| (3) B-CELL | (1) BRAIN | (9) CELL-LINE | (1) HEART | (1) HELA | (1) OTHER | (1) RRP40.ip | (4) SKIN | (1) XRN.ip |
| ATTGATTAGTTCATACTACAATGTGACATACTGGCCCCTCTGGTATATTGGTAAGTAAGTAATTTTCACTGTAACTTACATTTACCAATAAAAAACTGCCTTCAGGTTTAATTCAGCTTAGTATACATTTCCTTATTCAACAAGTATTTGACTGCCTGCTGGGTTGTAAAAACTGGGAATACAGCAGAAAGGGAGCAAGGTAAATCCCTGCTATTATGAAAGGAACATTCTGTTAGACAATCAGATTAAT ........................................................................................................(((((....((((((((((..((.((...((((.....))))...)).))..))))))))))...)))))............................................................................ .......................................................................................................104....................................................................................191......................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR343335 | SRR343334 | SRR343337 | SRR343336 | SRR189782 | SRR207116(GSM721078) Nuclear RNA. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR189784 | SRR037937(GSM510475) 293cand2. (cell line) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR037936(GSM510474) 293cand1. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR189787 | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR444057(SRX128905) Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin) | SRR189786 | SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR060983(GSM569187) Human pre-germinal center B cell [09-001]. (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR330922(SRX091760) tissue: normal skindisease state: normal. (skin) | SRR444070(SRX128918) Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................TAATTCAGCTTAGTACGAG........................................................................................................................... | 19 | 33.00 | 0.00 | 9.00 | 9.00 | 9.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................TAATTCAGCTTAGTACG............................................................................................................................. | 17 | 17.00 | 0.00 | 6.00 | 4.00 | 2.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................AAAAACTGGGAATACATTTG............................................................... | 20 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................ATGTGACATACTGGCCCCTCTGGTATATTGAG...................................................................................................................................................................................................... | 32 | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........TTCATACTACAATGTGACACTG........................................................................................................................................................................................................................... | 22 | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................ACTGGCCCCTCTGGTGAAC.......................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................AAACTGGGAATACAGGGTG.............................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....ATTAGTTCATACTACAAGGAC................................................................................................................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .TTGATTAGTTCATACTACAA..................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................AAAAACTGGGAATACTTTT................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................CTGCTATTATGAAAGGGTAT....................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................TGACATACTGGCCCCTCTGG............................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................ACATACTGGCCCCTCTTCCT............................................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...................................................TAAGTAAGTAATTTTTACG.................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................AATGTGACATACTGGCCCCT................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................GCTGGGTTGTAAAAAAAAA.......................................................................... | 19 | 6 | 0.83 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | 0.17 | 0.17 | - | - | - | - |
| .............................................................................................................................................................GCTGGGTTGTAAAAA.............................................................................. | 15 | 6 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 | - | - | 0.17 | 0.17 | - | - |
| ..........................CATACTGGCCCCTCTGGTA............................................................................................................................................................................................................. | 19 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................ATACTGGCCCCTCTGGTA............................................................................................................................................................................................................. | 18 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - |
| ................................................................................................................................................TATTTGACTGCCTGC........................................................................................... | 15 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - |
| ATTGATTAGTTCATACTACAATGTGACATACTGGCCCCTCTGGTATATTGGTAAGTAAGTAATTTTCACTGTAACTTACATTTACCAATAAAAAACTGCCTTCAGGTTTAATTCAGCTTAGTATACATTTCCTTATTCAACAAGTATTTGACTGCCTGCTGGGTTGTAAAAACTGGGAATACAGCAGAAAGGGAGCAAGGTAAATCCCTGCTATTATGAAAGGAACATTCTGTTAGACAATCAGATTAAT ........................................................................................................(((((....((((((((((..((.((...((((.....))))...)).))..))))))))))...)))))............................................................................ .......................................................................................................104....................................................................................191......................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR343335 | SRR343334 | SRR343337 | SRR343336 | SRR189782 | SRR207116(GSM721078) Nuclear RNA. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR189784 | SRR037937(GSM510475) 293cand2. (cell line) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR037936(GSM510474) 293cand1. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR189787 | SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell) | SRR444057(SRX128905) Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin) | SRR189786 | SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR060983(GSM569187) Human pre-germinal center B cell [09-001]. (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line) | SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR330922(SRX091760) tissue: normal skindisease state: normal. (skin) | SRR444070(SRX128918) Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........GTCACATTGTAGTATGAAC............................................................................................................................................................................................................................... | 19 | 1 | 3.00 | 3.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................TGTAAAAACTGGGAACCA.................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................TTGTAAAAACTGGGATGGT.................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................GATTGTCTAACAGAATGT........ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................AGTAAGTAATTTTCACTGTCATA.............................................................................................................................................................................. | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................TTGGTAAGTAAGTAATTTTGAGG.................................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......TTGTAGTATGAACTA..................................................................................................................................................................................................................................... | 15 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 |