ID: uc003wky.2_intron_18_0_chr7_151866335_r.3p
GENE: (3)
chr7:151866285-151866534-


(1)
AGO2.ip
(3)
B-CELL
(4)
BRAIN
(1)
BREAST
(10)
CELL-LINE
(1)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(1)
SKIN
(1)
XRN.ip

Sense strand
CAGAGATAGTAATAAGAATTCAGAATTAGGTTGCCACCACTAAATTCACTCTACTTTTTATAAAAAAACCTTTAAAAGATATCTTAGGAAATTAAAGGGTTTTTTCTTCCATTTCTTTTTTTCTTTCTTTCTTTTAAAGTTTTTTCCCCCCTTTAACTGAAATGTGGAATAAACATATTTGTAAATTTTACTTATTTTAGGATGGCAGTATAACACATCAGATTTCTAGGCCTAATCCTCCAAATTTTGG
......................................................................................................(((.((((((...............((((..((((((...........))))))..)))).)))))).))).............................................................................
....................................................................................................101............................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR189784SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM359173(GSM359173)
hela_10_1. (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
.........................................................................................................CTTCCATTTCTTTTTTTTTG.............................................................................................................................2031.000.0015.00-11.005.00------------------------
............................................................................................................................................................CTGAAATGTGGAATAAACAT..........................................................................2016.006.00-----6.00----------------------
..................................................................................................................CTTTTTTTCTTTCTTTCTTTTAAAG...............................................................................................................2515.005.004.00--1.00------------------------
..................................................................................................................CTTTTTTTCTTTCTTTCTTTTAACTTG.............................................................................................................274.000.00-3.00--1.00-----------------------
................................................................................................................TTCTTTTTTTCTTTCTTAAAG.....................................................................................................................214.000.001.003.00--------------------------
......................................................................................................................................................................................................AGGATGGCAGTATAACACA.................................1913.003.00--------3.00-------------------
...............................................................................................................TTTCTTTTTTTCTTTCTTTCTTTTCTAG...............................................................................................................283.000.00-1.001.001.00------------------------
......................................................................................................................................................................................................AGGATGGCAGTATAACACAT................................2012.002.00-------------------1.00-----1.00--
...................................................................................................................TTTTTTTCTTTCTTTCTTTGGGC................................................................................................................232.000.00-------2.00--------------------
..................................................................................................................................................................................................................TAACACATCAGATTTCTAGG....................2012.002.00-----------2.00----------------
...............................................................................................................TTTCTTTTTTTCTTTCTTTCTTAAG..................................................................................................................251.000.00-1.00--------------------------
..................................................................................................................CTTTTTTTCTTTCTTTCTTTTCTAG...............................................................................................................251.000.00---1.00------------------------
.......................................................................................................................................AAAGTTTTTTCCCCCCTTTAGTC............................................................................................231.000.00------1.00---------------------
............................................................................................................CCATTTCTTTTTTTCTTCACT.........................................................................................................................211.000.00----1.00-----------------------
.............................................................................................................CATTTCTTTTTTTCTTTCTTATTT.....................................................................................................................241.000.00-1.00--------------------------
............................................................................................................CCATTTCTTTTTTTCTTTTG..........................................................................................................................201.000.00-1.00--------------------------
............................................................................................................CCATTTCTTTTTTTCTTCAG..........................................................................................................................201.000.00------------------1.00---------
.......................................................................................................................TTTCTTTCTTTCTTTTAAAGTTTTTT.........................................................................................................2611.001.00--------------1.00-------------
.................................................................................................................TCTTTTTTTCTTTCTTTCTTTGAC.................................................................................................................241.000.00----1.00-----------------------
..............................................................................................................ATTTCTTTTTTTCTTTCTTTCGAG....................................................................................................................241.000.00----1.00-----------------------
......................................................................................................................................................................................................................ACATCAGATTTCTAGGCCTAA...............2111.001.00--------------------1.00-------
.........................................................................................................CTTCCATTTCTTTTTTTCTTTCG..........................................................................................................................231.000.00-1.00--------------------------
..............................................................................................................ATTTCTTTTTTTCTTTCTTTAAAG....................................................................................................................241.000.00---1.00------------------------
............................................................................................................CCATTTCTTTTTTTCTTTCTTTTTG.....................................................................................................................251.000.001.00---------------------------
.............................................................................................................CATTTCTTTTTTTCTTTCTTTCTTTTG..................................................................................................................271.000.001.00---------------------------
............................................................................................................CCATTTCTTTTTTTCTTTCATCG.......................................................................................................................231.000.00-1.00--------------------------
............................................................................................................CCATTTCTTTTTTTCTTTCTTATG......................................................................................................................241.000.00-1.00--------------------------
............................................................................................................CCATTTCTTTTTTTCAAG............................................................................................................................181.000.00-1.00--------------------------
...................................................................................................TTTTTTCTTCCATTTCTTTTTTTCTTTCCTTC.......................................................................................................................321.000.00-1.00--------------------------
............................................................................................................CCATTTCTTTTTTTCTAAG...........................................................................................................................191.000.00---1.00------------------------
.................................................................................................................TCTTTTTTTCTTTCTTTCAATT...................................................................................................................221.000.00---1.00------------------------
.............................................................................................................................................................................................ACTTATTTTAGGATGGCAGTATAA.....................................2411.001.00---------------------1.00------
.........................................................................................................CTTCCATTTCTTTTTCATG..............................................................................................................................191.000.00-1.00--------------------------
............................................................................................................CCATTTCTTTTTTTCTTTTAAG........................................................................................................................221.000.00---1.00------------------------
......................................................................................................................................................................................................AGGATGGCAGTATAACA...................................1711.001.00-----------------1.00----------
.......................................................................................................................................................................................................................CATCAGATTTCTAGGTAGA................191.000.00---------------1.00------------
.........................................................................................................CTTCCATTTCTTTTTTTCTTTTG..........................................................................................................................231.000.00------1.00---------------------
..................................................................................................................CTTTTTTTCTTTCTTTCTTTTAATCTG.............................................................................................................271.000.00-1.00--------------------------
...............................................................................................................TTTCTTTTTTTCTTTCTTTCTTTTCCAG...............................................................................................................281.000.00-1.00--------------------------
..............................................................................................................................................TTTCCCCCCTTTAACATT..........................................................................................181.000.00----------------1.00-----------
.........................................................................................................CTTCCATTTCTTTTTTTTTTA............................................................................................................................211.000.00--1.00-------------------------
.........................................................................................................CTTCCATTTCTTTTTTTCTTTCTTTTTG.....................................................................................................................281.000.00---1.00------------------------
..............................................................................................AAGGGTTTTTTCTTCTCGG.........................................................................................................................................191.000.00----1.00-----------------------
.................................................................................................................TCTTTTTTTCTTTCTTTCTTTTGGAG...............................................................................................................261.000.00----1.00-----------------------
.................................................................................................................TCTTTTTTTCTTTCTTAAAG.....................................................................................................................201.000.001.00---------------------------
....................................................................................................................TTTTTTCTTTCTTTCTTTGGGC................................................................................................................221.000.00-------1.00--------------------
.................................................................................................................TCTTTTTTTCTTTCTTTCAAAA...................................................................................................................221.000.00------1.00---------------------
...........................................................................................................................................................................................................................AGATTTCTAGGCCTAATCCTCCA........2311.001.00--------------------------1.00-
..............................................................................................................................................................................................................AGTATAACACATCAGATTTCTAGGCCT.................2711.001.00------------1.00---------------
..................................................................................................................................................................................................................TAACACATCAGATTTCTAGGCCT.................2311.001.00----------------------1.00-----
............................................................................................................CCATTTCTTTTTTTCTTTCTTTTTTG....................................................................................................................261.000.00-1.00--------------------------
..................................................................................................................CTTTTTTTCTTTCTTTCTTTTAACCTG.............................................................................................................271.000.00------1.00---------------------
.........................................................................................................CTTCCATTTCTTTTTTTCTTTTTTG........................................................................................................................251.000.001.00---------------------------
...............................................................................................................TTTCTTTTTTTCTTTCTTTCTTTTAATG...............................................................................................................281.000.00-1.00--------------------------
.........................................................................................................................................................................................................ATGGCAGTATAACACATC...............................1811.001.00---------------------------1.00
...................................................................................................................................................................................................................AACACATCAGATTTCTAGGCCTA................2311.001.00------------------------1.00---
..................................................................................................................CTTTTTTTCTTTCTTTCTTAA...................................................................................................................211.000.00----------1.00-----------------
.........................................................................................................CTTCCATTTCTTTTTTTCTTTTTG.........................................................................................................................241.000.00------1.00---------------------
............................................................................................................CCATTTCTTTTTTTCTTTAAG.........................................................................................................................211.000.00-1.00--------------------------
.......................................................................................................................................................................................AATTTTACTTATTTTCGGA................................................191.000.00----1.00-----------------------
...................................................................................................................TTTTTTTCTTTCTTTCTTTTAAAG...............................................................................................................2430.330.330.33---------------------------
.......................................................................................................................................................................................................................CATCAGATTTCTAGGC...................1640.250.25------------0.25---------------
..................................................................................................................CTTTTTTTCTTTCTTTCTTTTAAA................................................................................................................2440.250.250.25---------------------------

