ID: uc003wnw.1_intron_29_0_chr7_158496394_r.3p
GENE: NCAPG2(1)
chr7:158496344-158496593-


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(2)
B-CELL 		(12)
BRAIN 		(13)
BREAST 		(16)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(6)
SKIN 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
GTAGGCACTGCCCTCAGAGAGTATCTCCCCAGCTGTGGACGTGGGCATTGTCCTCAGAGACATCAGTCTCCTGAACTCTTGTTGCTGGTTTGGTGCCTCTTGTTGTGTCCATGAGGAAGGAGTTTGGGGACGGAGTGGGAAGTCACAGGTGGTGAGAAGGTAACAGGGATTTCTTCTTTTTAATGCTCATCTTGATTTAGTACCAGACCTCCTGTGCGAAGAGTAACCTGCTCTTCGGACTGATAACTGG
.................................................................(((.((..(((((((...(((.....))).((((.((.......)).)))).)))))))..))))).......................................................................................................................
..........................................................59........................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
...............................................................................................................TGAGGAAGGAGTTTGTAT.........................................................................................................................1823.000.00--3.003.001.00-3.00---1.00-----1.001.001.00--1.001.002.00--2.001.00---------------1.00----1.00---------------
...............................................................................................................TGAGGAAGGAGTTTGTGCT........................................................................................................................1914.000.003.00---2.002.00--1.00--1.00---1.00-----------1.00-----------1.001.00-------------------1.00---
...............................................................................................................TGAGGAAGGAGTTTGTATA........................................................................................................................1912.000.00-2.001.00---1.00--------2.001.00-1.00---1.00------------1.00---------------1.00-1.00----------
...............................................................CAGTCTCCTGAACTCTG..........................................................................................................................................................................1710.000.00-------3.00-----------------2.00----1.00------1.00------1.001.00----------1.00-------
...............................................................................................................TGAGGAAGGAGTTTGTGC.........................................................................................................................184.000.00-----1.00------1.00------------------1.00-----------------------1.00--------
...............................................................................................................TGAGGAAGGAGTTTGTAAA........................................................................................................................194.000.00--2.00---------------------1.00------------------------1.00--------------
...............................................................................................................TGAGGAAGGAGTTTGGGGTGTT.....................................................................................................................224.000.00---------2.00--------------------------------------------1.00--1.00------
...............................................................................................................TGAGGAAGGAGTTTGTTTA........................................................................................................................193.000.00----------1.00-----1.00---1.00-------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGTGCG........................................................................................................................193.000.001.00----1.00--------------------------------------------1.00-------------
...............................................................................................................TGAGGAAGGAGTTTGTATG........................................................................................................................193.000.00---1.001.00-------------------1.00---------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGAGAT........................................................................................................................192.000.001.00----------1.00----------------------------------------------------
.........................TCCCCAGCTGTGGACGTGGGCATT.........................................................................................................................................................................................................2412.002.00-------------------2.00--------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGTGT.........................................................................................................................182.000.00------------2.00---------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGAGAG........................................................................................................................191.000.00-1.00--------------------------------------------------------------
.....................TATCTCCCCAGCTGTGGACGTGGGCAC..........................................................................................................................................................................................................271.000.00--------------1.00-------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGTTTT........................................................................................................................191.000.001.00---------------------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGCGTT........................................................................................................................191.000.00-----------------1.00----------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGGGCTGT......................................................................................................................2121.000.50--------1.00-------------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGTGTT........................................................................................................................191.000.001.00---------------------------------------------------------------
.............................................................................................................................................GTCACAGGTGGTGAGTGT...........................................................................................181.000.00----------------------------1.00-----------------------------------
......................ATCTCCCCAGCTGTGGACGTGGGC............................................................................................................................................................................................................2411.001.00-------------1.00--------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGTTG.........................................................................................................................181.000.00-1.00--------------------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGAGGT........................................................................................................................191.000.00------------------------------------1.00---------------------------
...............................................................................................................TGAGGAAGGAGTTTGCAG.........................................................................................................................181.000.00--------1.00-------------------------------------------------------
.................................................................................................................AGGAAGGAGTTTGGGGACGGAGCGGG...............................................................................................................261.000.00-------------1.00--------------------------------------------------
......................ATCTCCCCAGCTGTGGACGGGGC.............................................................................................................................................................................................................231.000.00--------------1.00-------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGGGGGGT......................................................................................................................211.000.00---------1.00------------------------------------------------------
