ID: uc003vln.2_intron_2_0_chr7_124467360_r.5p
GENE: (15)
chr7:124475133-124475382-


(1)
AGO2.ip
(1)
B-CELL
(1)
BREAST
(5)
CELL-LINE
(2)
CERVIX
(1)
LIVER
(1)
OTHER
(1)
SKIN
(1)
UTERUS

Sense strand
TTGGACCTTTCAGCACCATTTCTTATACAAGGAACAATACATCACTATGGGTATTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTATTATACTTTTAAGTTCTGGGGTCATGTGCTGAACATGGAGGTTTGTTACGTAGGTATACACGTGCTATTGTGGTTTGCTGCACCCATCAACCCGTCACCTGCATTAGGCATTTCTCCTAATGCTGTCCTTCCCCTAGCCTCCCACCCCCTGACAGGCCCTGGT

..................................................51......................................................107.............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189783SRR037936(GSM510474)
293cand1. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577741(Rovira)
total RNA. (breast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040035(GSM532920)
G001T. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
.....................................................................................TATTATACTTTTAAGGGT...................................................................................................................................................184.000.00---4.00---------
..........................................................TTTTGTTTTGTTTTGTTTTGTTTTGTTTACG.................................................................................................................................................................314.000.001.00-3.00----------
....................................................ATTTTGTTTTGTTTTGTTTTGTTCCC............................................................................................................................................................................263.000.002.001.00-----------
...................................................TATTTTGTTTTGTTTTGTTTTGTCTAG............................................................................................................................................................................273.000.00-3.00-----------
....................................................ATTTTGTTTTGTTTTGTTTTGTTTTGTTCTG.......................................................................................................................................................................313.000.002.001.00-----------
....................................................ATTTTGTTTTGTTTTGTTTTGTTTTGTTC.........................................................................................................................................................................293.000.003.00------------
........................................................TGTTTTGTTTTGTTTTGTTTTGTTTTGTTCGC..................................................................................................................................................................322.000.002.00------------
...............................................................TTTTGTTTTGTTTTGTTTTGTTTATTCGAG.............................................................................................................................................................302.000.00-2.00-----------
....................................................ATTTTGTTTTGTTTTGTTTTGTTCCGG...........................................................................................................................................................................272.000.002.00------------
...................................................TATTTTGTTTTGTTTTGTTTTGTTTTGTTTCC.......................................................................................................................................................................322.000.00-2.00-----------
....................................................ATTTTGTTTTGTTTTGTTTTGTTCGAG...........................................................................................................................................................................272.000.002.00------------
.........................................................GTTTTGTTTTGTTTTGTTTTGTTTTGTTCATC.................................................................................................................................................................322.000.002.00------------
....................................................ATTTTGTTTTGTTTTGTTTTGTTTTGTCTCC.......................................................................................................................................................................312.000.002.00------------
....................................................ATTTTGTTTTGTTTTGTTTTGTTTTGTTCT........................................................................................................................................................................302.000.001.001.00-----------
.........................................................GTTTTGTTTTGTTTTGTTTTGTTTTGTTCACG.................................................................................................................................................................321.000.00--1.00----------
................................................................TTTGTTTTGTTTTGTTTTGTTTATCTTG..............................................................................................................................................................281.000.00--1.00----------
........................................................TGTTTTGTTTTGTTTTGTTTTGTTTTGTTCAC..................................................................................................................................................................321.000.001.00------------
...............................................TGGGTATTTTGTTTTGTTTTGTTTTGTT...............................................................................................................................................................................2811.001.001.00------------
....................................................ATTTTGTTTTGTTTTGTTTTGTTCTTC...........................................................................................................................................................................271.000.001.00------------
................................................................................TTGTTTATTATACTTTTAAGTTCTGGGGTCATG.........................................................................................................................................3311.001.00--1.00----------
................................................................TTTGTTTTGTTTTGTTTTGTTTATTCCC..............................................................................................................................................................281.000.00-1.00-----------
.................................................................TTGTTTTGTTTTGTTTTGTTTATCCCT..............................................................................................................................................................271.000.001.00------------
..............................................ATGGGTATTTTGTTTTGTTTTGTTCTG.................................................................................................................................................................................271.000.00-1.00-----------
.......................................................TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTGGC..................................................................................................................................................................331.000.001.00------------
.TGGACCTTTCAGCACCATTTC....................................................................................................................................................................................................................................2111.001.00---------1.00---
....................................................ATTTTGTTTTGTTTTGTTTTGTAAGG............................................................................................................................................................................261.000.001.00------------
.................................................................TTGTTTTGTTTTGTTTTGTTTATTTCG..............................................................................................................................................................271.000.00--1.00----------
...................................................TATTTTGTTTTGTTTTGTTTTGCTTG.............................................................................................................................................................................261.000.001.00------------
...............................................................TTTTGTTTTGTTTTGTTTTGTTTATTTCG..............................................................................................................................................................291.000.00-1.00-----------
....................................................ATTTTGTTTTGTTTTGTTTTGTTTTGCCC.........................................................................................................................................................................291.000.00-1.00-----------
...............................................................TTTTGTTTTGTTTTGTTTTGTTTATTATACC............................................................................................................................................................311.000.001.00------------
