ID: uc003vwe.3_intron_1_0_chr7_140710461_r.5p
GENE: (1)
chr7:140714511-140714760-


(14)
B-CELL 		(2)
BRAIN 		(8)
BREAST 		(32)
CELL-LINE 		(9)
CERVIX 		(1)
HEART 		(4)
HELA 		(1)
KIDNEY 		(7)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(14)
SKIN 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
GGGCGGGCCTTCCGGGACGAGGGCGCGTGGGTGAGGAAGGTCAGGTCTAGGTAAGGCTGTCGGTGACTTTGGGGGTCTGCAGCAAGGGGCGATGGCTGCGAAGTCTACGGGGGTCTCCAACCTTGTAGAGTCGCCAGGAATAGGGCGAATCCACTTCATTAGTGACCAGCTCGGGCGGTTCACGTGCATCACACAAATAACTTGGCCTTTTTCTGCCTCAGTTGGGGGATTTCTTAAACGTAGAATACCC
.......................................................(((.(((..(((((((.((.((....((.....))...)))).)))))))..))).)))........................................................................................................................................
.......................................................56...............................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532889(GSM532889)
G576N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM532880(GSM532880)
G659T. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR040023(GSM532908)
G575T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		GSM532890(GSM532890)
G576T. (cervix)		GSM339994(GSM339994)
hues6. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR040017(GSM532902)
G645T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)
.......................................GTCAGGTCTAGGTAAGGC.................................................................................................................................................................................................18127.0027.009.002.002.006.005.00--------------------2.00-----------------------------------1.00-------------------------------------
..............................GTGAGGAAGGTCAGGTCTAGGTAAG...................................................................................................................................................................................................25126.0026.00-----16.0010.00--------------------------------------------------------------------------------------------
........................................TCAGGTCTAGGTAAGGC.................................................................................................................................................................................................17124.0024.00-19.00--5.00----------------------------------------------------------------------------------------------
.......................CGCGTGGGTGAGGAAGGT.................................................................................................................................................................................................................18113.0013.001.00------3.00----1.00---------------1.00---------------1.00----------1.00----1.00-----1.00-1.00--------------1.00-1.00-------------
....................................AAGGTCAGGTCTAGGTAAGG..................................................................................................................................................................................................20112.0012.007.00-4.00-1.00----------------------------------------------------------------------------------------------
............................................................CGGTGACTTTGGGGGTCTGC..........................................................................................................................................................................20110.0010.00---10.00-----------------------------------------------------------------------------------------------
..........................................................GTCGGTGACTTTGGGGGTC.............................................................................................................................................................................1917.007.00---7.00-----------------------------------------------------------------------------------------------
..........................................................GTCGGTGACTTTGGGGGT..............................................................................................................................................................................1815.005.002.00-----------2.00---------------------------------------1.00----------------------------------------------
.......................................GTCAGGTCTAGGTAAGGCTG...............................................................................................................................................................................................2015.005.002.00-1.00-----------1.00-------------------------------1.00----------------------------------------------------
............................................GTCTAGGTAAGGCTGTCGGTGAC.......................................................................................................................................................................................2315.005.00-5.00-------------------------------------------------------------------------------------------------
.......................................................GCTGTCGGTGACTTTGGGGGT..............................................................................................................................................................................2114.004.00--3.00-----------------------1.00------------------------------------------------------------------------
.....................................AGGTCAGGTCTAGGTAAGGC.................................................................................................................................................................................................2014.004.002.00-1.00-1.00----------------------------------------------------------------------------------------------
.......................................GTCAGGTCTAGGTAAGG..................................................................................................................................................................................................1714.004.00--2.002.00-----------------------------------------------------------------------------------------------
.......................................................GCTGTCGGTGACTTTGGGGG...............................................................................................................................................................................2014.004.003.00-1.00------------------------------------------------------------------------------------------------
..................GAGGGCGCGTGGGTGGGGG.....................................................................................................................................................................................................................194.000.00----------------------------------------1.00----------------------1.00------------1.00----------1.00-----------
..............................................................GTGACTTTGGGGGTCTGCAG........................................................................................................................................................................2013.003.003.00--------------------------------------------------------------------------------------------------
.........................................CAGGTCTAGGTAAGGCTGTCGG...........................................................................................................................................................................................2213.003.003.00--------------------------------------------------------------------------------------------------
...CGGGCCTTCCGGGACGAGGG...................................................................................................................................................................................................................................2013.003.001.00--2.00-----------------------------------------------------------------------------------------------
.......................................GTCAGGTCTAGGTAAGGCT................................................................................................................................................................................................1913.003.002.00-----------------------------------1.00--------------------------------------------------------------
..GCGGGCCTTCCGGGACGAGGGCGC................................................................................................................................................................................................................................2412.002.00-----------------------------------1.00--------------------------------------1.00------------------------
....................GGGCGCGTGGGTGAGGAAGGT.................................................................................................................................................................................................................2112.002.00----------------------2.00----------------------------------------------------------------------------
