ID: uc003vpf.1_intron_5_0_chr7_129520812_r.3p
GENE: (1)
chr7:129520762-129521011-


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(15)
BREAST 		(21)
CELL-LINE 		(3)
HEART 		(1)
HELA 		(7)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
XRN.ip

Sense strand
GTCTCTGAATCCAAAGCTCATGCATATCTTCTTACAAGAGTATATATTGCCTCCTCCTAAACTACCAGAATTATTATGTATATTTTATCAATGTCATGCCAAATTTTGGTAACACTTTAAGTGGCATATGCCTGGGGTGTTATTGGTAATTCTGCCAGATACTGTAAAGCCTGTGTAATTTCCTTTACCGTCCACCTTAGCATCGAGAGTAAACATGAGGTTACGATCCTGGGAGGACTTAATGAATTTG
..........................................................................................................((((((......((((.(((((.((.((.((((((..(((((....))))))))))).))..)).))))).))))...))))))............................................................
.....................................................................................................102...............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191514(GSM715624)
165genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR038858(GSM458541)
MEL202. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................................................................................................TTCCTTTACCGTCCACCTTAGA.................................................22135.005.002.00--4.00-----2.001.002.002.002.00-1.002.00-1.00----1.001.00---1.00--1.00-1.001.00-------1.001.00-1.00--1.00--1.00-1.001.00-1.00--1.00-1.00----
...................................................................................................................................................................................TTCCTTTACCGTCCACCTTAGAA................................................2315.005.00--4.00-------1.00-------------------------------------------------------
...................................................................................................................................................................................TTCCTTTACCGTCCACCTTAG..................................................2115.005.00--------------------------1.00-------------------1.00-----1.00----1.00----1.00---
....................................................................................................................................................................................................................ACATGAGGTTACGATCCTGGGAGGAC............2614.004.00----1.003.00------------------------------------------------------------
.........................................................................................................................................................................................................................AGGTTACGATCCTGGGAGGACTTAA........2513.003.00------3.00-----------------------------------------------------------
..........................................................................................................TGGTAACACTTTAAGTGGCATA..........................................................................................................................2213.003.00-3.00----------------------------------------------------------------
..................................................................................................................................................................................TTTCCTTTACCGTCCACCTTAG..................................................2213.003.00-------------------1.00-----1.00-------------1.00--------------------------
..................................................................................................................................................................................TTTCCTTTACCGTCCACCTTAGA.................................................2313.003.001.00-------------1.001.00--------------------------------------------------
...................................................................................................................................................................................TTCCTTTACCGTCCACCTTA...................................................2012.002.00-------------------------------------------------1.00--------1.00-------
...............................................................................................................................................................TACTGTAAAGCCTGTGTAATTTCCTTTACCGTCCA........................................................3512.002.00---------------------------1.00-----------------------------------1.00--
.......................................................................................................................................................................................................................TGAGGTTACGATCCTGGGAGG..............2112.002.00--------------------1.00-1.00-------------------------------------------
.........................................................................................................................................................................................................................AGGTTACGATCCTGGGAGGACT...........2212.002.00--------2.00---------------------------------------------------------
.................................................................................................................................................................................ATTTCCTTTACCGTCCACCTTAGA.................................................242.000.001.00---------------------------------------------------------------1.00-
..................................................................................................................................................................................TTTCCTTTACCGTCCACC......................................................1811.001.00--------------------------------1.00---------------------------------
...................................................................................................................................................................................TTCCTTTACCGTCCACCTTAGTA................................................2311.005.00--------------1.00---------------------------------------------------
................................................................................................................................................................................................................GTAAACATGAGGTTACGATCCTGGGAG...............2711.001.00------------------------------------1.00-----------------------------
........................................................................................................................................................................................................................GAGGTTACGATCCTGGGA................1811.001.00----1.00-------------------------------------------------------------
..................................................................................................................................................................................................................AAACATGAGGTTACGATCCTGGGAGGACTCA.........311.000.00-----------------------------------------------1.00------------------
.......................................................................................................................................................................................................................TGAGGTTACGATCCTGGGAGGACTTAATG......2911.001.00-------1.00----------------------------------------------------------
..................................................................................................................................................................................................................AAACATGAGGTTACGATCCT....................2011.001.00----1.00-------------------------------------------------------------
...................................................................................................................................................................................TTCCTTTACCGTCCACCTTAGCAT...............................................2411.001.00-1.00----------------------------------------------------------------
......................................................................................................................................................................................................................ATGAGGTTACGATCCTGGGAGGAC............2411.001.00------------------------------1.00-----------------------------------
......................................................................................................................................................................................................................ATGAGGTTACGATCCTGGGAGGACTT..........2611.001.00-------1.00----------------------------------------------------------
.............................................................................................................................................................................................................................TACGATCCTGGGAGGACT...........1811.001.00-----------------------------1.00------------------------------------
....................................................................................................................................TGGGGTGTTATTGGTAGA....................................................................................................181.000.00-------------------------------------1.00----------------------------
............................................................................................................................................................................................................................TTACGATCCTGGGAGATGT...........191.000.00-----------------------------------1.00------------------------------
.........................................................................................................................................................................................................................AGGTTACGATCCTGGGAGGACGCA.........241.000.00------------------------------------------------------------1.00-----
..........................................................................................................................................................................................................................GGTTACGATCCTGGGAGGA.............1911.001.00-----------------1.00------------------------------------------------
...............................................................................................................................................TGGTAATTCTGCCAGTAG.........................................................................................181.000.00---------------------1.00--------------------------------------------
.......................................................CCTAAACTACCAGAACA..................................................................................................................................................................................171.000.00----------------------------------------1.00-------------------------
...................................................................................................................................................................................TTCCTTTACCGTCCACCTTAGT.................................................2211.005.001.00-----------------------------------------------------------------
...................................................................................................................................................................................................................................CCTGGGAGGACTTAATG......1720.500.50-----------------------------------------------------------------0.50
........................................................................................................................................................................................................................................GAGGACTTAATGAATT..1650.200.20-------0.20----------------------------------------------------------

Antisense strand
GTCTCTGAATCCAAAGCTCATGCATATCTTCTTACAAGAGTATATATTGCCTCCTCCTAAACTACCAGAATTATTATGTATATTTTATCAATGTCATGCCAAATTTTGGTAACACTTTAAGTGGCATATGCCTGGGGTGTTATTGGTAATTCTGCCAGATACTGTAAAGCCTGTGTAATTTCCTTTACCGTCCACCTTAGCATCGAGAGTAAACATGAGGTTACGATCCTGGGAGGACTTAATGAATTTG
..........................................................................................................((((((......((((.(((((.((.((.((((((..(((((....))))))))))).))..)).))))).))))...))))))............................................................
.....................................................................................................102...............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191514(GSM715624)
165genomic small RNA (size selected RNA from . (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR038858(GSM458541)
MEL202. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
.........................................................................................................................................................................................................................AGGTTACGATCCTGGGAGGC............. 202.000.00--------------------------------------------1.00-----1.00---------------
..................................................................AGAATTATTATGTATAACC..................................................................................................................................................................... 191.000.00-----------------------------------------1.00------------------------
......................................................................................ATCAATGTCATGCCAGAAA................................................................................................................................................. 191.000.00-------------------------------------------------------1.00----------
.................................................................................................................................................................................................................CAGGATCGTAACCTCATGTTTA................... 2211.001.00--------------------------------------1.00---------------------------