ID: uc003wzp.2_intron_12_0_chr8_20075794_f.3p
GENE: (13)
chr8:20077574-20077823+


(1)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(5)
BRAIN 		(1)
BREAST 		(20)
CELL-LINE 		(2)
CERVIX 		(6)
HEART 		(3)
HELA 		(2)
LIVER 		(2)
OTHER 		(11)
SKIN 		(1)
XRN.ip

Sense strand
CTTCCCTCTTCTCTGGTTCCTTATGATACTCACTGTCTGTGCCTTCTTTTCCTCAGTCCTTCTCATTTAGTCTTGGGAGTCCCAACTTTTTTTTTTCAATATCTATTTAATACACTGCTAGTCATATAACAATACATACTGGATAACACTGCTAAGTTGGAAGTCATTTGCATTTATTAATTCAATCTCAATTTTTTAAGGTCCTTACGAAAATCGCACTGTCTTTGAGACTTTGGACATTGGCTGGCAG
...................................................(((((..((........))..))))).............................................................................................................................................................................
..................................................51.........................................................110..........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.....................................................................................CTTTTTTTTTTCAATATAAAG................................................................................................................................................2194.000.0045.0024.0014.00-11.00----------------------------------------------------
.....................................................................................CTTTTTTTTTTCAATACCAG.................................................................................................................................................205.000.004.001.00-------------------------------------------------------
.....................................................................................CTTTTTTTTTTCAATATAAAT................................................................................................................................................214.000.003.00---1.00----------------------------------------------------
..............................................................................................................................................................................................................................CTTTGAGACTTTGGACATTGGCTGGCAG2813.003.00---3.00-----------------------------------------------------
...............................................................................................................................................................................................................................TTTGAGACTTTGGACATTGGCTGGC..2513.003.00--------1.00-2.00----------------------------------------------
............................................................................................TTTTCAATATCTATTTATT...........................................................................................................................................193.000.00------3.00--------------------------------------------------
....................................................................................ACTTTTTTTTTTCAATCAAG..................................................................................................................................................202.000.00---------1.00----------1.00------------------------------------
........................................................................................................................................................................................................................CACTGTCTTTGAGACTTTGGACATTGGCTGGC..3212.002.00---2.00-----------------------------------------------------
.........................................................................................................................................................................GCATTTATTAATTCAATCTCAATTTTTTAAG..................................................3112.002.00-----2.00---------------------------------------------------
.........................................................................................................................................................................GCATTTATTAATTCAATCTCAATTTTTTAAT..................................................312.000.00-----2.00---------------------------------------------------
...........................................................................................................................................................................................................................TGTCTTTGAGACTTTGGACATTGGCTGGCAG3112.002.00---2.00-----------------------------------------------------
.....................................................................................................................................................................................................................................ACTTTGGACATTGGCTGGCATA222.000.00---------------2.00-----------------------------------------
.....................................................................................................................................................................................................................................ACTTTGGACATTGGCTGGC..1912.002.00-----------2.00---------------------------------------------
.......................................................................................................................................................................................................................GCACTGTCTTTGAGACTTTGGAC............2311.001.00----------------------------------------------------1.00----
...................................................................................................................................................................................................................AATCGCACTGTCTTTGAGACTTTGGA.............2611.001.00--------------------------------------------------1.00------
......................................................................................................................................................................................................................CGCACTGTCTTTGAGACTTTGGACATTGGCTGGC..3411.001.00--------------------------------1.00------------------------
...................................................................................AACTTTTTTTTTTCAATCTAA..................................................................................................................................................211.000.00--1.00------------------------------------------------------
.....................................................................................................................................................................................................................TCGCACTGTCTTTGAGACTTTGGACATTGGC......3111.001.00-------------1.00-------------------------------------------
...................................................................................................................................................................................................................................AGACTTTGGACATTGGCTGGCAG2311.001.00----------------------------------------------1.00----------
.................................................................................................................................................................................................................................TGAGACTTTGGACATTGGC......1911.001.00--------------------------------------1.00------------------
.....................................................................................CTTTTTTTTTTCAATAAATG.................................................................................................................................................201.000.00----1.00----------------------------------------------------
...................................................................................AACTTTTTTTTTTCAAGGGG...................................................................................................................................................201.000.00-------------------------------------1.00-------------------
...............................................................................................................................................................................................................CGAAAATCGCACTGTCTTTGAGAC...................2411.001.00---1.00-----------------------------------------------------
.....................................................................................CTTTTTTTTTTCAATATAA..................................................................................................................................................191.000.001.00--------------------------------------------------------
...............................................................................................................................................................................................................................TTTGAGACTTTGGACACGAC.......201.000.00---------------------------------1.00-----------------------
...............................................................................................................................................................................................................CGAAAATCGCACTGTCT..........................1711.001.00-------1.00-------------------------------------------------
............................................................................................................................................................................................................................GTCTTTGAGACTTTGGACATTGGC......2411.001.00---------------------------1.00-----------------------------
........................................................................................................................................................................................................................................TTGGACATTGGCTGGCAG1811.001.00------------------------------------1.00--------------------