....................................................AAGGCTGTCGGTGACTTTGG..................................................................................................................................................................................2012.002.00--2.00------------------------------------------------------------------------------------------------
.........................................CAGGTCTAGGTAAGGCTGTCGGT..........................................................................................................................................................................................2312.002.00----1.00-----------------------------------------------------------------------------1.00----------------
...CGGGCCTTCCGGGACGAGGGCGCGTGGGTGAGGAAGGTCAGGTCTAGGTAAGGCTG...............................................................................................................................................................................................5612.002.00---------------------2.00-----------------------------------------------------------------------------
...........CCGGGACGAGGGCGCGTGGGT..........................................................................................................................................................................................................................2112.002.00----------------------------------1.00-------1.00--------------------------------------------------------
.............................................TCTAGGTAAGGCTGTCGG...........................................................................................................................................................................................1812.002.00---------------1.00---------------------------------------------------------1.00-------------------------
..............................................................GTGACTTTGGGGGTCTGC..........................................................................................................................................................................1812.002.00--2.00------------------------------------------------------------------------------------------------
.....................GGCGCGTGGGTGAGGAAGGT.................................................................................................................................................................................................................2012.002.00-1.00-----------1.00-------------------------------------------------------------------------------------
...................AGGGCGCGTGGGTGAGGA.....................................................................................................................................................................................................................1812.002.00-------------1.00---------------1.00---------------------------------------------------------------------
............................................GTCTAGGTAAGGCTGTCGGG..........................................................................................................................................................................................202.000.002.00--------------------------------------------------------------------------------------------------
.................................AGGAAGGTCAGGTCTAGGT......................................................................................................................................................................................................1912.002.00--------------------2.00------------------------------------------------------------------------------
......................................GGTCAGGTCTAGGTAAGGC.................................................................................................................................................................................................1912.002.00-2.00-------------------------------------------------------------------------------------------------
......................GCGCGTGGGTGAGGAAGGT.................................................................................................................................................................................................................1912.002.00---------2.00-----------------------------------------------------------------------------------------
..............................GTGAGGAAGGTCAGGTCTA.........................................................................................................................................................................................................1912.002.00--------------------------1.00-------1.00----------------------------------------------------------------
...............................................TAGGTAAGGCTGTCGGTGAC.......................................................................................................................................................................................2012.002.00--2.00------------------------------------------------------------------------------------------------
...........CCGGGACGAGGGCGCGTGGGTGAGG......................................................................................................................................................................................................................2512.002.00--2.00------------------------------------------------------------------------------------------------
.....................................AGGTCAGGTCTAGGTAAGG..................................................................................................................................................................................................1912.002.001.00-1.00------------------------------------------------------------------------------------------------
.....................................AGGTCAGGTCTAGGTAAG...................................................................................................................................................................................................1812.002.00-2.00-------------------------------------------------------------------------------------------------
............................................GTCTAGGTAAGGCTGTCGGTG.........................................................................................................................................................................................2112.002.00--1.00---------------------------------------------------1.00--------------------------------------------
.................................................................................................................................GTCGCCAGGAATAGGG.........................................................................................................1612.002.00-1.00--1.00----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TTGGGGGATTTCTTAAACGTAGAATA...2612.002.00--2.00------------------------------------------------------------------------------------------------
...................................GAAGGTCAGGTCTAGGTAAGGCTGT..............................................................................................................................................................................................2512.002.00--2.00------------------------------------------------------------------------------------------------
...........................................GGTCTAGGTAAGGCTGTCGG...........................................................................................................................................................................................2012.002.00--------------------------------1.00-----------------------------------------------1.00------------------
.................................................................ACTTTGGGGGTCTGCAGCAAGGG..................................................................................................................................................................2312.002.00-------------------------------------1.00-------------------------------------------1.00-----------------
..........................................................GTCGGTGACTTTGGGGG...............................................................................................................................................................................1712.002.001.00-------------------------------------------------1.00------------------------------------------------
................................................AGGTAAGGCTGTCGGTGA........................................................................................................................................................................................1812.002.00-------------1.00---------------------------1.00---------------------------------------------------------
