ID: uc003wky.2_intron_16_0_chr7_151860912_r.5p
GENE: (5)
chr7:151864031-151864280-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(5)
B-CELL 		(3)
BRAIN 		(3)
BREAST 		(28)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(2)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(2)
OTHER 		(10)
SKIN

Sense strand
TCAAGCATGTTACTGAACAGCAAAGCATGGTTCAGAAACAGCTAGAACAGGTAATAAATAGGTTTGCAAAATAGAAACTACCAACAATTAATGAGTAGAATGTTTTGGTGTGTTGTTCATTAGTGACTTTGACTAGTGATTTTTTTTGACTAGTATTAAATGGCATTAAAAGTACATTGCCAAAAAGTGACAGCTCTGAGACCTCTTAGTAACTGCAGCCATAACAGCTCCAGTCTTTTACTTAAAGTGA
......................................................................................((((((((((((.((........)).))))))))))))........(((((((......)).))))).................................................................................................
.....................................................................................86.................................................................153...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577588(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR343334SRR343336SRR189785SRR038859(GSM458542)
MM386. (cell line)		SRR343337SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................................GACTAGTGATTTTTTTGTT.....................................................................................................1965.000.0027.00-4.007.002.006.003.001.002.00----2.00--2.002.00----1.00--1.00----1.00-----1.001.001.00-------1.00---------------------
..................................................................................................................................GACTAGTGATTTTTTTGT......................................................................................................1813.000.002.00-2.00-1.00-1.003.00-3.00----------1.00-----------------------------------------------
...AGCATGTTACTGAACAGC.....................................................................................................................................................................................................................................18113.0013.00-13.00------------------------------------------------------------------
...................................................................................................................................ACTAGTGATTTTTTTGTTA....................................................................................................199.000.003.00-1.00-2.00---1.00-------------1.00-----------------1.00---------------------------
...................................................................................................................................ACTAGTGATTTTTTTGCT.....................................................................................................188.000.005.00-1.00-1.00---1.00-----------------------------------------------------------
...................................................................................................................................ACTAGTGATTTTTTTGTA.....................................................................................................187.000.005.00-1.00------1.00----------------------------------------------------------
...................................................................................................................................ACTAGTGATTTTTTTGAT.....................................................................................................186.000.005.00--1.00----------------------------------------------------------------
..................................................................................................................................GACTAGTGATTTTTTGTT......................................................................................................185.000.005.00-------------------------------------------------------------------
...............................................................................................................................TTTGACTAGTGATTTGT..........................................................................................................174.000.00--------------1.00----1.00-----------------------1.00---1.00--------------------
..................................................................................................................................GACTAGTGATTTTTTTG.......................................................................................................173.000.00------------1.00-------1.00------------------------1.00----------------------
..................................................................................................................................GACTAGTGATTTTTTTGTC.....................................................................................................192.000.00-------------1.00----------------------------------1.00-------------------
...........................................................................................................................................................................GTACATTGCCAAAAAGTGACAGCTCTGA...................................................2812.002.00-----------2.00--------------------------------------------------------
........GTTACTGAACAGCAAAGC................................................................................................................................................................................................................................1812.002.00----------1.00----------------1.00----------------------------------------
................................CAGAAACAGCTAGAACAGA.......................................................................................................................................................................................................1912.001.00---------------------------------------------------1.00--1.00-------------
..................................................................................................................................GACTAGTGATTTTTTTGAT.....................................................................................................192.000.002.00-------------------------------------------------------------------
.........................CATGGTTCAGAAACAGCTAGAACA.........................................................................................................................................................................................................2411.001.00-----------1.00--------------------------------------------------------
...................................................................................................................................ACTAGTGATTTTTTTGTCT....................................................................................................191.000.00------1.00-------------------------------------------------------------
........................GCATGGTTCAGAAACAGCTAGAACAG........................................................................................................................................................................................................2611.001.00-----------------------------------------------------1.00--------------
.........................CATGGTTCAGAAACAGCTAGAAC..........................................................................................................................................................................................................2311.001.00--------------------------------1.00-----------------------------------
..............................TTCAGAAACAGCTAGAACAGAT......................................................................................................................................................................................................221.000.00------------------1.00-------------------------------------------------
...................................................................................................................................ACTAGTGATTTTTTTGATA....................................................................................................191.000.001.00-------------------------------------------------------------------
......................................................................................................................................................................................................................GCAGCCATAACAGCTCCAGTCT..............2211.001.00--------------------------------------------1.00-----------------------
..................................................................................................................................GACTAGTGATTTTTTTGA......................................................................................................181.000.001.00-------------------------------------------------------------------
............CTGAACAGCAAAGCATGGT...........................................................................................................................................................................................................................1911.001.00---------------1.00----------------------------------------------------
..................AGCAAAGCATGGTTCAGAAACAGC................................................................................................................................................................................................................2411.001.00----------1.00---------------------------------------------------------
...................................AAACAGCTAGAACAGGTAATA..................................................................................................................................................................................................2111.001.00--------------1.00-----------------------------------------------------
......ATGTTACTGAACAGCAAAGC................................................................................................................................................................................................................................2011.001.00-------------------------------1.00------------------------------------
..................................................................................................................................GACTAGTGATTTTTTTGTTA....................................................................................................201.000.00----1.00---------------------------------------------------------------
.....CATGTTACTGAACAGCAAAGCATGGTTCAGA......................................................................................................................................................................................................................3111.001.00-----------------------1.00--------------------------------------------
...........................TGGTTCAGAAACAGCTAGAACAGA.......................................................................................................................................................................................................241.000.00---------------------1.00----------------------------------------------
.............................................................................................................................................................................ACATTGCCAAAAAGTGACAGCTCTGAGA.................................................2811.001.00----------------------------------------------------1.00---------------
........................GCATGGTTCAGAAACAGCTAGAACA.........................................................................................................................................................................................................2511.001.00-------------------1.00------------------------------------------------