........................................................................................................ATTTAATACACTGCTAGTCATATAAC........................................................................................................................2611.001.00-----------------------------------------------1.00---------
.....................................................................................CTTTTTTTTTTCAATATATAG................................................................................................................................................211.000.001.00--------------------------------------------------------
..................................................................................................................................................................................................................................GAGACTTTGGACATTGGCTGGC..2211.001.00--------------------------1.00------------------------------
.......................................................................................................................................................................................................GGTCCTTACGAAAATCGCACTGTCTTTGAGA....................3111.001.00---1.00-----------------------------------------------------
............................................................................................................................................................................................................................GTCTTTGAGACTTTGGACATTGGCTGGCAG3011.001.00---1.00-----------------------------------------------------
......................................................................................................................................................................................................................CGCACTGTCTTTGAGACTTTGGA.............2311.001.00-------------1.00-------------------------------------------
.............................................................................................................................................................................................................................TCTTTGAGACTTTGGACATTGGCTGG...2611.001.00------------------------1.00--------------------------------
.....................................................................................................................................................................................................................................ACTTTGGACATTGGCTGGCCGCT2311.002.00---------------------------------------1.00-----------------
........................................................................................................................................................................................................................CACTGTCTTTGAGACTTTGGACATTGGCTGGG..321.000.00---1.00-----------------------------------------------------
.......................................................................................................................................................................................................................................TTTGGACATTGGCTGG...1611.001.00----------------------------------------1.00----------------
...................................................................................................................................................................................................................AATCGCACTGTCTTTGAGACTTTGG..............2511.001.00-------------------1.00-------------------------------------
........................................................TCCTTCTCATTTAGTCTATAG.............................................................................................................................................................................211.000.00---------1.00-----------------------------------------------
..........................................................................................................................................................................................................CCTTACGAAAATCGCACTGTCTTTGAGTT...................291.000.00---------------------------------------------------1.00-----
...........................................................................................TTTTTCAATATCTATTTAATACACTG.....................................................................................................................................2611.001.00----1.00----------------------------------------------------
................................................................................................................................................................................................................................TTGAGACTTTGGACATTGGC......2011.001.00-------------------------------------------1.00-------------
.....................................................................................................................................................................................................................TCGCACTGTCTTTGAG.....................1611.001.00--------------1.00------------------------------------------
.....................................................................................CTTTTTTTTTTCAATACATG.................................................................................................................................................201.000.00--1.00------------------------------------------------------
.......................................................................................................................................................................................................................GCACTGTCTTTGAGACTTTGGACATTGGCTGGC..3311.001.00---1.00-----------------------------------------------------
...........................................................................................................................................................................................................................TGTCTTTGAGACTTTGGACATTGGC......2511.001.00------------------1.00--------------------------------------
............................................................................................................................................................................................................................GTCTTTGAGACTTTGGACATTGGCTGGG..281.000.00-----------------------1.00---------------------------------
...............................................................................................................................................................................................................CGAAAATCGCACTGTCTTTGAGACTTTGGA.............3011.001.00----------------1.00----------------------------------------
.........................................................................................................................................................................................................TCCTTACGAAAATCGCACTGTCTTTGAGAC...................3011.001.00---1.00-----------------------------------------------------
.......................................................................................................................................................................................................................................TTTGGACATTGGCTGGCAGCC211.000.00---------------------------------------------1.00-----------
................................................................................................................................................................................................................................TTGAGACTTTGGACATTGGCTGGCAG2611.001.00--------1.00------------------------------------------------
...............................ACTGTCTGTGCCTTCG...........................................................................................................................................................................................................161.000.00----------------------1.00----------------------------------
.......................................................................................................................................................................................................GGTCCTTACGAAAATCGCACTGTCTTTTAGA....................311.000.00---1.00-----------------------------------------------------
..........................................................................................................................................................................................................CCTTACGAAAATCGCACTGTCTTTGAGATT..................301.000.00----------------1.00----------------------------------------
.................................................................................................................................................................................................................AAAATCGCACTGTCTTTGAGTT...................2211.001.00------------------------------------------------1.00--------
..................................................................................................................................................................................................................AAATCGCACTGTCTTTGAGACTTTGGACATTGG.......3311.001.00----------------------------1.00----------------------------
.........................................................................................................................................................................................................TCCTTACGAAAATCGCACTGTCTTT........................2511.001.00---------------------1.00-----------------------------------
