ID: uc003vqn.3_intron_0_0_chr7_130567496_r.5p
GENE: (3)
chr7:130568876-130569125-


(2)
AGO2.ip
(4)
BRAIN
(3)
BREAST
(18)
CELL-LINE
(1)
CERVIX
(1)
HEART
(3)
HELA
(3)
LIVER
(1)
OTHER
(2)
RRP40.ip
(5)
SKIN
(1)
TESTES

Sense strand
GGATTTCTGTGCCTGGAAAATATCTGTTAACAGACTGCTTTTACACCTACGTAAGTAGAGGCTTCTGCTTATAAGTCAACCTCAAGGGAGTTTTATTTTGTCCCTGGATGATTCCTCAGTACATTTTTCTTTTTCTTTTTTGAGGTAGGGTTTTGCTCTGTTGCCCAGGCTGGAGTACAGTGGTGTGATCACAACTCACTGCGGCCTCAACCTCCCAGGCTCAAGCGATCCTCCCACCTCAGCCTCCCAA
............................................................................................................................................((.(((((((.....))))...))))).((((.....)))).(((....)))..........................................................
.......................................................................................................................................136.......................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189786SRR189787SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR189785SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
SRR040025(GSM532910)
G613T. (cervix)
GSM359178(GSM359178)
hela_nucl_t. (hela)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
.........................................................................................................................................................................CTGGAGTACAGTGGTGTAGGG............................................................2115.000.00--15.00------------------------------------------
.....................................................................................................................................................................CAGGCTGGAGTACAGTGGTGTTAA.............................................................243.000.00-------3.00-------------------------------------
.............................................................................................................................................................CTGTTGCCCAGGCTGGAGTACTCTG....................................................................252.000.00-----2.00---------------------------------------
............................................................................................................................................TGAGGTAGGGTTTTGTGGT...........................................................................................192.000.00-----2.00---------------------------------------
............................AACAGACTGCTTTTACACCTACG.......................................................................................................................................................................................................2312.002.00--------2.00------------------------------------
........................................................................................................................ACATTTTTCTTTTTCTTTTTTGAGGTAGGG....................................................................................................3012.002.002.00--------------------------------------------
..........................................................................................................................ATTTTTCTTTTTCTTTTTTCAAG.........................................................................................................232.000.00------2.00--------------------------------------
................................................................................................................................................................TTGCCCAGGCTGGAGTACAGTGCAC.................................................................252.000.002.00--------------------------------------------
..............................................................................................................................................................................................................................AAGCGATCCTCCCACCTCAGCCTCCCATCCT312.000.002.00--------------------------------------------
.................................................................................................................................................................................................................ACCTCCCAGGCTCAAGCGATCCTCCCACTG...........302.000.002.00--------------------------------------------
...............................................................................................................TTCCTCAGTACATTTTTC.........................................................................................................................1811.001.00---------------------------------------1.00-----
.......................................................................................................................................................................................................................CAGGCTCAAGCGATCCTCCCGATT...........241.000.00--------------------------------1.00------------
.........................................................................................................................CATTTTTCTTTTTCTTTTTAATG..........................................................................................................231.000.00---------1.00-----------------------------------
..............................................................................................................................................................................................ACAACTCACTGCGGCCTCAACCCCGG..................................261.000.00-1.00-------------------------------------------
..................................................................................................................................................AGGGTTTTGCTCTGTTGC......................................................................................1801.001.00-----------------------------------1.00---------
......................................................................................................................................CTTTTTTGAGGTAGGGTTTTGCT.............................................................................................2311.001.00-----------------------------1.00---------------
.........................................................................................................................CATTTTTCTTTTTCTTTTTCTTG..........................................................................................................231.000.00-----------------------------------------1.00---
..............................................................................................................................TTCTTTTTCTTTTTTGAGGAAGT.....................................................................................................231.000.00-1.00-------------------------------------------
......................................................................................................................................................................AGGCTGGAGTACAGTGGTGTGATGCG..........................................................261.000.00-1.00-------------------------------------------
............................................................................................................................................TGAGGTAGGGTTTTGTATA...........................................................................................191.000.00----------1.00----------------------------------
..............................................................................................................................................................................................................TCAACCTCCCAGGCTCAAGCTATA....................241.000.00--------1.00------------------------------------
..................................................................................................................................................AGGGTTTTGCTCTGTTGCCCAGGAG...............................................................................251.000.001.00--------------------------------------------
.....................................................................................GGGAGTTTTATTTTGTTGG..................................................................................................................................................191.000.00------------------------------------1.00--------
............................................................................................................................................TGAGGTAGGGTTTTGCATAG..........................................................................................201.000.00------------------------------1.00--------------
............................................................................................................................................TGAGGTAGGGTTTTGCG.............................................................................................171.000.00-------------------------1.00-------------------
