ID: uc003wjo.1_intron_3_0_chr7_150912819_r
GENE: ABCF2(12)
chr7:150912769-150913102-


(1)
AGO1.ip 		(5)
B-CELL 		(2)
BREAST 		(14)
CELL-LINE 		(1)
FIBROBLAST 		(4)
HEART 		(3)
HELA 		(2)
LIVER 		(3)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
ATGGCATGATCCGAAAACACTCTCATGTCAAGATAGGGCGTTACCATCAGGTACAGGCCTGGGGTTGGGATCCGGGGAATTGCCCAGGGTATAGGGAGGGGCTGTATCTGGCTGAGTTCCAGCCAGCCGCCCCCACCCCCTGGCAGGAATTCCAGCCTAGGTGGCTCCTACCTGCTTCTTGAACCCAGAACAGGTGCCTGGGATAGAAATAGGAAGTTACCTAGTAGGGTTTATTTTGAAGCGGGATGCCAGTCACACCCGGGTGGCTTCCATTTTTCCTGTAGCATTTACAAGAGCAGCTGGACTTAGATCTCTCACCTTTGGAGTACATGAT
...............................................((((((..((((..((((((((((((.......((.((((((....((..(((((.....(((((((.....)))))))..)))))..))))))))))))).)))))))))....))))..)))))).....(((((((....(((....))).........((((......))))...))))))).....................................................................................................
............................................45..........................................................................................................................................................................................233...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................GGTACAGGCCTGGGGGACC..........................................................................................................................................................................................................................................................................1913.000.0013.00------------------------------------------
.................................................GGTACAGGCCTGGGGGACT..........................................................................................................................................................................................................................................................................1911.000.0011.00------------------------------------------
...............................................................................................................................................................................................................AATAGGAAGTTACCTAGTAGGG.........................................................................................................2219.009.00-9.00-----------------------------------------
...........................................................................................................................................................................................................................................................................................GCATTTACAAGAGCAGCTGGACTTAGAC.......................289.000.00--9.00----------------------------------------
.................................................GGTACAGGCCTGGGGGCCA..........................................................................................................................................................................................................................................................................198.000.008.00------------------------------------------
.................................................GGTACAGGCCTGGGGGAAA..........................................................................................................................................................................................................................................................................197.000.007.00------------------------------------------
......................................................................................................................................................................................................................................TTATTTTGAAGCGGGTGC......................................................................................186.000.00-6.00-----------------------------------------
.................................TAGGGCGTTACCATCAG............................................................................................................................................................................................................................................................................................1714.004.00---4.00---------------------------------------
.................................................GGTACAGGCCTGGGGGCC...........................................................................................................................................................................................................................................................................183.000.003.00------------------------------------------
.................................................GGTACAGGCCTGGGGGAT...........................................................................................................................................................................................................................................................................183.000.003.00------------------------------------------
....................................................................................................................................................................................................................................................................................................AGAGCAGCTGGACTTAGAT.......................1922.502.50-----2.50-------------------------------------
.................................................GGTACAGGCCTGGGGGAA...........................................................................................................................................................................................................................................................................182.000.002.00------------------------------------------
................................................................................................................................................................................................................................................................................................TACAAGAGCAGCTGGACTTAGA........................2222.002.00---1.001.00--------------------------------------
.....................................................................................................................................................................................................................AAGTTACCTAGTAGGGTTTATTTTGAAGCGGGATGCCAGTCACACCCGGGTGGCTTCCATTTTTCCTGTAG..................................................7112.002.00-------------1.00----------1.00------------------
........................ATGTCAAGATAGGGCGTTA...................................................................................................................................................................................................................................................................................................1912.002.00------2.00------------------------------------
...............................................CAGGTACAGGCCTGGGGGACA..........................................................................................................................................................................................................................................................................212.000.001.00-------------------1.00----------------------
................................................................................................................................................................................................................................................................................................TACAAGAGCAGCTGGACTTAGAT.......................2322.002.00----1.50-----0.50--------------------------------
.................................................GGTACAGGCCTGGGGGCAA..........................................................................................................................................................................................................................................................................192.000.002.00------------------------------------------
...........................................................................................................................................................................................................................................................................................GCATTTACAAGAGCAGCTGGAC.............................2221.501.50-----------1.50-------------------------------
................................................................................................................................................................................................................................................................................................TACAAGAGCAGCTGGACTTAGATC......................2421.501.50----1.00----0.50---------------------------------
.................................................................................................................................................................................................................................................................................................ACAAGAGCAGCTGGACTTAGATCT.....................2421.501.50----1.00----0.50---------------------------------