.........................................CAGGTCTAGGTAAGGC.................................................................................................................................................................................................1612.002.00-2.00-------------------------------------------------------------------------------------------------
..........................................................GTCGGTGACTTTGGGGGTCTG...........................................................................................................................................................................2112.002.002.00--------------------------------------------------------------------------------------------------
....................................AAGGTCAGGTCTAGGTAAGGCTGTCGG...........................................................................................................................................................................................2712.002.00--2.00------------------------------------------------------------------------------------------------
...............................................................................................CTGCGAAGTCTACGGGGGTCTC.....................................................................................................................................2211.001.00---------------------------------------------1.00-----------------------------------------------------
.................CGAGGGCGCGTGGGTCGGG......................................................................................................................................................................................................................191.000.00------------------------------1.00--------------------------------------------------------------------
.......................CGCGTGGGTGAGGAAGGTC................................................................................................................................................................................................................1911.001.00---------1.00-----------------------------------------------------------------------------------------
...............................................................................................CTGCGAAGTCTACGGGGGCC.......................................................................................................................................2011.001.00------------------------------------------------------------------------------------------1.00--------
...............................................................................................CTGCGAAGTCTACGGGGG.........................................................................................................................................1811.001.00--1.00------------------------------------------------------------------------------------------------
............................................GTCTAGGTAAGGCTGTCGGGGA........................................................................................................................................................................................221.000.00-----------1.00---------------------------------------------------------------------------------------
.................................AGGAAGGTCAGGTCTAGGTAAGGC.................................................................................................................................................................................................2411.001.001.00--------------------------------------------------------------------------------------------------
.................................AGGAAGGTCAGGTCTAGGTA.....................................................................................................................................................................................................2011.001.00----1.00----------------------------------------------------------------------------------------------
..............................................CTAGGTAAGGCTGTCGGGG.........................................................................................................................................................................................191.000.001.00--------------------------------------------------------------------------------------------------
................ACGAGGGCGCGTGGGTGAGGAAGGCC................................................................................................................................................................................................................261.000.00----------1.00----------------------------------------------------------------------------------------
.......................................................GCTGTCGGTGACTTTGGGG................................................................................................................................................................................1911.001.00--1.00------------------------------------------------------------------------------------------------
....................................................AAGGCTGTCGGTGACTCT....................................................................................................................................................................................181.000.00----------------1.00----------------------------------------------------------------------------------
.............GGGACGAGGGCGCGTGGGTGAGG......................................................................................................................................................................................................................2311.001.00------------------1.00--------------------------------------------------------------------------------
.................CGAGGGCGCGTGGGTGAGGAAGGT.................................................................................................................................................................................................................2411.001.00-------------------------------------------1.00-------------------------------------------------------
......................................................................GGGGGTCTGCAGCAAGTTTT................................................................................................................................................................201.000.00---------------------------------------------------------------------1.00-----------------------------
........................................TCAGGTCTAGGTAAGGCTGTCGGTGACTTTGGGGGTCTGCAGCAAGGGGCGATGGCTGC.......................................................................................................................................................5911.001.00---------------------1.00-----------------------------------------------------------------------------
................................................AGGTAAGGCTGTCGGTG.........................................................................................................................................................................................1711.001.00-1.00-------------------------------------------------------------------------------------------------
......................................GGTCAGGTCTAGGTAAGG..................................................................................................................................................................................................1811.001.00-------------1.00-------------------------------------------------------------------------------------
.....................GGCGCGTGGGTGAGGAAGGTC................................................................................................................................................................................................................2111.001.00------------------1.00--------------------------------------------------------------------------------
...............................................................TGACTTTGGGGGTCTGCAG........................................................................................................................................................................1911.001.00---------------------------------------1.00-----------------------------------------------------------
...............GACGAGGGCGCGTGGGT..........................................................................................................................................................................................................................1711.001.00---------------1.00-----------------------------------------------------------------------------------
................ACGAGGGCGCGTGGGTGAGGAAGGTCAGGTC...........................................................................................................................................................................................................3111.001.00----------1.00----------------------------------------------------------------------------------------