..................................................................................................................................GACTAGTGATTTTTTACTT.....................................................................................................191.000.001.00-------------------------------------------------------------------
...AGCATGTTACTGAACAGCAA...................................................................................................................................................................................................................................2011.001.00-----------------------------------------1.00--------------------------
................................CAGAAACAGCTAGAACAG........................................................................................................................................................................................................1811.001.00--------------------------1.00-----------------------------------------
..........................................................................................ATGAGTAGAATGTTTTGGTGTG..........................................................................................................................................2211.001.00--------------1.00-----------------------------------------------------
.CAAGCATGTTACTGAAC........................................................................................................................................................................................................................................1711.001.00---------------1.00----------------------------------------------------
........GTTACTGAACAGCAAAGCATGGT...........................................................................................................................................................................................................................2311.001.00----------1.00---------------------------------------------------------
...................................................................................................................................ACTAGTGATTTTTTTATA.....................................................................................................181.000.001.00-------------------------------------------------------------------
..........................................................................................................................................ATTTTTTTTGACTAGTTATT............................................................................................201.000.00-------------------------------------------------------1.00------------
...................................................................................................................................ACTAGTGATTTTTTTATAA....................................................................................................191.000.001.00-------------------------------------------------------------------
........................................................................................................................................TGATTTTTTTTGACTTG.................................................................................................171.000.00------------------------1.00-------------------------------------------
.....................AAAGCATGGTTCAGAGCGC..................................................................................................................................................................................................................191.000.00---------------------------------------1.00----------------------------
.................................AGAAACAGCTAGAACAGAT......................................................................................................................................................................................................191.000.00------------------1.00-------------------------------------------------
.........TTACTGAACAGCAAAGCATGGTA..........................................................................................................................................................................................................................231.000.00----------------------------------1.00---------------------------------
..........TACTGAACAGCAAAGCATG.............................................................................................................................................................................................................................1911.001.00---------------------1.00----------------------------------------------
...............................TCAGAAACAGCTAGAACA.........................................................................................................................................................................................................1821.001.00--------------------------------------------------------0.500.50----------
..AAGCATGTTACTGAACAGCAAA..................................................................................................................................................................................................................................2211.001.00--------------------------------------------------1.00-----------------
...........ACTGAACAGCAAAGCATGGTT..........................................................................................................................................................................................................................2111.001.00-----------------------------------1.00--------------------------------
...................................................................................................................................ACTAGTGATTTTTTTGTTG....................................................................................................191.000.00---------------------------------1.00----------------------------------
.CAAGCATGTTACTGAACAGCAA...................................................................................................................................................................................................................................2211.001.00------------------------------------------1.00-------------------------
.....CATGTTACTGAACAGCAAAGC................................................................................................................................................................................................................................2111.001.00----------------------------1.00---------------------------------------
.........TTACTGAACAGCAAAGC................................................................................................................................................................................................................................1740.250.25------------------------------------------------------------0.25-------
.................................................................................................................................TGACTAGTGATTTTTTTGC......................................................................................................1990.110.110.11-------------------------------------------------------------------
.................................................................................................................................TGACTAGTGATTTTTTT........................................................................................................1790.110.11-------------------------------------------------------------------0.11

Antisense strand
TCAAGCATGTTACTGAACAGCAAAGCATGGTTCAGAAACAGCTAGAACAGGTAATAAATAGGTTTGCAAAATAGAAACTACCAACAATTAATGAGTAGAATGTTTTGGTGTGTTGTTCATTAGTGACTTTGACTAGTGATTTTTTTTGACTAGTATTAAATGGCATTAAAAGTACATTGCCAAAAAGTGACAGCTCTGAGACCTCTTAGTAACTGCAGCCATAACAGCTCCAGTCTTTTACTTAAAGTGA
......................................................................................((((((((((((.((........)).))))))))))))........(((((((......)).))))).................................................................................................
.....................................................................................86.................................................................153...............................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577588(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR343334SRR343336SRR189785SRR038859(GSM458542)
MM386. (cell line)		SRR343337SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................................................................AGTAGAATGTTTTGGGTAG.......................................................................................................................................... 191.000.00------------1.00-------------------------------------------------------
......................................CAGCTAGAACAGGTAATCTG................................................................................................................................................................................................ 201.000.00-----------------------1.00--------------------------------------------
.........................CATGGTTCAGAAACAATT............................................................................................................................................................................................................... 181.000.00-------------------------------------------------1.00------------------
............................................................................................GAGTAGAATGTTTTGGTTG........................................................................................................................................... 191.000.00------------1.00-------------------------------------------------------
........GTTACTGAACAGCAAGAAG............................................................................................................................................................................................................................... 190.500.00--------------------------------------------------------------0.17--0.170.17-
.........................AGCTGTTTCTGAACCATG............................................................................................................................................................................................................... 1840.500.50----------------------------------------------------------0.50---------
........TTGCTGTTCAGTAAC................................................................................................................................................................................................................................... 1560.330.33-------------------------------------------------------------0.17-0.17----
...............................................................................................................................................................................................................................AAAAGACTGGAGCTGT........... 1640.250.25-----------------------------------------------------------0.25--------
........GTTACTGAACAGCAAGAA................................................................................................................................................................................................................................ 180.170.00----------------------------------------------------------------0.17---