...............................................................................................................................................................................................................................AGCGATCCTCCCACCTCAGCGCCC...241.000.00-1.00-------------------------------------------
....................................................................................................................CAGTACATTTTTCTTTTTG...................................................................................................................191.000.00---------1.00-----------------------------------
................................................................................................................................................................TTGCCCAGGCTGGAGTACAGTGCGTG................................................................261.000.001.00--------------------------------------------
...............................................................................................................................................................................TACAGTGGTGTGATCACTGAA......................................................211.000.00------------1.00--------------------------------
.........................GTTAACAGACTGCTTTTACACCTA.........................................................................................................................................................................................................2411.001.00---------------1.00-----------------------------
.....................ATCTGTTAACAGACTGCTTTTACACC...........................................................................................................................................................................................................2611.001.00----------------------------1.00----------------
.............................ACAGACTGCTTTTACACCTAC........................................................................................................................................................................................................2111.001.00--------------1.00------------------------------
.........................................................................................................................CATTTTTCTTTTTCTTTTAAG............................................................................................................211.000.00------1.00--------------------------------------
........................................................................................................................ACATTTTTCTTTTTCGGGC...............................................................................................................191.000.001.00--------------------------------------------
........................TGTTAACAGACTGCTTTTACACCT..........................................................................................................................................................................................................2411.001.00------------------------1.00--------------------
...................................................................................................................................TTTCTTTTTTGAGGTAGGGTTCCCC..............................................................................................251.000.001.00--------------------------------------------
.................................................................................................................................................................TGCCCAGGCTGGAGTACAGGCG...................................................................221.000.001.00--------------------------------------------
...............................................................................................................................................................................TACAGTGGTGTGATCACTGA.......................................................201.000.00----------1.00----------------------------------
............................................................................................................................TTTTCTTTTTCTTTTTTGAGCCGG......................................................................................................241.000.00-1.00-------------------------------------------
........................................................................................................................ACATTTTTCTTTTTCTTTTTCTTG..........................................................................................................241.000.00------1.00--------------------------------------
........................................................................................................................ACATTTTTCTTTTTCTTTTTTATG..........................................................................................................241.000.00---------1.00-----------------------------------
......................................................................................................................GTACATTTTTCTTTTTCTATAA..............................................................................................................221.000.00-------------1.00-------------------------------
................................................................................................................................................................TTGCCCAGGCTGGAGTACAGTGGTTTTC..............................................................281.000.001.00--------------------------------------------
.............................................................................................................................................................CTGTTGCCCAGGCTGGAGTACAGTGGTGTAGGG............................................................331.000.00--1.00------------------------------------------
.....................................................................................................................................................................CAGGCTGGAGTACAGTGGTTTC...............................................................221.000.00---1.00-----------------------------------------
...............................................................................................................................................................................................................................AGCGATCCTCCCACCTCAGCCTCCGCAG281.000.00-1.00-------------------------------------------
..............................................................................................................................................................TGTTGCCCAGGCTGGAGTACAGTGCGTG................................................................281.000.001.00--------------------------------------------
..................................................................................................................................TTTTCTTTTTTGAGGTAGTTG...................................................................................................211.000.00-1.00-------------------------------------------
.....................................................................................................................................................................CAGGCTGGAGTACAGTGGTGTAGGG............................................................251.000.00--1.00------------------------------------------
........................................................................................................................ACATTTTTCTTTTTCTTTTTCCTT..........................................................................................................241.000.00------1.00--------------------------------------
.......................................................................................................................................................................................................................CAGGCTCAAGCGATCCTCCCGCAA...........241.000.00--------------------------1.00------------------
................................................................................................................................................................TTGCCCAGGCTGGAGTACAGTGCGT.................................................................251.000.001.00--------------------------------------------
...............................................................................................................................TCTTTTTCTTTTTTGAGGTAGAG....................................................................................................231.000.00-1.00-------------------------------------------
...........................................................................................................................................................................GGAGTACAGTGGTGTAGGG............................................................191.000.00--1.00------------------------------------------
