ID: uc003xas.2_intron_10_0_chr8_21979208_r.3p
GENE: (8)
chr8:21979158-21979407-


(1)
BRAIN
(6)
BREAST
(6)
CELL-LINE
(1)
HELA
(1)
OTHER
(2)
RRP40.ip
(48)
SKIN
(1)
UTERUS

Sense strand
AGACTATAGACCCTATCATAGGTAGAAGTCCATGAGCAACTTTTTTCCACCTAATGTTATATCCTATGGCATTTTGCTCCTATAAACACGATTTTAGGACTGACAAGAGTCCATTGTTCATTCTTGTGGGTTCTGTTGAATTGTGTCTGCCATTTTAAAATCTCTGGTTGGATTGGGGGGGTGGTGGATGGGTTTAACAGAAGGAATCAACACAGAAAACGCCCCCAACTCCACAACCTTCCTGCAATGG
........................................................................................................................................((((((.((((..(((((((..(((((......)))))...)))))))..))))))))))......................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
...................................................................................................................................................................CTGGTTGGATTGGGGGGGTGGTGGATGGG..........................................................29136.0036.008.002.002.00--1.00--2.002.003.00-1.00---1.001.00-1.001.00-1.001.00---1.001.00--1.00-----1.001.00--1.00--------1.00---1.00-1.00----------
...................................................................................................................................................................CTGGTTGGATTGGGGGGGTGGTGGATGGGTTT.......................................................32114.0014.001.001.00--3.002.002.00-1.00---2.001.00-------------1.00---------------------------------------
...................................................................................................................................................................CTGGTTGGATTGGGGGGGTGGTGGATGGGTT........................................................3117.007.00---1.00---1.00-1.00-----1.00-1.00----------1.00----------------1.00---------------------
............................................................................................................................................................................TTGGGGGGGTGGTGGATGGGTA........................................................225.000.00----------1.00--1.001.00------1.00------------------------1.00--------------------
...................................................................................................................................................................CTGGTTGGATTGGGGGGGTGGTGGATGGGT.........................................................3015.005.00--1.00---1.001.00-1.00---1.00-----------------------------------------------------
..............................................................................................................................................................................GGGGGGGTGGTGGATGGGTTT.......................................................2114.004.00-2.00------------------------1.00--------1.00-------------------------------
............................................................................................................................................................................TTGGGGGGGTGGTGGATGGGTTT.......................................................2314.004.00------1.00-------1.00------1.00--------------1.00------------------------------
.............................................................................................................................................................................TGGGGGGGTGGTGGATGGGTA........................................................213.000.00--1.00-------------------1.00-------------------------1.00------------------
.............................................................................................................................................................................TGGGGGGGTGGTGGATGGGTT........................................................2113.003.00----------------1.00--------2.00-----------------------------------------
..............................................................................................................................................................................GGGGGGGTGGTGGATGGG..........................................................1813.003.00-----------------1.002.00------------------------------------------------
............................................................................................................................................................................TTGGGGGGGTGGTGGATGGG..........................................................2013.003.00--1.001.001.00--------------------------------------------------------------
...................................................................................................................................................................CTGGTTGGATTGGGGGGGTGGTGGATGGGTTA.......................................................3213.007.00-----1.00---------1.00-------1.00-------------------------------------------
............................................................................................................................................................................TTGGGGGGGTGGTGGATGGGTT........................................................2213.003.00---1.00-------2.00-------------------------------------------------------
...................................................................................................................................................................CTGGTTGGATTGGGGGGGTGGTGGATGGGTTTT......................................................3312.0014.00------------------------1.00----------------------1.00-------------------
.............................................................................................................................................................................TGGGGGGGTGGTGGATGGGTTT.......................................................2212.002.00----------------------------------------1.00----------------1.00---------
.............................................................................................................................................................................TGGGGGGGTGGTGGATGGG..........................................................1912.002.00---------------------------------1.00-----1.00---------------------------
.............................................................................................................................................................................TGGGGGGGTGGTGGATGGGTTA.......................................................2212.003.001.00-------------1.00----------------------------------------------------
.......................................................................................................................................................................TTGGATTGGGGGGGTGGTGGATG............................................................2312.002.00--------1.00-------------------------------------------1.00--------------
.......................................................................................................................................................................................................GAAGGAATCAACACAGAAAACGCCCCCA.......................2812.002.00---2.00---------------------------------------------------------------
...............................................................................................................................................................................GGGGGGTGGTGGATGGGTAGTT.....................................................221.000.00-----------------------------1.00-------------------------------------
............................................................................................................................................................................................................AATCAACACAGAAAATATG...........................191.000.00-------------------------------------------------------1.00-----------
..............................................................................................................................................................................GGGGGGGTGGTGGATGGGTTTAACAG..................................................2611.001.00-----------1.00-------------------------------------------------------
.............................................................................................................................................................................TGGGGGGGTGGTGGATGGGTTTA......................................................2311.001.00-------1.00-----------------------------------------------------------
...................................................................................................................................................................CTGGTTGGATTGGGGGGGTGGTGGATGGGTTAA......................................................3311.007.00----------------------------------------------------------1.00--------
.....................................AACTTTTTTCCACCTATCTT.................................................................................................................................................................................................201.000.00------------------------------1.00------------------------------------
............................................................................................................................................................................TTGGGGGGGTGGTGGATCGCA.........................................................211.000.00------------------------------1.00------------------------------------
..............................................................................................................................................................................GGGGGGGTGGTGGATGGGTT........................................................2011.001.00------------------------------------------------------------1.00------
............................................................................................................................................................................TTGGGGGGGTGGTGGATGGGTTA.......................................................2311.003.00----1.00--------------------------------------------------------------
...............................................................................................................................................................................GGGGGGTGGTGGATGGGTGG.......................................................201.000.00-----------------------------------------------------1.00-------------
.............................................................................................................................................TGTGTCTGCCATTTTAAATC.........................................................................................201.000.00--------------------------1.00----------------------------------------
.............................................................................................................................................................................TGGGGGGGTGGTGGATGGGTG........................................................211.000.00-------1.00-----------------------------------------------------------
.............................................................................................................................................................................TGGGGGGGTGGTGGATGGGTTG.......................................................2211.003.00-------------------------------------------1.00-----------------------
.......................................................................................................................................................................................................GAAGGAATCAACACAGAAAACGCC...........................2411.001.00-----------------------------------------------------------1.00-------
....................................................................................................................................................................TGGTTGGATTGGGGGGGTGGTGGATGGG..........................................................2811.001.00----------------1.00--------------------------------------------------
.......................................................................................................................................................................TTGGATTGGGGGGGTGGTGGCTG............................................................231.000.00-------------------1.00-----------------------------------------------
...................................................................................................................................................................CTGGTTGGATTGGGGGGGTGGTGGATGGGTTTAA.....................................................3411.001.00---------------1.00---------------------------------------------------
...................................................................................................................................................................CTGGTTGGATTGGGGGGGTGGTGGA..............................................................2511.001.00--------------------1.00----------------------------------------------
...................................................................................................................................................................CTGGTTGGATTGGGGGGGTGGTGGATGGGTTTCA.....................................................3411.0014.00------------------------1.00------------------------------------------
....................................CAACTTTTTTCCACCTCACG..................................................................................................................................................................................................201.000.00--------------------------------1.00----------------------------------
.................................................................................................................................................................................................................ACACAGAAAACGCCCCCG.......................181.000.00-----------------------------1.00-------------------------------------
..............................................................................................................................................................................GGGGGGGTGGTGGATGGGTTA.......................................................2111.001.00----------------------------------1.00--------------------------------
....................................................................................................................................................................................................................CAGAAAACGCCCCCAACTCCGC................221.000.00---------------------------------------------------1.00---------------
.....................................................................................................................................................................................TGGTGGATGGGTTTAATG...................................................181.000.00--------------------------------------------1.00----------------------
..............................................................................................................................................................................................................................CCCCAACTCCACAACC............1620.500.50--------------------------------------------------------------0.50----
.......................................................................................................................................................................TTGGATTGGGGGGGTG...................................................................1630.330.33-------------------------------0.33-----------------------------------
...................................................................................................................................................................................................................................ACTCCACAACCTTCCT.......1630.330.33-----------0.33-------------------------------------------------------
...............................................................................................................................................................................GGGGGGTGGTGGATGGG..........................................................1750.200.20------------------0.20------------------------------------------------
...............................................................................................AGGACTGACAAGAGT............................................................................................................................................1570.140.14-----------0.14-------------------------------------------------------
......................................................................................................................................................................................................AGAAGGAATCAACACA....................................1690.110.11-------------------0.11-----------------------------------------------