............CGGGACGAGGGCGCGTGGG...........................................................................................................................................................................................................................1911.001.00---------1.00-----------------------------------------------------------------------------------------
.........................CGTGGGTGAGGAAGGTCAGGTCTAGGTAAGGCTGT..............................................................................................................................................................................................3511.001.00-----------------------------------------------------------------------------------------------1.00---
....................GGGCGCGTGGGTGAGGAAGG..................................................................................................................................................................................................................2011.001.00-----------------------1.00---------------------------------------------------------------------------
...............................................TAGGTAAGGCTGTCGGTG.........................................................................................................................................................................................1811.001.00--1.00------------------------------------------------------------------------------------------------
...............................TGAGGAAGGTCAGGTCTAGGAACT...................................................................................................................................................................................................241.000.00---------1.00-----------------------------------------------------------------------------------------
....................................................................................................................................................................ACCAGCTCGGGCGGTTCACGTGCATC............................................................2611.001.00---------------------------------1.00-----------------------------------------------------------------
............................................GTCTAGGTAAGGCTGGCGG...........................................................................................................................................................................................191.000.001.00--------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGCCTCAGTTGGGGGCTCG..................191.000.00-----------------------------------------------------------------1.00---------------------------------
......................................GGTCAGGTCTAGGTAAGGCTG...............................................................................................................................................................................................2111.001.001.00--------------------------------------------------------------------------------------------------
..............................GTGAGGAAGGTCAGGTCTTGG.......................................................................................................................................................................................................2111.001.00-----------1.00---------------------------------------------------------------------------------------
...................................................................................................................................................................GACCAGCTCGGGCGGTTCA....................................................................1911.001.00-----------------------------1.00---------------------------------------------------------------------
................................GAGGAAGGTCAGGTCTAG........................................................................................................................................................................................................1811.001.00-------------------------------------------------1.00-------------------------------------------------
................................GAGGAAGGTCAGGTCTAGGAA.....................................................................................................................................................................................................211.000.00-------------------------------1.00-------------------------------------------------------------------
....................................................................TTGGGGGTCTGCAGCAAGG...................................................................................................................................................................1911.001.00------------------------------------------------------------------------------------1.00--------------
..........................................AGGTCTAGGTAAGGCTGTCGGTG.........................................................................................................................................................................................2311.001.00--1.00------------------------------------------------------------------------------------------------
.........TTCCGGGACGAGGGCGCGTGGGTGAGG......................................................................................................................................................................................................................2711.001.00-----------------------------------------------1.00---------------------------------------------------
.........................CGTGGGTGAGGAAGGG.................................................................................................................................................................................................................161.000.00-----------------------------------------------------------------------1.00---------------------------
.........................................CAGGTCTAGGTAAGGCTG...............................................................................................................................................................................................1811.001.00--------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................ACCAGCTCGGGCGGTTCACGGG................................................................221.000.00-----------1.00---------------------------------------------------------------------------------------
..................GAGGGCGCGTGGGTGGTG......................................................................................................................................................................................................................181.000.00------------------------------1.00--------------------------------------------------------------------
.................................................................ACTTTGGGGGTCTGCAGC.......................................................................................................................................................................1811.001.00------------------1.00--------------------------------------------------------------------------------
..................GAGGGCGCGTGGGTGGGG......................................................................................................................................................................................................................181.000.00------------------------------------------------------------------------1.00--------------------------
..................................................................................................................CTCCAACCTTGTAGAGTCGCCA..................................................................................................................2211.001.00--------1.00------------------------------------------------------------------------------------------
....................................AAGGTCAGGTCTAGGTA.....................................................................................................................................................................................................1711.001.00----1.00----------------------------------------------------------------------------------------------
..............................GTGAGGAAGGTCAGGT............................................................................................................................................................................................................1611.001.00------------1.00--------------------------------------------------------------------------------------
.......................................GTCAGGTCTAGGTAAGGCTGTC.............................................................................................................................................................................................2211.001.00-----------------1.00---------------------------------------------------------------------------------
