ID: uc003wjq.1_intron_0_0_chr7_150929901_f.5p
GENE: CHPF2(1)
chr7:150929851-150930100+


(1)
AGO2.ip 		(3)
B-CELL 		(7)
BRAIN 		(7)
BREAST 		(12)
CELL-LINE 		(4)
CERVIX 		(5)
HEART 		(1)
HELA 		(7)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
ATGCTGTCTCTGGCGCGGCCTCCGCTCCCGCCGACTGGCCTGAGAACGAGGTCTGTGCCCCAGTCTCCCAGCCGCGACCTCCGACCCCGCCTCGCAGAACGACCCGAGCTGGTCTCCCGAGCCCCCTTCTCAGCAGCCCGGTGACGTGGCCAGTTTATTTCTGTTTTGAGACGAACGGCGAAGACTCGCGTCGGGTCTTCGTTCTAGGGCTAGACTTGGTCTCTGATCGCCGAGAGGTAGCGCAGGGGCT
........................................................................(((((.((.((.((.((.(((((((((......((((((((((((((.((...((....))..)).))).))...)))))))))..))))))...))).))...)))).))..)))))............................................................
...................................................................68.........................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM339996(GSM339996)
hues6Neuron. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577743(Rovira)
total RNA. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM532874(GSM532874)
G699T. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
........................................................................................................................................................................AGACGAACGGCGAAGACAA...............................................................197.000.00--7.00-----------------------------------------------------
..........................................................................................................................................................................................................................GTCTCTGATCGCCGAGAGG.............1917.007.007.00-------------------------------------------------------
..................................................................................................................................................................GTTTTGAGACGAACGGCGAAGACT................................................................2417.007.00-----5.001.00-------------------------1.00-----------------------
..........................................................................................................................................................................ACGAACGGCGAAGACTC...............................................................1716.006.00-------3.00-------------------1.00-1.00-------1.00------------------
..........................................AGAACGAGGTCTGTGTGGT.............................................................................................................................................................................................194.000.00-------1.00----1.002.00------------------------------------------
...................................................................................................................................................................TTTTGAGACGAACGGCGAAG...................................................................2013.003.00-2.00-------------1.00----------------------------------------
.....................................................................................................................................................................TTGAGACGAACGGCGAAGACT................................................................2113.003.00---1.00------1.00---------------------------------------1.00-----
........................................................................................................................................................................AGACGAACGGCGAAGACT................................................................1813.003.00-1.00------1.00------1.00----------------------------------------
.............CGCGGCCTCCGCTCCGCCG..........................................................................................................................................................................................................................193.000.00--------------2.00----------------1.00------------------------
..................................CTGGCCTGAGAACGAGGTCTG...................................................................................................................................................................................................2112.002.002.00-------------------------------------------------------
....................................................................................................................................................................TTTGAGACGAACGGCGAAGACT................................................................2212.002.00-1.00-1.00----------------------------------------------------
.....................................................................................................................................................................TTGAGACGAACGGCGAAGAC.................................................................2012.002.00---1.00------------------------------------------1.00---------
........................................................................CGCGACCTCCGACCCGA.................................................................................................................................................................172.000.00------------------1.00--1.00----------------------------------
.......................................................................CCGCGACCTCCGACCCG..................................................................................................................................................................172.000.00----------------2.00---------------------------------------
............................................................................................................................................................................................................TAGGGCTAGACTTGGTCTCTGATCGCCGAG................3012.002.00-------------------2.00------------------------------------
.............................................................................................................................................................TTTCTGTTTTGAGACGAACGGCGAAGAC.................................................................2812.002.00----2.00---------------------------------------------------
..................................................................................................................................................................GTTTTGAGACGAACGGCGAAGA..................................................................2212.002.00---1.00--1.00-------------------------------------------------
.......................................................................................................................................................................GAGACGAACGGCGAAGACT................................................................1912.002.00--------1.00---------------------------------1.00-------------
..................................................................................................................................................................GTTTTGAGACGAACGGCGAA....................................................................2012.002.00-1.00-1.00----------------------------------------------------
......................................................................................................................................................................TGAGACGAACGGCGAAGACT................................................................2012.002.00-1.00--------1.00---------------------------------------------
.................................................................................................................................................................TGTTTTGAGACGAACGGCGAAGACT................................................................2511.001.00--------1.00-----------------------------------------------
.................................................................................................................................................................TGTTTTGAGACGAACGGCGAAG...................................................................2211.001.00---1.00----------------------------------------------------
.......................................................................................................................................................AGTTTATTTCTGTTTTCATT...............................................................................201.000.00----------------------------------------------------1.00---
