00-------1.00-----------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCGCT.....................................................211.000.00--1.00----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCTGGT.....................................................211.000.001.00------------------------------
..............................................................................AGAGACCTGGGGCGAGGAGCAG......................................................................................................................................................221.000.00-------------------1.00-----------
................................................................................................................................................................................CTGACCTCTGCATTGTCGTCC.....................................................211.000.00-1.00-----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCGCCC....................................................221.000.001.00------------------------------
.................................................................................................................................................................................TGACCTCTGCATTGTCATC......................................................191.000.00--1.00----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCATC......................................................201.000.00----1.00--------------------------
.....................................................................................................................................................................................................................CCAGGCCAGTCTCCAGGACCCGGGACTTCAGG.....3211.001.00-----------1.00-------------------
......................................................................................................................................................................................................AGGACCCCAAGATGGAGAA.................................191.000.00--------------------1.00----------
................................................................................................................................................................................CTGACCTCTGCATTGTCGTCT.....................................................211.000.00-1.00-----------------------------
....................................................................................................................................................................................CCTCTGCATTGTCCCCTCA...................................................1911.001.00------------------------1.00------
........................................................................................GGCGAGGAACTGGGCGAC................................................................................................................................................181.000.00--------------1.00----------------
.................................................................................................................................................................................TGACCTCTGCATTGTCCGCC.....................................................201.000.00--1.00----------------------------
.....................................................................................................GCTGGCTCTGAGTGTGGATGGGGT.............................................................................................................................2411.001.00-----------------------1.00-------
.....................................................................................................................................................................................................................................GACCCGGGACTTCAGGAC...1811.001.00-------------------------1.00-----
........................CGTGCGAGCCTTCCAGCTG...............................................................................................................................................................................................................1911.001.00---------1.00---------------------
.................................................................................................................................................................................TGACCTCTGCATTGTCAGTC.....................................................201.000.001.00------------------------------
................................................................................................................................................................................CTGACCTCTGCATTGCCCC.......................................................191.000.00-1.00-----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCGC......................................................201.000.00---1.00---------------------------
............................................................................................AGGAACTGGGCTGGCGGGA...........................................................................................................................................191.000.00--1.00----------------------------
..........................................................................................................CTCTGAGTGTGGATGGGGTG............................................................................................................................2011.001.00-----------------1.00-------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCTCC.....................................................211.000.00-1.00-----------------------------
...............................................................................................................................................................................................................................CTCCAGGACCCGGGACTTCAGG.....2211.001.00-------------1.00-----------------
................................................................................................................................................................................CTGACCTCTGCATTGTCAG.......................................................191.000.001.00------------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCAGTT.....................................................211.000.00--1.00----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCGCAC....................................................221.000.001.00------------------------------
.................................................................................................................................................................................TGACCTCTGCATTGTCAGC......................................................191.000.001.00------------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCCGACA....................................................221.000.001.00------------------------------
........TCCCTGCTCAGCCTGGCGTGC.............................................................................................................................................................................................................................2111.001.00---------------------1.00---------
............................................................................................................CTGAGTGTGGATGGGGTGGGC.........................................................................................................................2111.001.00------------------1.00------------
................................................................................................................................................................................CTGACCTCTGCATTGTCAGCA.....................................................211.000.001.00------------------------------
.............................................................................................................................................................................................................CAAGATGGCCAGGCCTGCC..........................191.000.00----------------------1.00--------
................................................................................................................................................................................CTGACCTCTGCATTGTTAGC......................................................201.000.00--1.00----------------------------
................................................................................................................................................................................CTGACCTCTGCATTGTCGGCC.....................................................211.000.00--1.00----------------------------
.....................................................................................................................................................TCTCAGCAGCCCAAGGGTT..................................................................................191.000.00----------1.00--------------------
.......................................................................................................TGGCTCTGAGTGTGGA...................................................................................................................................1630.330.33------------------------------0.33

Antisense strand
CCTCAGACTCCCTGCTCAGCCTGGCGTGCGAGCCTTCCAGCTGCCTGGTCCACTCTTGCTGGTTCTGAATTAGGCTTCAGAGACCTGGGGCGAGGAACTGGGCTGGCTCTGAGTGTGGATGGGGTGGGCGCTAAGGTGAGGAATGGGGTTCTCAGCAGCCCAAGAAACCCAGATTCCTGACCTCTGCATTGTCCCCTCAGGACCCCAAGATGGCCAGGCCAGTCTCCAGGACCCGGGACTTCAGGACATA
..................................................................................((..(((((.((........)).)))))..)).....(((((.((((((..((((.((((((.(((((.((..........)))))))..)))))).))))..))...)))))))))...................................................
................................................................................81.....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR343337SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................................CTGACCTCTGCATTGCGGT....................................................... 191.000.00--------------------------1.00----
........................................................................................................................................................................................................................GGCCAGTCTCCAGGACATT............... 191.000.00----------------1.00--------------
..............GCTCGCACGCCAGGCTGAG......................................................................................................................................................................................................................... 1920.500.50-----------------------------0.50-