Antisense strand
CAGAGATAGTAATAAGAATTCAGAATTAGGTTGCCACCACTAAATTCACTCTACTTTTTATAAAAAAACCTTTAAAAGATATCTTAGGAAATTAAAGGGTTTTTTCTTCCATTTCTTTTTTTCTTTCTTTCTTTTAAAGTTTTTTCCCCCCTTTAACTGAAATGTGGAATAAACATATTTGTAAATTTTACTTATTTTAGGATGGCAGTATAACACATCAGATTTCTAGGCCTAATCCTCCAAATTTTGG
......................................................................................................(((.((((((...............((((..((((((...........))))))..)))).)))))).))).............................................................................
....................................................................................................101............................................................................180....................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR189784SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM359173(GSM359173)
hela_10_1. (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
.............AAGAATTCAGAATTAGGATG......................................................................................................................................................................................................................... 202.000.00---------2.00------------------
........................................................................................AAATTAAAGGGTTTTTTAAAT............................................................................................................................................. 211.000.00----------1.00-----------------
.....................................................................................AGGAAATTAAAGGGTTAA................................................................................................................................................... 181.000.00------1.00---------------------
............................................TTCACTCTACTTTTTAAGA........................................................................................................................................................................................... 191.000.00-----------------------1.00----
....................................................................................TAGGAAATTAAAGGGCTTT................................................................................................................................................... 191.000.00-1.00--------------------------
.........................................................................................................................................AGTTTTTTCCCCCCTTCTG.............................................................................................. 191.000.00-------------1.00--------------