...................................................................GTTTTGTTTTGTTTTGTTTATTCCT..............................................................................................................................................................251.000.001.00------------
..................................................................TGTTTTGTTTTGTTTTGTTTATTAATG.............................................................................................................................................................271.000.00--1.00----------
...................................................TATTTTGTTTTGTTTTGTTTAGAG...............................................................................................................................................................................241.000.00-1.00-----------
..................................................GTATTTTGTTTTGTTTTGTTTTGTTCAGC...........................................................................................................................................................................291.000.00-1.00-----------
.............................................................TGTTTTGTTTTGTTTTGTTTTGTTTATTGTGG.............................................................................................................................................................321.000.001.00------------
..........................................................TTTTGTTTTGTTTTGTTTTGTTTTGTTTATGGT...............................................................................................................................................................331.000.001.00------------
..................................................GTATTTTGTTTTGTTTTGTTTAGG................................................................................................................................................................................241.000.001.00------------
...............................................................TTTTGTTTTGTTTTGTTTTGTTTATTTTCA.............................................................................................................................................................301.000.00-1.00-----------
...................................................TATTTTGTTTTGTTTTGTTTTGTTCAGC...........................................................................................................................................................................281.000.00-1.00-----------
....................................................ATTTTGTTTTGTTTTGTTTTGTTCTCT...........................................................................................................................................................................271.000.001.00------------
..................................................GTATTTTGTTTTGTTTTGTTTCGGA...............................................................................................................................................................................251.000.001.00------------
.............................................................TGTTTTGTTTTGTTTTGTTTTGTTTATTCCA..............................................................................................................................................................311.000.001.00------------
...............................................................TTTTGTTTTGTTTTGTTTTGTTTATTGCC..............................................................................................................................................................291.000.00-1.00-----------
..................................................GTATTTTGTTTTGTTTTGTTTTCAGG..............................................................................................................................................................................261.000.00-1.00-----------
....................TCTTATACAAGGAACAATACATCA..............................................................................................................................................................................................................2411.001.00------1.00------
....................................................ATTTTGTTTTGTTTTGTTTTGTTTTGTCC.........................................................................................................................................................................291.000.00-1.00-----------
...............................................................TTTTGTTTTGTTTTGTTTTGTTTATTCCC..............................................................................................................................................................291.000.00-1.00-----------
...............................................................TTTTGTTTTGTTTTGTTTTGTTTATTTTAA.............................................................................................................................................................301.000.00-1.00-----------
............................................................................................................................................................GTGGTTTGCTGCACCATG............................................................................181.000.00-----1.00-------
....................................................ATTTTGTTTTGTTTTGTTTTGTTTTGTTTCTC......................................................................................................................................................................321.000.001.00------------
...................................................TATTTTGTTTTGTTTTGTTTTGTTTTGTTCTG.......................................................................................................................................................................321.000.00--1.00----------
...................................................TATTTTGTTTTGTTTTGTTTTGGTTC.............................................................................................................................................................................261.000.001.00------------
....................................................ATTTTGTTTTGTTTTGTTTTGTTTTGTTTCTA......................................................................................................................................................................321.000.001.00------------
...............................................TGGGTATTTTGTTTTGTTTTGCTTT..................................................................................................................................................................................251.000.001.00------------
.........................................................GTTTTGTTTTGTTTTGTTTTGTTTTGTTCGCT.................................................................................................................................................................321.000.001.00------------
..............................................................GTTTTGTTTTGTTTTGTTTTGTTTACG.................................................................................................................................................................271.000.001.00------------
...................................................TATTTTGTTTTGTTTTGTTTTGGC...............................................................................................................................................................................241.000.001.00------------
....................................................ATTTTGTTTTGTTTTGTTTTGTTCCG............................................................................................................................................................................261.000.00-1.00-----------
.........................................................GTTTTGTTTTGTTTTGTTTTGTTTTGTTTACG.................................................................................................................................................................321.000.001.00------------
..............................................ATGGGTATTTTGTTTTGTTTTGTTTTGTC...............................................................................................................................................................................291.000.001.00------------
...................................................TATTTTGTTTTGTTTTGTTTCGC................................................................................................................................................................................231.000.00-1.00-----------
....................................................ATTTTGTTTTGTTTTGTTTTGTTTGCC...........................................................................................................................................................................271.000.00-1.00-----------
....................................................ATTTTGTTTTGTTTTGTTTTGTTTTGTTTCC.......................................................................................................................................................................311.000.001.00------------
..................................................................................................AGTTCTGGGGTCATGTGC......................................................................................................................................1820.500.50-----------0.50-