........................................................................................................................................................................................................GTCCTTACGAAAATCGCACTGTCTTTGAGAC...................3111.001.00---1.00-----------------------------------------------------
..............................................................................................................................................................................................................................CTTTGAGACTTTGGACATTGGCTGA...251.000.00--------------------------------------------1.00------------
.....................................................................................................................................................................................................................................ACTTTGGACATTGGCTGGCAG2111.001.00-------------------------------1.00-------------------------
...................................................................................................................................................................................................................AATCGCACTGTCTTTGAGACTTTG...............2411.001.00--------------1.00------------------------------------------
......................................................................................................................................................................................................................CGCACTGTCTTTGAGACTTTG...............2111.001.00-----------------------------------------1.00---------------
...................................................................................................................................................................................................................................AGACTTTGGACATTGGCTGGCA.2211.001.00-----------------------------1.00---------------------------
.........................................................................................................................................................................................................TCCTTACGAAAATCGCACTGTCTTTGAG.....................2811.001.00-------1.00-------------------------------------------------
.....................................................................................................................................................................................................................................ACTTTGGACATTGGCTGGCAGCA2311.001.00------------------------------------------1.00--------------
.....................................................................................CTTTTTTTTTTCAATATCAAG................................................................................................................................................211.000.00----1.00----------------------------------------------------
...........................................................................................................................................................................................................CTTACGAAAATCGCACTGT............................1911.001.00------------1.00--------------------------------------------
.....................................................................................CTTTTTTTTTTCAATACTAT.................................................................................................................................................201.000.00-1.00-------------------------------------------------------
.................................................................................................................................................................................................................AAAATCGCACTGTCTTTGAGACTTTGGACAT..........3111.001.00-------------------------------------------------1.00-------
.................................................................................................................................................................................................................AAAATCGCACTGTCTTTGAG.....................2011.001.00------------1.00--------------------------------------------
.................................................................................................................................................................................................................AAAATCGCACTGTCTTTGAGACT..................2311.001.00-------------------------1.00-------------------------------
.......................................................................................................................................................................................................................GCACTGTCTTTGAGACTTTGGACATTGGCTGGG..331.000.00---1.00-----------------------------------------------------
...................................................................................................................................................................................................................................AGACTTTGGACATTGGCTGGTG.221.000.00----------------------------------1.00----------------------
....................................................................................................................................................................................................................ATCGCACTGTCTTTGAGACTCTGG..............241.000.00-----------------------------------1.00---------------------
.....................................................................................CTTTTTTTTTTCAATATCACG................................................................................................................................................211.000.00--1.00------------------------------------------------------
......................................................................................TTTTTTTTTTCAATATCCCAG...............................................................................................................................................211.000.00-1.00-------------------------------------------------------
....................................................................................ACTTTTTTTTTTCAATAACC..................................................................................................................................................201.000.00------1.00--------------------------------------------------
....................................................................................ACTTTTTTTTTTCAATCAG...................................................................................................................................................191.000.001.00--------------------------------------------------------
..................................................................................................................................................................................................................................GAGACTTTGGACATTGGC......1820.500.50-----------------------------------------------------0.50---
................TTCCTTATGATACTCA..........................................................................................................................................................................................................................1640.250.25-------------------------------------------------------0.25-
............................................................TCTCATTTAGTCTTGG..............................................................................................................................................................................1640.250.25------------------------------------------------------0.25--
............................................................................................................................................................................................................................GTCTTTGAGACTTTGG..............1670.140.14--------------------------------------------------------0.14

Antisense strand
CTTCCCTCTTCTCTGGTTCCTTATGATACTCACTGTCTGTGCCTTCTTTTCCTCAGTCCTTCTCATTTAGTCTTGGGAGTCCCAACTTTTTTTTTTCAATATCTATTTAATACACTGCTAGTCATATAACAATACATACTGGATAACACTGCTAAGTTGGAAGTCATTTGCATTTATTAATTCAATCTCAATTTTTTAAGGTCCTTACGAAAATCGCACTGTCTTTGAGACTTTGGACATTGGCTGGCAG
...................................................(((((..((........))..))))).............................................................................................................................................................................
..................................................51.........................................................110..........................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
................................CTGTCTGTGCCTTCTTTGCAA..................................................................................................................................................................................................... 211.000.00-----------------1.00---------------------------------------
......................................................................................ATAGATATTGAAAAAAAAAA................................................................................................................................................ 2011.001.00-------1.00-------------------------------------------------
................................CTGTCTGTGCCTTCTTGCA....................................................................................................................................................................................................... 191.000.00------------------------------1.00--------------------------
................................CTGTCTGTGCCTTCTTTCCAT..................................................................................................................................................................................................... 211.000.00-----------------1.00---------------------------------------