............GCGCGGCCTCCGCTCAGAC...........................................................................................................................................................................................................................191.000.00-----------1.00--------------------------------------------
..................................................................................................................................................................GTTTTGAGACGAACGGCGAAG...................................................................2111.001.00---1.00----------------------------------------------------
.....................................................................................................................................................................TTGAGACGAACGGCGAAGA..................................................................1911.001.00--------------------1.00-----------------------------------
..............GCGGCCTCCGCTCCCCGGC.........................................................................................................................................................................................................................191.000.00---------1.00----------------------------------------------
....................................................................................................................................................................................................CTTCGTTCTAGGGCTAGAC...................................1911.001.00--------------------1.00-----------------------------------
........................................................................................................................................................................AGACGAACGGCGAAGACTC...............................................................1911.001.00------------1.00-------------------------------------------
................................................................................................................................................................CTGTTTTGAGACGAACGGCGAAGACT................................................................2611.001.00------1.00-------------------------------------------------
..........................................AGAACGAGGTCTGTGTG...............................................................................................................................................................................................171.000.00------------------------------------------------1.00-------
....................................................................................................................................................................TTTGAGACGAACGGCGAAGACTCGCGTC..........................................................2811.001.00------------------1.00-------------------------------------
...................................TGGCCTGAGAACGAGGTCTGTGCCCC.............................................................................................................................................................................................2611.001.00---------------------------------1.00----------------------
.................................................................................................................................................................................................GGTCTTCGTTCTAGGGTA.......................................181.000.00-1.00------------------------------------------------------
................................................................................................................................................................CTGTTTTGAGACGAACGGCGAAGA..................................................................2411.001.00-------------------------------------------1.00------------
................................................................................................................................................................CTGTTTTGAGACGAACGGC.......................................................................1911.001.00------------------------------------1.00-------------------
.........................................GAGAACGAGGTCTGTGCCCC.............................................................................................................................................................................................2011.001.00----------------------1.00---------------------------------
........................................................................CGCGACCTCCGACCCGCCG...............................................................................................................................................................191.000.00------------------------------1.00-------------------------
..................................................................................................................................................................GTTTTGAGACGAACGGCGAAGACTC...............................................................2511.001.00--------1.00-----------------------------------------------
.................................................................................................................................................................TGTTTTGAGACGAACGGCGAAGAC.................................................................2411.001.00--------------------------------------1.00-----------------
............................................................................................................................................................................................................TAGGGCTAGACTTGGTCTCTGATCGCCGAGAGGT............3411.001.00---------1.00----------------------------------------------
.....................................................................................................................................................................TTGAGACGAACGGCGAAGACTCGC.............................................................2411.001.00--------------------------1.00-----------------------------
............GCGCGGCCTCCGCTCTGGC...........................................................................................................................................................................................................................191.000.00-----------1.00--------------------------------------------
..........................................................CCCAGTCTCCCAGCCGC...............................................................................................................................................................................1711.001.00---------------------------------------1.00----------------
.TGCTGTCTCTGGCGCGGC.......................................................................................................................................................................................................................................1811.001.00----------------------------1.00---------------------------
......................................................................................................................................................................TGAGACGAACGGCGAAGACTCGCGTC..........................................................2611.001.00----1.00---------------------------------------------------
...................................................................................................................................................................................................................................CGCCGAGAGGTAGCG........1511.001.00-----------------------1.00--------------------------------
.............................................................................................................................................................TTTCTGTTTTGAGACGAACGGCGAAGA..................................................................2711.001.00-----------------------------------1.00--------------------
.........................................................................................................................................................................................TCGCGTCGGGTCTTCGTTCTAGGGCTAGA....................................2911.001.00----1.00---------------------------------------------------