Antisense strand
TTGGACCTTTCAGCACCATTTCTTATACAAGGAACAATACATCACTATGGGTATTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTATTATACTTTTAAGTTCTGGGGTCATGTGCTGAACATGGAGGTTTGTTACGTAGGTATACACGTGCTATTGTGGTTTGCTGCACCCATCAACCCGTCACCTGCATTAGGCATTTCTCCTAATGCTGTCCTTCCCCTAGCCTCCCACCCCCTGACAGGCCCTGGT

..................................................51......................................................107.............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189783SRR037936(GSM510474)
293cand1. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577741(Rovira)
total RNA. (breast)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040035(GSM532920)
G001T. (cervix)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
............................................................................................................................................................GGTTGATGGGTGCAGCAAACCAC....................................................................... 2301.001.00--------1.00----
.....................................................................................TATTATACTTTTAAGTTGTT................................................................................................................................................. 201.000.00--1.00----------
.............................................................................GTTTTGTTTATTATACGGG.......................................................................................................................................................... 191.000.00----1.00--------
.....................................................................................................................................................................TGCACCCATCAACCCGTCAAAGA.............................................................. 231.000.00-------1.00-----
..........................................................................................................................................................................CCATCAACCCGTCACCTGCCT........................................................... 211.000.00----------1.00--
...................................................................................................................................................................ATGCAGGTGACGGGTTGATGGGTGCAGC........................................................... 2860.500.500.170.33-----------
...................................................................................................................................................................AATGCAGGTGACGGGTTGATGGGTGCAGC.......................................................... 2960.170.17-0.17-----------
......................................................................................................................................................................AATGCAGGTGACGGGTTGATGGGTGC.......................................................... 2660.170.170.17------------
.................................................................................................................................................................TGCAGGTGACGGGTTGATGGGTGCAGCAA............................................................ 2960.170.170.17------------
.......................................................................................................................................................................TGCAGGTGACGGGTTGATGGGTG............................................................ 2370.140.14-0.14-----------
............................................................................................................................................................................................................CTAGGGGAAGGACAGCATTA.......................... 2080.120.12------------0.12