........................................................................................................................AGCCAGCCGCCCCCACCAGC..................................................................................................................................................................................................201.000.00-------------------1.00-----------------------
...............................................CAGGTACAGGCCTGGGGGAC...........................................................................................................................................................................................................................................................................201.000.00--------------1.00----------------------------
.................................................GGTACAGGCCTGGGGGGAA..........................................................................................................................................................................................................................................................................191.000.001.00------------------------------------------
...........................................................................................................................................................................................................................................................................................GCATTTACAAGAGCAGCTGGACTTAAAC.......................281.000.00--1.00----------------------------------------
.................................................GGTACAGGCCTGGGGGATA..........................................................................................................................................................................................................................................................................191.000.001.00------------------------------------------
.........................................................................................TATAGGGAGGGGCTGTATCTCTG..............................................................................................................................................................................................................................231.000.00-------------------------1.00-----------------
...............................................................................................................................................................................................................................................................CACCCGGGTGGCTTCCATTTTT.........................................................2211.001.00----------------------1.00--------------------
.........................................................................................................................................................................................................................................................................................................AGCTGGACTTAGATCTCTCACC...............2211.001.00-------1.00-----------------------------------
..................................................................................................................................................................................................................................................................................................................TAGATCTCTCACCTTTGGAGTA......2211.001.00------------1.00------------------------------
.................................................GGTACAGGCCTGGGGGACG..........................................................................................................................................................................................................................................................................191.000.001.00------------------------------------------
....................................................................................................................................................................................................................................................................................................AGAGCAGCTGGACTTAGA........................1831.001.00----0.33--0.33----0.33------------------------------
.................................................GGTACAGGCCTGGGGTAC...........................................................................................................................................................................................................................................................................181.000.001.00------------------------------------------
......................TCATGTCAAGATAGGGCGTT....................................................................................................................................................................................................................................................................................................2011.001.00------------------1.00------------------------
..................................AGGGCGTTACCATCAGCATT........................................................................................................................................................................................................................................................................................201.000.00--------------------------1.00----------------
....................................................ACAGGCCTGGGGTTGGGGGGA.....................................................................................................................................................................................................................................................................211.000.00---------------------1.00---------------------
.......................................................................................................................................................................................................................................................................................................GCAGCTGGACTTAGATCTCTCA.................2211.001.00-----------------1.00-------------------------
...........................................................................................................................................................................................................................................................................................................CTGGACTTAGATCTCTCACCTTTGGAGT.......2811.001.00---------------1.00---------------------------
...................................................................................................................................................................................................................................................................................................AAGAGCAGCTGGACTTAGATCTCTCACC...............2811.001.00-------1.00-----------------------------------
...........................................................................................................................................................................................................................................................................................................CTGGACTTAGATCTCTCACCTTTGGAGTA......2911.001.00-----------------------1.00-------------------
.................................................GGTACAGGCCTGGGGGAGA..........................................................................................................................................................................................................................................................................191.000.001.00------------------------------------------
...........................................................................................................................................................................................................................................................................................................CTGGACTTAGATCTCTGC.................181.000.00----------------------------1.00--------------
..................................AGGGCGTTACCATCAGCAT.........................................................................................................................................................................................................................................................................................191.000.00---------------------------1.00---------------
................................................AGGTACAGGCCTGGGGGACA..........................................................................................................................................................................................................................................................................201.000.001.00------------------------------------------
.............................................................................................................................................................................................................................................................................................ATTTACAAGAGCAGCTGGACTTA..........................2320.500.50---------------------------------0.50---------