..................................GGAAGGTCAGGTCTAGG.......................................................................................................................................................................................................1721.001.00--1.00------------------------------------------------------------------------------------------------
...........CCGGGACGAGGGCGCGT..............................................................................................................................................................................................................................1711.001.00--------1.00------------------------------------------------------------------------------------------
...........................................................................TCTGCAGCAAGGGGCGGCG............................................................................................................................................................191.000.00----------1.00----------------------------------------------------------------------------------------
............CGGGACGAGGGCGCGTGG............................................................................................................................................................................................................................1811.001.00--------------------------------------------------------1.00------------------------------------------
..............................................CTAGGTAAGGCTGTCGGTGA........................................................................................................................................................................................2011.001.00---------------------------1.00-----------------------------------------------------------------------
................................GAGGAAGGTCAGGTCTAGAA......................................................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------------------1.00-------
...................................GAAGGTCAGGTCTAGGTA.....................................................................................................................................................................................................1811.001.00-----------1.00---------------------------------------------------------------------------------------
...............GACGAGGGCGCGTGGGTGAGGAAGGTCAGGTCT..........................................................................................................................................................................................................3311.001.00----------1.00----------------------------------------------------------------------------------------
..............................GTGAGGAAGGTCAGGTCT..........................................................................................................................................................................................................1811.001.00--------------------1.00------------------------------------------------------------------------------
.....................................................................TGGGGGTCTGCAGCAAGGGGCGATGGCCGCG......................................................................................................................................................311.000.00-------------------1.00-------------------------------------------------------------------------------
.............GGGACGAGGGCGCGTGGAGA.........................................................................................................................................................................................................................201.000.00----------------------------------------------------------------1.00----------------------------------
.......................CGCGTGGGTGAGGAAGGTCAGGTCT..........................................................................................................................................................................................................2511.001.00------------------------------------------------1.00--------------------------------------------------
..................................................GTAAGGCTGTCGGTG.........................................................................................................................................................................................1511.001.00------------------------1.00--------------------------------------------------------------------------
................................................................GACTTTGGGGGTCTGCAGCACGG...................................................................................................................................................................231.000.00----------------1.00----------------------------------------------------------------------------------
........CTTCCGGGACGAGGGCGC................................................................................................................................................................................................................................1811.001.00----------------------------------------------------------------------------------------1.00----------
...........................TGGGTGAGGAAGGTCAGGTCTA.........................................................................................................................................................................................................2211.001.00---------------------------------------------------------------------------------------------1.00-----
...............GACGAGGGCGCGTGGGTGAGGAAGGTCAGG.............................................................................................................................................................................................................3011.001.00----------1.00----------------------------------------------------------------------------------------
............................GGGTGAGGAAGGTCAGGTCT..........................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------1.00---------------------
.............................................TCTAGGTAAGGCTGTCGGG..........................................................................................................................................................................................1911.002.001.00--------------------------------------------------------------------------------------------------
.......................................................................GGGGTCTGCAGCAAGGGGC................................................................................................................................................................1911.001.00--------------1.00------------------------------------------------------------------------------------
..............................................CTAGGTAAGGCTGTCGGTG.........................................................................................................................................................................................1911.001.00----------------------------------------------------------1.00----------------------------------------
..............................GTGAGGAAGGTCAGGTCTAGG.......................................................................................................................................................................................................2111.001.00----------------------------------------------------------------------------------------------1.00----
.....................................AGGTCAGGTCTAGGTA.....................................................................................................................................................................................................1611.001.00----1.00----------------------------------------------------------------------------------------------
.................................AGGAAGGTCAGGTCTAGGTAAG...................................................................................................................................................................................................2211.001.00--------------------------------------------------------------------------------------------1.00------
....................................................AAGGCTGTCGGTGACTTTGGGGGTCTGC..........................................................................................................................................................................2811.001.00-----------------1.00---------------------------------------------------------------------------------
.......................................................................GGGGTCTGCAGCAAGGGG.................................................................................................................................................................1821.001.00--0.50----------0.50-------------------------------------------------------------------------------------
