ID: uc003vpi.2_intron_8_0_chr7_129688985_r.5p
GENE: (1)
chr7:129690861-129691110-


(9)
B-CELL
(4)
BRAIN
(3)
BREAST
(12)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(4)
LIVER
(1)
OTHER
(7)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CGGCAGCTGATAGATGAGGGGATTGCCCCGGAAGAGGGAGGCGTGGACGCGTGAGTTCACGAGTTAACCCTGGGTCCGGCGTTGGAAGATTGAAGAAGGCTTGGGGAAGGGGTGGCGGGTTGGGGGAGGTTCCCCTCGGTCGGCGACTCGGGCAGTGGGGATGGCTTCTTAGAATCTGAAAGAAACTCTGGTTACTATGTTTGATCGGCTTTGATCTTCCCCTCGGGGTGTACCAGATTCCCAACCGCAG
..........................................................................(((.((.........((.(((....))).))....((((.((.((..(((((......)))))..)).)).)))).....)).)))..........................................................................................
........................................................................73..............................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189782SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
.............................................................................GGCGTTGGAAGATTGAG............................................................................................................................................................179.000.009.00--------------------------------------------------
....................................................................................................................................................CGGGCAGTGGGGATGGC.....................................................................................1719.009.00-8.00------------------1.00------------------------------
.............................................................................GGCGTTGGAAGATTGAGAG..........................................................................................................................................................197.000.005.00------------------------1.00---1.00---------------------
...........................................................................................................................................................................GAATCTGAAAGAAACTCTGG...........................................................2014.004.00--4.00------------------------------------------------
..............................................................................................................................................GCGACTCGGGCAGTGGGGATGG......................................................................................2213.003.00----3.00----------------------------------------------
.............................................................................GGCGTTGGAAGATTGAGA...........................................................................................................................................................183.000.002.00-------------------------------------------1.00------
..................................AGGGAGGCGTGGACGCGTGA....................................................................................................................................................................................................2012.002.00---------------1.00---------------1.00-------------------
................................................................TAACCCTGGGTCCGGCGTTGGAAGACT...............................................................................................................................................................272.000.00---2.00-----------------------------------------------
.............................................................................GGCGTTGGAAGATTGAGAGG.........................................................................................................................................................202.000.001.00---------------------------1.00----------------------
.......................TGCCCCGGAAGAGGGAGGCGTGG............................................................................................................................................................................................................2312.002.00-------2.00-------------------------------------------
..........................................................................................................................................................GTGGGGATGGCTTCTTAGAATCTG........................................................................2412.002.00-----------2.00---------------------------------------
..................................................................................................................GCGGGTTGGGGGAGGCTCT.....................................................................................................................192.000.00-----2.00---------------------------------------------
..............................................................................................................................................................GGATGGCTTCTTAGAATCT.........................................................................1911.001.00----------1.00----------------------------------------
..........................CCCGGAAGAGGGAGGCGTGGACG.........................................................................................................................................................................................................2311.001.00----------------------------------------1.00----------
............................................................................................................................................................................AATCTGAAAGAAACTCTGGT..........................................................2011.001.00--1.00------------------------------------------------
.............................................................................GGCGTTGGAAGATTGAAGAATTG......................................................................................................................................................231.000.00---------------------------------------1.00-----------
......................................................................................................................................................................................................................................TACCAGATTCCCAACGCTA.191.000.00----------------1.00----------------------------------
...........................................................................................................AGGGGTGGCGGGTTGTGT.............................................................................................................................181.000.00------------------------------1.00--------------------
....AGCTGATAGATGAGGGGA....................................................................................................................................................................................................................................1811.001.00---------1.00-----------------------------------------
...........................................................................................................AGGGGTGGCGGGTTGCGC.............................................................................................................................181.000.00-----------------------1.00---------------------------
...............................................................................CGTTGGAAGATTGAATGTG........................................................................................................................................................191.000.00-------------------1.00-------------------------------
........................GCCCCGGAAGAGGGAGGCGTGGACG.........................................................................................................................................................................................................2511.001.00--------------------------------------1.00------------
................................................................................................AGGCTTGGGGAAGGGCGG........................................................................................................................................181.000.00---------------------1.00-----------------------------
..................................................................ACCCTGGGTCCGGCGTTGGAAGATC...............................................................................................................................................................251.000.00---1.00-----------------------------------------------
...........................................................................................................AGGGGTGGCGGGTTGGGT.............................................................................................................................181.000.00-------------------------------------1.00-------------
.................................................................................................................GGCGGGTTGGGGGAGTTT.......................................................................................................................181.000.00----------------------1.00----------------------------
..............................................................................GCGTTGGAAGATTGAGAG..........................................................................................................................................................181.000.001.00--------------------------------------------------
..............................................................................GCGTTGGAAGATTGAAGG..........................................................................................................................................................181.000.00------------1.00--------------------------------------
............................CGGAAGAGGGAGGCGTGG............................................................................................................................................................................................................1811.001.00-----------------1.00---------------------------------
..........TAGATGAGGGGATTGCCCCGGAAGA.......................................................................................................................................................................................................................2511.001.00----------------------------------1.00----------------