.......................................................TGCCCCAGTCTCCCAGCCGCGACC...........................................................................................................................................................................2411.001.00------1.00-------------------------------------------------
..............................................................................................................................................................................................TCGGGTCTTCGTTCTAGGGCTAGA....................................2411.001.00----1.00---------------------------------------------------
........................................................................CGCGACCTCCGACCCGCC................................................................................................................................................................181.000.00---------------------------------------------1.00----------
.....................................................................................................................................................................TTGAGACGAACGGCGAAGACTTT..............................................................2311.003.00-------------------------------------------------1.00------
.............................................................................................................................................................................AACGGCGAAGACTCGCGTC..........................................................1911.001.00---------------------------------------------------1.00----
....................................................................................................................................................................TTTGAGACGAACGGCGAAGAC.................................................................2111.001.00-1.00------------------------------------------------------
.....................CCGCTCCCGCCGACTGGC...................................................................................................................................................................................................................1811.001.00---------1.00----------------------------------------------
........................................................................CGCGACCTCCGACCCCACG...............................................................................................................................................................191.000.00---------------------1.00----------------------------------
...............................................................................TCCGACCCCGCCTCGCAGAAC......................................................................................................................................................2111.001.00-1.00------------------------------------------------------
...................................................................................................................................................................TTTTGAGACGAACGGCGAAGAC.................................................................2211.001.00----------------------------------------1.00---------------
........................................................................CGCGACCTCCGACCCGAC................................................................................................................................................................181.000.00-----------------------------------------1.00--------------
......................................................................................................................................................................TGAGACGAACGGCGAAGAC.................................................................1911.001.00--------------------------------------------1.00-----------
..........................................AGAACGAGGTCTGTGGGGT.............................................................................................................................................................................................191.000.00------------1.00-------------------------------------------
............GCGCGGCCTCCGCTCGGA............................................................................................................................................................................................................................181.000.00-----------1.00--------------------------------------------
.......................................................................................................................................................................GAGACGAACGGCGAAGAC.................................................................1811.001.00----------1.00---------------------------------------------
.....................................................................................................................CGAGCCCCCTTCTCAGC....................................................................................................................1720.500.50----------------------0.50---------------------------------
.............................GCCGACTGGCCTGAG..............................................................................................................................................................................................................1540.250.25------------------------------------------------------0.25-

Antisense strand
ATGCTGTCTCTGGCGCGGCCTCCGCTCCCGCCGACTGGCCTGAGAACGAGGTCTGTGCCCCAGTCTCCCAGCCGCGACCTCCGACCCCGCCTCGCAGAACGACCCGAGCTGGTCTCCCGAGCCCCCTTCTCAGCAGCCCGGTGACGTGGCCAGTTTATTTCTGTTTTGAGACGAACGGCGAAGACTCGCGTCGGGTCTTCGTTCTAGGGCTAGACTTGGTCTCTGATCGCCGAGAGGTAGCGCAGGGGCT
........................................................................(((((.((.((.((.((.(((((((((......((((((((((((((.((...((....))..)).))).))...)))))))))..))))))...))).))...)))).))..)))))............................................................
...................................................................68.........................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM339996(GSM339996)
hues6Neuron. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577743(Rovira)
total RNA. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM532874(GSM532874)
G699T. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR040024(GSM532909)
G613N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
..............................................................................................................................TTCTCAGCAGCCCGGC............................................................................................................ 161.000.00------------------------1.00-------------------------------
...............CGGCCTCCGCTCCCGCCAGAT...................................................................................................................................................................................................................... 211.000.00-------------------------1.00------------------------------
...............GTCGGCGGGAGCGGAGGCCG....................................................................................................................................................................................................................... 2011.001.001.00-------------------------------------------------------
...................................................................................................................CCCGAGCCCCCTTCTCGACA................................................................................................................... 201.000.00----------------------------------1.00---------------------
..................CGGCGGGAGCGGAGG......................................................................................................................................................................................................................... 1550.400.40-----------------------------------------------------0.40--
...............CGGGAGCGGAGGCCG............................................................................................................................................................................................................................ 1560.170.17-------------------------------------------------------0.17