ID: uc003wby.1_intron_8_0_chr7_142625330_r
GENE: TRPV5(6)
chr7:142625280-142625835-


(1)
AGO1.ip OTHER.mut
(1)
AGO2.ip
(5)
B-CELL
(7)
BRAIN
(7)
BREAST
(6)
CELL-LINE
(4)
CERVIX
(1)
HEART
(2)
LIVER
(4)
OTHER
(3)
SKIN
(1)
UTERUS

Sense strand
ACCAGGGTCTCACCCCCTTCAAGCTGGCTGGAGTGGAGGGTAACACTGTGGTAAGAGACGCTCCCCATCCCTGAGGTGTCTTTCTAATGACCCTCAACCTATCCTGCTGGCCCTGGGAGAAATAGAGGTGAAGGGCCCACCTTTCTCTAAAATCCCTTTTCCCCAAACTCCCCAAAGGGATGGTGGTCCCTTGCTTCCTATTCCATCACTGAAATCTTCAGCTTCATGGTCCTTGACTCAAGAGGATTTGAGAACCTTACCTTAATGCATGTGCTGTGATAACCCAAAGCTCTAGCTTCCTTTGCCTATTTTCTTCTTTCTGCACTTTCTGGGGTTTTGGAGCAGGAAAGATGACAAAAAAGGGAAAGCTTGTAGATGCAGAGGTTTGCTGGTTCCCACTGTCTGTCTGTCTCAAGGGTTGGGCAACTGGCTCCATCCAATGGAGTTGTTCTCCTCGACCACCTTCTCACACGTTGGCCCCCTGACTCATCCTGGTGGTCTCTCAGATGTTCCAGCACCTGATGCAGAAGCGGAGGCACATCCAGTGGACGTATGG
...............................................................................................................................................................................................................................................................................................................................................................................................................................((((.((((.....)))).))))...((((.....))))..(((((((.........(((((....))))).......)))))))........................................................
......................................................................................................................................................................................................................................................................................................................................................................................................................407................................................................................................506................................................
SizePerfect hitTotal NormPerfect NormSRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR040009(GSM532894)
G727T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532874(GSM532874)
G699T. (cervix)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040011(GSM532896)
G529T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577453(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR343334
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGGAGA..............................................................................................................................................................................................................21113.001.0012.00-----1.00---------------------------------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGGAGT..............................................................................................................................................................................................................21110.001.005.00-----1.00-1.001.00-----------------------1.001.00-----
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGG.................................................................................................................................................................................................................1819.001.00--1.001.002.00-------1.00----1.00--------1.00--1.00--1.00-------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGGA................................................................................................................................................................................................................1913.001.002.00---1.00-----------------------------------
..........................................................................................................................................................................................................................................................................................................................................GGGGTTTTGGAGCAGGGAGG..............................................................................................................................................................................................................202.000.00-1.00-----1.00--------------------------------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGGAG...............................................................................................................................................................................................................2012.001.001.00------------------1.00--------------------
..........................................................................................................................................................................................................................................................................................................................................GGGGTTTTGGAGCAGGGAGA..............................................................................................................................................................................................................202.000.00-1.00--------------1.00-----------------------
..........................................................................................................................................................................................................................................................................................................................................GGGGTTTTGGAGCAGGGAG...............................................................................................................................................................................................................192.000.00-2.00--------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GGGGTTTTGGAGCAGGGA................................................................................................................................................................................................................182.000.00-2.00--------------------------------------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGGG................................................................................................................................................................................................................1912.001.00---1.00------------------------1.00-----------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGTA................................................................................................................................................................................................................1911.001.00-----1.00----------------------------------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGTAGT..............................................................................................................................................................................................................2111.001.00-------------------------------1.00--------
.........................GGCTGGAGTGGAGGGTGCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------------------------1.00---------------
.......................................................................................................................................................................................................................................................................................................................................................AGGAAAGATGACAAAAAAAAG................................................................................................................................................................................................211.000.00---1.00------------------------------------
..................................................................ATCCCTGAGGTGTCTCCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------1.00--------------------------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGG..................................................................................................................................................................................................................1711.001.00---------1.00------------------------------
..........................................................................................................................................................................................................................................................................................................................................GGGGTTTTGGAGCAGTGTG...............................................................................................................................................................................................................191.000.00-------1.00--------------------------------
.........................GGCTGGAGTGGAGGGTATAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.001.00---------------------------------------
..........................................................................................................................................................................................................................................................................................................................................GGGGTTTTGGAGCAGGGTG...............................................................................................................................................................................................................191.000.00-1.00--------------------------------------
........................................................................................................................................................................................................................................................................................................................................CTGGGGTTTTGGAGCGGG..................................................................................................................................................................................................................181.000.00--1.00-------------------------------------
........................................................................................................................................................................................................................................................................................................................................CTGGGGTTTTGGAGCCTGT.................................................................................................................................................................................................................191.000.00--1.00-------------------------------------
................................................................................TTTCTAATGACCCTCGATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------1.00-------------------
........................................TAACACTGTGGTAAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00---------------1.00------------------------
..........................................................................................................................................................................................................................................................................................................................................GGGGTTTTGGAGCAGGGGG...............................................................................................................................................................................................................191.000.00-1.00--------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCATCCAATGGAAG..............................................................................................................171.000.00---------------------1.00------------------
..........................................................................................................................................................................................................................................................................................................................................GGGGTTTTGGAGCAGTGA................................................................................................................................................................................................................181.000.00-1.00--------------------------------------
........................................................................................................................................................................................................................................................................ATGCATGTGCTGTGACGCA.................................................................................................................................................................................................................................................................................191.000.00----------------------1.00-----------------
..........................................................................................................CTGGCCCTGGGAGAATTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----1.00----------------------------------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGTGGT..............................................................................................................................................................................................................2111.001.00--------1.00-------------------------------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGAGA................................................................................................................................................................................................................191.000.00------------------1.00---------------------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGGTGT..............................................................................................................................................................................................................2111.001.001.00---------------------------------------
.........................................................................................................................................................................................................................................................................................................................TTCTTTCTGCACTTTCTACG...............................................................................................................................................................................................................................201.000.00--------------1.00-------------------------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCAGGGGGA..............................................................................................................................................................................................................2111.001.001.00---------------------------------------
.........................GGCTGGAGTGGAGGGGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------------------1.00---------
.................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGGCAACTGGCTC...........................................................................................................................1620.500.50------------------------------------0.50---
....................................................................................................................................................................................................CCTATTCCATCACTG.........................................................................................................................................................................................................................................................................................................................................................1580.380.38--------------------------------------0.250.12
........................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGGGTTGGG.....................................................................................................................................1550.200.20-----------0.20----------------------------
.........................................................................................................................................................................................................................................................................................................................................TGGGGTTTTGGAGCA....................................................................................................................................................................................................................1580.120.12------------------------------------0.12---