.............................................................ATCAGTCTCCTGAACTCTG..........................................................................................................................................................................191.000.00-------1.00--------------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGGCCAT.......................................................................................................................201.000.00---------------------------------1.00------------------------------
......................ATCTCCCCAGCTGTGGACGTGGGCATTGTCCCC...................................................................................................................................................................................................331.000.00-------------1.00--------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGTGTG........................................................................................................................191.000.00-1.00--------------------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGACC.........................................................................................................................181.000.00----1.00-----------------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGTTA.........................................................................................................................181.000.00-1.00--------------------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGTCTG........................................................................................................................191.000.00----------1.00-----------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGTACC........................................................................................................................191.000.00-----------------------------1.00----------------------------------
................................................................................................................GAGGAAGGAGTTTGGCAA........................................................................................................................181.000.00-----------1.00----------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGAAAA........................................................................................................................191.000.00----------------------------------------------------------1.00-----
...............................................................................................................TGAGGAAGGAGTTTGTAGA........................................................................................................................191.000.00--------------------1.00-------------------------------------------
................................................................................................................................................ACAGGTGGTGAGAAGGTAACAGGAG.................................................................................251.000.00-----------------------------------------------1.00----------------
..................................GTGGACGTGGGCATTGTCCTCAGAGACA............................................................................................................................................................................................2811.001.00-----------------------------------------------------------1.00----
............................................................................................................................................................................................................AGACCTCCTGTGCGAAGAG...........................1911.001.00--------------------------------1.00-------------------------------
.............................................................ATCAGTCTCCTGAACTCTTGTTGCTGGTT................................................................................................................................................................2911.001.00--------------------------------------1.00-------------------------
...............................................................................................................TGAGGAAGGAGTTTGCG..........................................................................................................................171.000.00------------------------------------------1.00---------------------
...............................................................................................................TGAGGAAGGAGTTTGATAG........................................................................................................................191.000.001.00---------------------------------------------------------------
.....................................................................................................................AGGAGTTTGGGGACGGAG...................................................................................................................1811.001.00----------------------------------------------1.00-----------------
...............................................................................................................TGAGGAAGGAGTTTGTATC........................................................................................................................191.000.00----------------------------------1.00-----------------------------
...............................................................................................................TGAGGAAGGAGTTTGGGCTG.......................................................................................................................2021.000.50--------0.50------------------------------------------------------0.50
..............................................................................................................ATGAGGAAGGAGTTTGGGGACGG.....................................................................................................................2311.001.00--------------1.00-------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGTGG.........................................................................................................................181.000.00---1.00------------------------------------------------------------
................................................................................................................GAGGAAGGAGTTTGGGGAC.......................................................................................................................1920.500.50-------------------------------------------------------------0.50--
...............................................................................................................TGAGGAAGGAGTTTGGGTTGT......................................................................................................................2120.500.50---------0.50------------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGGG..........................................................................................................................1720.500.50----------0.50-----------------------------------------------------
...............................................................................................................TGAGGAAGGAGTTTGGGATG.......................................................................................................................2020.500.50--------------------------------------------------------------0.50-

Antisense strand
GTAGGCACTGCCCTCAGAGAGTATCTCCCCAGCTGTGGACGTGGGCATTGTCCTCAGAGACATCAGTCTCCTGAACTCTTGTTGCTGGTTTGGTGCCTCTTGTTGTGTCCATGAGGAAGGAGTTTGGGGACGGAGTGGGAAGTCACAGGTGGTGAGAAGGTAACAGGGATTTCTTCTTTTTAATGCTCATCTTGATTTAGTACCAGACCTCCTGTGCGAAGAGTAACCTGCTCTTCGGACTGATAACTGG
.................................................................(((.((..(((((((...(((.....))).((((.((.......)).)))).)))))))..))))).......................................................................................................................
..........................................................59........................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
.................................................................................................TCTTGTTGTGTCCATGCATG..................................................................................................................................... 201.000.00-----------------------------------------1.00----------------------
..........................................................................................................................................................................TTCTTCTTTTTAATGCCAA............................................................. 191.000.00---------------------1.00------------------------------------------
.................................................................................................TCTTGTTGTGTCCATGCAGT..................................................................................................................................... 201.000.00----------------------------------------------------1.00-----------