...............................................................................................................................................................................................................................................................................................TTACAAGAGCAGCTGGACTTAGA........................2320.500.50----------0.50--------------------------------
...................................................................................................................................................................................................................................................................................................AAGAGCAGCTGGACTTAGATC......................2120.500.50-------------------------------0.50-----------
..............................................................................................................................................................................................................................................................................................TTTACAAGAGCAGCTGGACTTAGAT.......................2520.500.50-----0.50-------------------------------------
............................................................................................................................................................................................................................................................................................CATTTACAAGAGCAGCTGGACTTAGA........................2620.500.50--------------------------------0.50----------
................................................................................................................................................................................................................................................................................................TACAAGAGCAGCTGGACTTAGATCTC....................2620.500.50-----------------------------------0.50-------
................................................................................................................................................................................................................................................................................................TACAAGAGCAGCTGGACTTA..........................2020.500.50----------------------------------0.50--------
...............................................................................................................................................................................................................................................................................................TTACAAGAGCAGCTGGACTTAGAT.......................2420.500.50-------------------------------------0.50-----
...................................................................................................................................................................................................................................................................................................AAGAGCAGCTGGACTTAGATCT.....................2220.500.50---------0.50---------------------------------
.................................................................................................................................................................................................................................................................................................ACAAGAGCAGCTGGACTTAG.........................2020.500.50-----0.50-------------------------------------
................................................................................................................................................................................................................................................................................................TACAAGAGCAGCTGGACTTAG.........................2120.500.50----------0.50--------------------------------
.............................................................................................................................................................................................................................................................................................ATTTACAAGAGCAGCTGG...............................1820.500.50------0.50------------------------------------
.....................................................................................................................................................................................................................................................................................................GAGCAGCTGGACTTAGATC......................1920.500.50------------------------------0.50------------
....................................................................................................................................................................................................................................................................................................AGAGCAGCTGGACTTAGATCT.....................2120.500.50-----------------------------0.50-------------
.................................................................................................................................................................................................................................................................................................ACAAGAGCAGCTGGACTT...........................1820.500.50------0.50------------------------------------
............................................................................................................................................................................................................................................................................................CATTTACAAGAGCAGCTGGACTTAGAT.......................2720.500.50------------------------------------0.50------
................................................................................................................................................................................................................................................................................................TACAAGAGCAGCTGGACTTAGATT......................2420.502.00--------------------------------------0.50----
......................................................................................................................................................................................................................................................................................................AGCAGCTGGACTTAGAT.......................1730.330.33---------------------------------------0.33---
.......................................................................................................GTATCTGGCTGAGTTC.......................................................................................................................................................................................................................1630.330.33----------------------------------------0.33--
.................................................................................................................................................................................................................................................................................................ACAAGAGCAGCTGGACT............................1730.330.33---------0.33---------------------------------
.............................................................................................................................GCCGCCCCCACCCCCTG................................................................................................................................................................................................1750.200.20-----------------------------------------0.20-
................................................................................TGCCCAGGGTATAGG...............................................................................................................................................................................................................................................1580.120.12------------------------------------------0.12

Antisense strand
ATGGCATGATCCGAAAACACTCTCATGTCAAGATAGGGCGTTACCATCAGGTACAGGCCTGGGGTTGGGATCCGGGGAATTGCCCAGGGTATAGGGAGGGGCTGTATCTGGCTGAGTTCCAGCCAGCCGCCCCCACCCCCTGGCAGGAATTCCAGCCTAGGTGGCTCCTACCTGCTTCTTGAACCCAGAACAGGTGCCTGGGATAGAAATAGGAAGTTACCTAGTAGGGTTTATTTTGAAGCGGGATGCCAGTCACACCCGGGTGGCTTCCATTTTTCCTGTAGCATTTACAAGAGCAGCTGGACTTAGATCTCTCACCTTTGGAGTACATGAT
...............................................((((((..((((..((((((((((((.......((.((((((....((..(((((.....(((((((.....)))))))..)))))..))))))))))))).)))))))))....))))..)))))).....(((((((....(((....))).........((((......))))...))))))).....................................................................................................
............................................45..........................................................................................................................................................................................233...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........ATCCGAAAACACTCTA...................................................................................................................................................................................................................................................................................................................... 161.000.00----------------1.00--------------------------