Antisense strand
ACCAGGGTCTCACCCCCTTCAAGCTGGCTGGAGTGGAGGGTAACACTGTGGTAAGAGACGCTCCCCATCCCTGAGGTGTCTTTCTAATGACCCTCAACCTATCCTGCTGGCCCTGGGAGAAATAGAGGTGAAGGGCCCACCTTTCTCTAAAATCCCTTTTCCCCAAACTCCCCAAAGGGATGGTGGTCCCTTGCTTCCTATTCCATCACTGAAATCTTCAGCTTCATGGTCCTTGACTCAAGAGGATTTGAGAACCTTACCTTAATGCATGTGCTGTGATAACCCAAAGCTCTAGCTTCCTTTGCCTATTTTCTTCTTTCTGCACTTTCTGGGGTTTTGGAGCAGGAAAGATGACAAAAAAGGGAAAGCTTGTAGATGCAGAGGTTTGCTGGTTCCCACTGTCTGTCTGTCTCAAGGGTTGGGCAACTGGCTCCATCCAATGGAGTTGTTCTCCTCGACCACCTTCTCACACGTTGGCCCCCTGACTCATCCTGGTGGTCTCTCAGATGTTCCAGCACCTGATGCAGAAGCGGAGGCACATCCAGTGGACGTATGG
...............................................................................................................................................................................................................................................................................................................................................................................................................................((((.((((.....)))).))))...((((.....))))..(((((((.........(((((....))))).......)))))))........................................................
......................................................................................................................................................................................................................................................................................................................................................................................................................407................................................................................................506................................................
SizePerfect hitTotal NormPerfect NormSRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR040009(GSM532894)
G727T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532874(GSM532874)
G699T. (cervix)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040011(GSM532896)
G529T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
TAX577453(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335SRR343334
..........................................................CGCTCCCCATCCCTGGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------------1.00--------------
....................................................................................................................................................................................................................................................................................................................................................................AAAAAGGGAAAGCTTGTACT.................................................................................................................................................................................... 201.000.00-----------------------------------1.00----
..............................................................................................................................................................................................................................................................................................................................................TTTTGGAGCAGGAAAAGAT........................................................................................................................................................................................................... 191.000.00--1.00-------------------------------------
...........................................................................................................................................................................................................................AGCTTCATGGTCCTTGTGGG............................................................................................................................................................................................................................................................................................................................. 201.000.001.00---------------------------------------
...............................TCTTACCACAGTGTTACCCTCCACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2511.001.00---------------------------1.00------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAACGTGTGAGAAGGTGGTCGAGGAGA.............................................................................. 2911.001.00-----------------------1.00----------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCCTCGACCACTCTG.......................................................................................... 191.000.00-----------1.00----------------------------
.................................................................................................................................................................................................................................................................................................................................................................ACAAAAAAGGGAAAGCTTTTA...................................................................................................................................................................................... 211.000.00----------1.00-----------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGTCGAGGAGA............................................................................................ 1520.500.50-------------------------------------0.50--
......................................................................................................................................................................................................................................................................................AGAGCTTTGGGTTAT....................................................................................................................................................................................................................................................................... 1590.330.33----------0.33-----------------------------