............................................................................................................................................TGAGGTAGGGTTTTGTA.............................................................................................171.000.00---------------------1.00-----------------------
.......................................................................................................................................................................................................................CAGGCTCAAGCGATCCTCCCGTAA...........241.000.00------------1.00--------------------------------
.................................................................TGCTTATAAGTCAACCTCAAGGGAGT...............................................................................................................................................................2611.001.00----------------------------------1.00----------
...........................................................................................................................TTTTTCTTTTTCTTTTTTGAGGTAG......................................................................................................2511.001.00-------------1.00-------------------------------
............................................................................................................................................................TCTGTTGCCCAGGCTGGAGTACTCTG....................................................................261.000.00------------------1.00--------------------------
......................................................................................................................................................TTTTGCTCTGTTGCCCAGGCTGGCGC..........................................................................261.000.001.00--------------------------------------------
............................AACAGACTGCTTTTACAC............................................................................................................................................................................................................1820.500.50--------------0.50------------------------------
.................................................................................................................................................................................................ACTCACTGCGGCCTCAACCTCCCAGGCTC............................2940.250.250.25--------------------------------------------
.........................................................................................................................CATTTTTCTTTTTCTTTTTTG............................................................................................................2170.140.14--------------------------------------------0.14
.................................................................................................................................................................................................ACTCACTGCGGCCTCAACCTC....................................2180.120.12---------------0.12-----------------------------

Antisense strand
GGATTTCTGTGCCTGGAAAATATCTGTTAACAGACTGCTTTTACACCTACGTAAGTAGAGGCTTCTGCTTATAAGTCAACCTCAAGGGAGTTTTATTTTGTCCCTGGATGATTCCTCAGTACATTTTTCTTTTTCTTTTTTGAGGTAGGGTTTTGCTCTGTTGCCCAGGCTGGAGTACAGTGGTGTGATCACAACTCACTGCGGCCTCAACCTCCCAGGCTCAAGCGATCCTCCCACCTCAGCCTCCCAA
............................................................................................................................................((.(((((((.....))))...))))).((((.....)))).(((....)))..........................................................
.......................................................................................................................................136.......................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189786SRR189787SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR189785SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)
SRR040025(GSM532910)
G613T. (cervix)
GSM359178(GSM359178)
hela_nucl_t. (hela)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
...................................................................................................................................................................................................TCACTGCGGCCTCAACCTCCCAT................................ 234.000.00---4.00-----------------------------------------
......................................................................................................................................................................................................CTGCGGCCTCAACCTCCCAGGCTCA........................... 252.000.002.00--------------------------------------------
................................................................................................................................................................................................................AACCTCCCAGGCTCAAGCGATT.................... 222.000.00-----------2.00---------------------------------
..................................................................................................................................................................................................CTCACTGCGGCCTCAACCTCCCAGGCTCAAC......................... 312.000.002.00--------------------------------------------
.................................................................................................................................................................................................................................CGATCCTCCCACCTCAGCCTCCCAAGG 271.000.00-1.00-------------------------------------------
...................................................................................................................................................................................................TCACTGCGGCCTCAACCTCCCAGGCTCAACCG....................... 321.000.00-1.00-------------------------------------------
.................................................................................................................................................................................................TGGGAGGTTGAGGCCGCAGTGAGT................................. 2441.001.00---0.250.75----------------------------------------
......................................................................................................................................................................................................CTGCGGCCTCAACCTCCCAG................................ 201.000.00----1.00----------------------------------------
.....................................................................................................................................................................................................................CCCAGGCTCAAGCGATCCGT................. 201.000.00-1.00-------------------------------------------
............................................................................................................................................................................................................................TCAAGCGATCCTCCCACCTCAGTTT..... 251.000.00--------------------1.00------------------------
.................................................................................................................................................................................................ACTCACTGCGGCCTCAACCTCATG................................. 241.000.001.00--------------------------------------------
..........................................................................................................................................................GCTCTGTTGCCCAGGCTGGAGTACG....................................................................... 251.000.001.00--------------------------------------------
........................................................................................................................................TTTTTGAGGTAGGGTCAAG............................................................................................... 191.000.00-------------------------------1.00-------------
....................................................................................................................................................................................................................TCCCAGGCTCAAGCGATCCTCCCACCTCGGC....... 311.000.00-1.00-------------------------------------------
.........................................................................................................................................................................................................CGGCCTCAACCTCCCAGGCTCAAGCGATTGG.................. 311.000.001.00--------------------------------------------
.........................................................................................................................................................TGCTCTGTTGCCCAGGCTGGAGTACACGCA................................................................... 301.000.00-1.00-------------------------------------------