..............................................CTAGGTAAGGCTGTCGGT..........................................................................................................................................................................................1811.001.00--------1.00------------------------------------------------------------------------------------------
.................CGAGGGCGCGTGGGTCGG.......................................................................................................................................................................................................................181.000.00---------------------------1.00-----------------------------------------------------------------------
...............................................................................CAGCAAGGGGCGATGGC..........................................................................................................................................................1711.001.00------------------------------------------------------------------------------1.00--------------------
...................AGGGCGCGTGGGTGAGGAAGGTCAGGTCC..........................................................................................................................................................................................................291.000.00-------------------1.00-------------------------------------------------------------------------------
.............................................TCTAGGTAAGGCTGTCGGTGG........................................................................................................................................................................................211.000.001.00--------------------------------------------------------------------------------------------------
...................................................................TTTGGGGGTCTGCAGCAAGGGG.................................................................................................................................................................2211.001.00--------1.00------------------------------------------------------------------------------------------
..........................................AGGTCTAGGTAAGGCTGGCGG...........................................................................................................................................................................................211.000.001.00--------------------------------------------------------------------------------------------------
...........................TGGGTGAGGAAGGTCAGGT............................................................................................................................................................................................................1911.001.00-------------------------------1.00-------------------------------------------------------------------
.........................CGTGGGTGAGGAAGGTCAGGT............................................................................................................................................................................................................2111.001.00--------1.00------------------------------------------------------------------------------------------
.......................................................................................................................................AGGAATAGGGCGAATCCA.................................................................................................1811.001.00---------------------------------------------------------1.00-----------------------------------------
............................................GTCTAGGTAAGGCTGTCGGGG.........................................................................................................................................................................................211.000.00-------1.00-------------------------------------------------------------------------------------------
.............................................TCTAGGTAAGGCTGTCGGT..........................................................................................................................................................................................1911.001.00----------------1.00----------------------------------------------------------------------------------
....................................AAGGTCAGGTCTAGGTAAGGC.................................................................................................................................................................................................2111.001.00---------------------------------------------------------------------------1.00-----------------------
..........................................AGGTCTAGGTAAGGC.................................................................................................................................................................................................1521.001.00----1.00----------------------------------------------------------------------------------------------
..........................................AGGTCTAGGTAAGGCTGTCGGTGA........................................................................................................................................................................................2411.001.00-1.00-------------------------------------------------------------------------------------------------
..............................GTGAGGAAGGTCAGGTCTAGGTACG...................................................................................................................................................................................................251.000.00------1.00--------------------------------------------------------------------------------------------
....................................AAGGTCAGGTCTAGGTAAGGCT................................................................................................................................................................................................2211.001.00-------1.00-------------------------------------------------------------------------------------------
........CTTCCGGGACGAGGGCGCGTGGGTGAGGAAGG..................................................................................................................................................................................................................3211.001.00-----------------------------------------------------------1.00---------------------------------------
..................................................GTAAGGCTGTCGGTGAC.......................................................................................................................................................................................1711.001.00---------------------------------------------------1.00-----------------------------------------------
...............GACGAGGGCGCGTGGGTG.........................................................................................................................................................................................................................1811.001.00-----------------------------------------------------1.00---------------------------------------------
...............................TGAGGAAGGTCAGGTCTAGGT......................................................................................................................................................................................................2111.001.00------------------------1.00--------------------------------------------------------------------------
...........................TGGGTGAGGAAGGTCAGGTC...........................................................................................................................................................................................................2011.001.00--------------------------------1.00------------------------------------------------------------------
...................AGGGCGCGTGGGTGAGGAAG...................................................................................................................................................................................................................2011.001.00-----------------------1.00---------------------------------------------------------------------------
...........................................................TCGGTGACTTTGGGGGT..............................................................................................................................................................................1711.001.00---1.00-----------------------------------------------------------------------------------------------