................................................................TAACCCTGGGTCCGGCGTTGGAAGACTG..............................................................................................................................................................281.000.00--------1.00------------------------------------------
...............................................................................................................................................................GATGGCTTCTTAGAATCTGAAAGAAACTCTG............................................................3111.001.00-------------1.00-------------------------------------
..............................................................................GCGTTGGAAGATTGAGGAG.........................................................................................................................................................191.000.00-------------------------------------------1.00-------
...................................................................................GGAAGATTGAAGAAGGCTT....................................................................................................................................................1911.001.00----1.00----------------------------------------------
...............................................................TTAACCCTGGGTCCGGCGTTGGAAGACTG..............................................................................................................................................................291.000.00--------1.00------------------------------------------
..................................................................................TGGAAGATTGAAGAAGGGAG....................................................................................................................................................201.000.00------------------------------------1.00--------------
...........................................................................................................AGGGGTGGCGGGTTGCG..............................................................................................................................171.000.00---------------------------------1.00-----------------
.............................GGAAGAGGGAGGCGTGGAC..........................................................................................................................................................................................................1911.001.00-----------------------------------------1.00---------
....................................................................................GAAGATTGAAGAAGGCTTG...................................................................................................................................................1911.001.00-----------------------------------1.00---------------
..........................CCCGGAAGAGGGAGGCGTGG............................................................................................................................................................................................................2011.001.00------------------------1.00--------------------------
............................................................................CGGCGTTGGAAGATTGA.............................................................................................................................................................1711.001.001.00--------------------------------------------------
.............................................................................GGCGTTGGAAGATTGAGTGG.........................................................................................................................................................201.000.001.00--------------------------------------------------
..GCAGCTGATAGATGAGAAAC....................................................................................................................................................................................................................................201.000.00--------------------------1.00------------------------
................................................................................................................................................GACTCGGGCAGTGGGGATGGCTTC..................................................................................2411.001.00------------------1.00--------------------------------
.................................................................................................................................................ACTCGGGCAGTGGGGATGGCTTCTT................................................................................2511.001.00--------------------------------1.00------------------
...............................................................TTAACCCTGGGTCCGGCGTTGGAAGATCG..............................................................................................................................................................291.000.00---1.00-----------------------------------------------
...........................................................................................................AGGGGTGGCGGGTTGGTGGC...........................................................................................................................201.000.00------------------------------------------1.00--------
..........................................................................................................AAGGGGTGGCGGGTTTTT..............................................................................................................................181.000.00------1.00--------------------------------------------
..................................AGGGAGGCGTGGACGACGG.....................................................................................................................................................................................................191.000.00----------1.00----------------------------------------
..................................................................................................................GCGGGTTGGGGGAGGTTCTCC...................................................................................................................211.000.00-----1.00---------------------------------------------
....AGCTGATAGATGAGGGGATT..................................................................................................................................................................................................................................2011.001.00---------1.00-----------------------------------------
..................................................................................TGGAAGATTGAAGAAGGC......................................................................................................................................................1820.500.50---------------------------------------------0.50-----
............................................................................................................................................CGGCGACTCGGGCAG...............................................................................................1520.500.50----------------------------------------------0.50----
.................................................................................TTGGAAGATTGAAGAAGG.......................................................................................................................................................1820.500.50-----------------------------------------------0.50---
...........................................................................................GAAGAAGGCTTGGGGA...............................................................................................................................................1660.170.17------------------------------------------------0.17--
.............................................................................................................GGGTGGCGGGTTGGG..............................................................................................................................1570.140.14-------------------------------------------------0.14-
................................AGAGGGAGGCGTGGA...........................................................................................................................................................................................................1580.120.12--------------------------------------------------0.12

Antisense strand
CGGCAGCTGATAGATGAGGGGATTGCCCCGGAAGAGGGAGGCGTGGACGCGTGAGTTCACGAGTTAACCCTGGGTCCGGCGTTGGAAGATTGAAGAAGGCTTGGGGAAGGGGTGGCGGGTTGGGGGAGGTTCCCCTCGGTCGGCGACTCGGGCAGTGGGGATGGCTTCTTAGAATCTGAAAGAAACTCTGGTTACTATGTTTGATCGGCTTTGATCTTCCCCTCGGGGTGTACCAGATTCCCAACCGCAG
..........................................................................(((.((.........((.(((....))).))....((((.((.((..(((((......)))))..)).)).)))).....)).)))..........................................................................................
........................................................................73..............................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR029124(GSM416753)
HeLa. (hela)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189782SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
...............................................................TTAACCCTGGGTCCGGGCT........................................................................................................................................................................ 191.000.00---------------------------1.00-----------------------
................................................................................................................................................................................................................CTTTGATCTTCCCCTAACT....................... 191.000.00------1.00--------------------------------------------
..............................................................................................GAAGGCTTGGGGAAGGGAAAG....................................................................................................................................... 211.000.00--------------1.00------------------------------------