........................................................................................................................................................................................................................AGGTGGGAGGATCGCTTGAGCCT........... 2301.001.00-------------------------------------1.00-------
............................................................................................................................................................................................................................TCAAGCGATCCTCCCACCGG.......... 201.000.00----------------------1.00----------------------
.........................................................................................................................................................................................................CGGCCTCAACCTCCCAGGAG............................. 201.000.00-1.00-------------------------------------------
.................................................................................................................................................................................................ACTCACTGCGGCCTCAACCTG.................................... 211.000.001.00--------------------------------------------
......................................................................................................................................................................................................CTGCGGCCTCAACCTCCCAGGCTCACG......................... 271.000.001.00--------------------------------------------
.......................................................................................................................................................................GGCTGGAGTACAGTGGTGTGATCAGGGC....................................................... 281.000.001.00--------------------------------------------
..................................................................................................................................................................................................CTCACTGCGGCCTCAACCTCCCAGGCTCAACA........................ 321.000.00-1.00-------------------------------------------
.........................................................................................................................................................................................................CGGCCTCAACCTCCCAGGCTCATGG........................ 251.000.00-1.00-------------------------------------------
.............................TACTTACGTAGGTGTAAAAGCAGTCTGT................................................................................................................................................................................................. 2811.001.00--------------------------------------1.00------
.........................................................................................................................................................................................................CGGCCTCAACCTCCCAGGCTCAGGG........................ 251.000.00-1.00-------------------------------------------
..................................................................................................................................................................................................CTCACTGCGGCCTCAACCTCCCAGGCTCCGG......................... 311.000.001.00--------------------------------------------
....................................................................................................................................................................................................CACTGCGGCCTCAACCTCCCAGGCTTGCC......................... 291.000.001.00--------------------------------------------
..................................................................................................................................................................................................CTCACTGCGGCCTCAACCTCCCAAT............................... 251.000.00---1.00-----------------------------------------
...................................................................................................................................................................................................TCACTGCGGCCTCAATTTC.................................... 191.000.00-1.00-------------------------------------------
......................................................................................................................................................................................................CTGCGGCCTCAACCTCCCAGGAG............................. 231.000.00----1.00----------------------------------------
............................................................................................................................................................................................................................TCAAGCGATCCTCCCACCTC.......... 201.000.00------------------------------------------1.00--
.........................................................................................................................................TTTTGAGGTAGGGTTTTTATG............................................................................................ 211.000.00-----------------1.00---------------------------
............................................................................................................................................................................................................TTGAGCCTGGGAGGTTGAGG.......................... 2001.001.00-----------------------1.00---------------------
.......................................................................................................................................................................................................................CAGGCTCAAGCGATCCTCTAG.............. 211.000.00----------------1.00----------------------------
......................................................................................................................................................................................................CTGCGGCCTCAACCTCCCACGA.............................. 221.000.00----1.00----------------------------------------
.....................................................................................................................................................GTTTTGCTCTGTTGCCCAGGCTGGATCC......................................................................... 281.000.00-----1.00---------------------------------------
..............................................................................................................................................................TGTTGCCCAGGCTGGAGTACAGTGGTCCTT.............................................................. 301.000.00----------------------------------------1.00----
.....................................................................................................................................................................................................................GTGGGAGGATCGCTTGAGCCTGGG............. 2401.001.00-------------------1.00-------------------------
.................................................................................................................................................................................................................GGAGGATCGCTTGAGCCTGGGAGGT................ 2501.001.00---------------------------1.00-----------------
.......................................................................................................................................................................................................TGCGGCCTCAACCTCCCACTGA............................. 221.000.00----1.00----------------------------------------
................................................................................................................................................................................................................AACCTCCCAGGCTCAAGTAGC..................... 211.000.00---------------------------------1.00-----------
.......................................................................................................................................................................GGCTGGAGTACAGTGGTGTGATGAG.......................................................... 251.000.00-1.00-------------------------------------------
.................................................................................................................................................................................................ACTCACTGCGGCCTCAACCTCCCAAT............................... 260.500.00-------------------------------------------0.50-
.................................................................................................................................................................................................CTGGGAGGTTGAGGCCGCAGTGAGT................................ 2540.250.25----0.25----------------------------------------