.................................AGGAAGGTCAGGTCTAG........................................................................................................................................................................................................1711.001.00---------------1.00-----------------------------------------------------------------------------------
...........................................................................................................................TGTAGAGTCGCCAGGGCCT............................................................................................................191.000.00-------------------1.00-------------------------------------------------------------------------------
...........CCGGGACGAGGGCGCGTGGGTGAGGAAGGTC................................................................................................................................................................................................................3111.001.00--------------------------------------------------------------1.00------------------------------------
........................GCGTGGGTGAGGAAGGTC................................................................................................................................................................................................................1811.001.00-1.00-------------------------------------------------------------------------------------------------
.......................................................................................................................ACCTTGTAGAGTCGCCAGGAAT.............................................................................................................2211.001.00--------------1.00------------------------------------------------------------------------------------
......................................................................................................................................................................CAGCTCGGGCGGTTCACGTGCATCACA.........................................................2711.001.00-------------------------------------------------------------------------------1.00-------------------
.......................................GTCAGGTCTAGGTAAGGCTGT..............................................................................................................................................................................................2111.001.00-------------------------------------------------------------------1.00-------------------------------
..................................GGAAGGTCAGGTCTAG........................................................................................................................................................................................................1630.670.67------------------------------------------------------------------------------------------------0.67--
....................................................AAGGCTGTCGGTGACTTT....................................................................................................................................................................................1820.500.50----------------0.50----------------------------------------------------------------------------------
.....................................................AGGCTGTCGGTGACTTTG...................................................................................................................................................................................1820.500.50-----------------------------------0.50---------------------------------------------------------------
..........................................................GTCGGTGACTTTGGG.................................................................................................................................................................................1520.500.50------------0.50--------------------------------------------------------------------------------------
................................GAGGAAGGTCAGGTCTA.........................................................................................................................................................................................................1720.500.50---------------0.50-----------------------------------------------------------------------------------
.....................................................AGGCTGTCGGTGACTTT....................................................................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------------0.50-
...............................TGAGGAAGGTCAGGTCTA.........................................................................................................................................................................................................1820.500.50--------------------------------------------------------------------------------------------------0.50
..............................GTGAGGAAGGTCAGG.............................................................................................................................................................................................................1570.140.14------------0.14--------------------------------------------------------------------------------------

Antisense strand
GGGCGGGCCTTCCGGGACGAGGGCGCGTGGGTGAGGAAGGTCAGGTCTAGGTAAGGCTGTCGGTGACTTTGGGGGTCTGCAGCAAGGGGCGATGGCTGCGAAGTCTACGGGGGTCTCCAACCTTGTAGAGTCGCCAGGAATAGGGCGAATCCACTTCATTAGTGACCAGCTCGGGCGGTTCACGTGCATCACACAAATAACTTGGCCTTTTTCTGCCTCAGTTGGGGGATTTCTTAAACGTAGAATACCC
.......................................................(((.(((..(((((((.((.((....((.....))...)))).)))))))..))).)))........................................................................................................................................
.......................................................56...............................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532889(GSM532889)
G576N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		GSM532880(GSM532880)
G659T. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR040023(GSM532908)
G575T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		GSM532890(GSM532890)
G576T. (cervix)		GSM339994(GSM339994)
hues6. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR040017(GSM532902)
G645T. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)
.................................................................................................................................................................................................................CCCCCAACTGAGGCAGAAA...................... 1911.001.00--------------------------------------------------------------------------------------1.00------------
...........................................................................................................TACAAGGTTGGAGACCCCCG........................................................................................................................... 2011.001.00----------------------------------------------------------------------1.00----------------------------
............CGCGCCCTCGTCCCG............................................................................................................................................................................................................................... 1511.001.00----------------------------1.00----------------------------------------------------------------------
..........................................................................................................................................................................ATGCACGTGAACCGCCCGA............................................................. 1911.001.00---------------------------------1.00-----------------------------------------------------------------
............................................................................................................................................................................................................ACTGAGGCAGAAAAAGGC............................ 1811.001.00--1.00------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................AAAAGGCCAAGTTATTTGTG....................................... 2011.001.00-----------1.00---------------------------------------------------------------------------------------
.............................................................................................................................................................................ATTTGTGTGATGCACGTGAACCGCC.................................................... 2511.001.00-----------------------------------------------------------------------------------------1.00---------
....................................AAGGTCAGGTCTAGGTCCG................................................................................................................................................................................................... 191.000.00--------------------------------------1.00------------------------------------------------------------