Antisense strand
AGACTATAGACCCTATCATAGGTAGAAGTCCATGAGCAACTTTTTTCCACCTAATGTTATATCCTATGGCATTTTGCTCCTATAAACACGATTTTAGGACTGACAAGAGTCCATTGTTCATTCTTGTGGGTTCTGTTGAATTGTGTCTGCCATTTTAAAATCTCTGGTTGGATTGGGGGGGTGGTGGATGGGTTTAACAGAAGGAATCAACACAGAAAACGCCCCCAACTCCACAACCTTCCTGCAATGG
........................................................................................................................................((((((.((((..(((((((..(((((......)))))...)))))))..))))))))))......................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
...................................................................................................................................................................................................................................CCATTGCAGGAAGGTTGTGGAGT 2311.001.00------------------------------------------1.00------------------------
............................................................................................................................................TTGTGTCTGCCATTTGAGA........................................................................................... 191.000.00-------------------------------------------------1.00-----------------
.........................................................................................................................................................TTTAAAATCTCTGGTCGAA.............................................................................. 191.000.00-------------------------------------------------------------1.00-----
....................................................................ATAGGAGCAAAATGC....................................................................................................................................................................... 1570.430.43----------------------------------------------------------------0.290.14-
..............................................................................................................................................................................CATCCACCACCCCCCC............................................................ 1630.330.33---------------------------------------------------------------0.33---
....................................................................................................................................................................................................GTTGATTCCTTCTGT....................................... 1590.110.11------------------------------------------------------------------0.11