ID: uc003vld.2_intron_2_0_chr7_123594579_f
GENE: (3)
chr7:123594529-123595100+


(4)
BRAIN
(13)
BREAST
(9)
CELL-LINE
(1)
FIBROBLAST
(1)
HEART
(1)
LIVER
(4)
OTHER
(2)
SKIN

Sense strand
CATATACCCGCATAGTTTTTACTGATCAAGTTTTGAAATTCCTTTCTCAAGTAAGTAAATCAGGGTATGAGGGCTAGGAAATGAAATTCACAAAAGATGTTGATTGAAATTTAATATTATTTTTGAAGGGAGTGAAATCTAGCTTTTAATATTAGTCAGGAATGTGTACACAAGTAGATCAACATTATTATATGAATGCAAAACAAGAATACGCTTAATCTTTAATGTAATCTCTTTATCTCTTAGTAAGCCGGGAGAATTAGGTAGTATAGACAGTGTATGAACTCAGTTTCTTTTTTTTTTCTTTCTTAGGCCTCGTCTCTTTTCAATAGAAGTGATTGAAACAATAATAGTATCTTATTTGTTTTATAGTAAGGCAATGGCTGTGTAAGAGATAGAAATAGTGGGGAAATATTAAAATTATTATTATTGGGTCAGCATGCTTAGCTTTTGCGTTGCTGTCCTATGTATAGCACTTTCATTTCATTTTTATCTGCTAACTCTTTCTGTCACATTTTCCAGGATGAACTTGTGTATACATTTGGCGAAACTGTTGCTCTGGGTGCTTCTGG
...................................................................(((((((((((..((....((((.(((.((((((((.......)))))))).))).))))....))....)))))))))))........................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150....................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343336SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR037936(GSM510474)
293cand1. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577453(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR343337SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................AAGTAAATCAGGGTAGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................193.000.00----------1.00--------1.00----1.00----------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTTCATTTCATTTTTTAG..............................................................................212.000.00--------2.00--------------------------
.................................................................................................................................................................................................................................................................................................TTTCTTTTTTTTTTCTTTCTCTTC...................................................................................................................................................................................................................................................................242.000.00-2.00---------------------------------
....................................................AAGTAAATCAGGGTAGGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................192.000.00-----------------1.00---------1.00-------
...............................................................................................................................................................................................................................................................................................AGTTTCTTTTTTTTTTCTGTG........................................................................................................................................................................................................................................................................212.000.002.00----------------------------------
.................................................................................................................................................................................................................................................................................................TTTCTTTTTTTTTTCTTTCTCTTG...................................................................................................................................................................................................................................................................242.000.00-2.00---------------------------------
.............................................................................................................................................................................................................................................................................................TCAGTTTCTTTTTTTTTCCAG..........................................................................................................................................................................................................................................................................211.000.00-------------------------1.00---------
................................................................................................................................................................................................................................................................................................GTTTCTTTTTTTTTTCGTCT........................................................................................................................................................................................................................................................................201.000.001.00----------------------------------
..................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTCTTTCCTTG....................................................................................................................................................................................................................................................................221.000.00-1.00---------------------------------
........................................................................................................................................................................................................................................................................................................TTTTTTTCTTTCTTAGGCCTGGCG............................................................................................................................................................................................................................................................241.000.001.00----------------------------------
...................................................................................................................................................................................................................................TAATCTCTTTATCTCCTA.......................................................................................................................................................................................................................................................................................................................................181.000.00-------------1.00---------------------
..............................................................................................................................................................................................................................................................................................CAGTTTCTTTTTTTTTGTGA..........................................................................................................................................................................................................................................................................201.000.00-1.00---------------------------------
....................................................................................................................................................................................................................................................................................................CTTTTTTTTTTCTTTCGAAG....................................................................................................................................................................................................................................................................201.000.001.00----------------------------------
...............................................................................................................................................................................................................................................................................................AGTTTCTTTTTTTTTTCTAATA.......................................................................................................................................................................................................................................................................221.000.001.00----------------------------------
...................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTCTTTCTCTAG...................................................................................................................................................................................................................................................................221.000.00------------1.00----------------------
...................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTCTTTCTTAG....................................................................................................................................................................................................................................................................2131.001.00------------0.67--------------------0.33-
..................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTCTTTCTGGC....................................................................................................................................................................................................................................................................221.000.001.00----------------------------------
..........................................................................................................................................................................................................................................................................................AACTCAGTTTCTTTTTTTTTTG............................................................................................................................................................................................................................................................................221.000.00----------------1.00------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTGCTCTGGGTGTTT....191.000.00---------------------1.00-------------
..................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTCTTTCGG......................................................................................................................................................................................................................................................................201.000.00-1.00---------------------------------
.................................................................................................................................................................................................................................................................................................TTTCTTTTTTTTTTCTTTCTTGC....................................................................................................................................................................................................................................................................231.000.00-1.00---------------------------------
...............................................................................................................................................................................................................................................................................................AGTTTCTTTTTTTTTTCTCCCC.......................................................................................................................................................................................................................................................................221.000.001.00----------------------------------
...............................................................................................................................................................................................................................................................................................AGTTTCTTTTTTTTTTCTTTCTTC.....................................................................................................................................................................................................................................................................241.000.001.00----------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAATATTAAAATTATTATGT...............................................................................................................................................201.000.00------------------------------1.00----
...........................................................................................................................................................................................................................................................................................ACTCAGTTTCTTTTTTTTTTCTTTTGGA.....................................................................................................................................................................................................................................................................281.000.001.00----------------------------------
.....................................................................................................................................................................................................................................................................................................TTTTTTTTTTCTTTCTTAGATGG................................................................................................................................................................................................................................................................231.000.001.00----------------------------------
...............................................................................................................................................................................................................................................................................................AGTTTCTTTTTTTTTTCTCGG........................................................................................................................................................................................................................................................................211.000.001.00----------------------------------
...............................................................................................................................................................................................................................................................................................AGTTTCTTTTTTTTTTCTTAAGC......................................................................................................................................................................................................................................................................231.000.001.00----------------------------------
.......................................................................................................................................................................................................................................................................................................TTTTTTTTCTTTCTTAGATGC................................................................................................................................................................................................................................................................211.000.001.00----------------------------------
..................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTCTTTCTGGTT...................................................................................................................................................................................................................................................................231.000.001.00----------------------------------
.......................................................................................................................................................................................................................................................................................................TTTTTTTTCTTTCTTAGATGG................................................................................................................................................................................................................................................................211.000.001.00----------------------------------
...................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTCTTTCTTCCCT..................................................................................................................................................................................................................................................................231.000.001.00----------------------------------
.................................................................................................................................................................................................................................................................................................TTTCTTTTTTTTTTCTTTCTTGGT...................................................................................................................................................................................................................................................................241.000.00-1.00---------------------------------
...............................................................................................................................................................................................................................................................................................AGTTTCTTTTTTTTTTCAGAC........................................................................................................................................................................................................................................................................211.000.00-1.00---------------------------------
.......................................................................................................................................................................................................................................................................................................TTTTTTTTCTTTCTTAGATG.................................................................................................................................................................................................................................................................201.000.00-----------1.00-----------------------
....................................................................................................................................................................................................................................................................................................CTTTTTTTTTTCTTTCTTGGCC..................................................................................................................................................................................................................................................................221.000.001.00----------------------------------
...................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTCTTTCGCC.....................................................................................................................................................................................................................................................................201.000.001.00----------------------------------
...................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTCTTTCTTAAAG..................................................................................................................................................................................................................................................................231.000.00-----------1.00-----------------------
...................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTCTTTCTTAATG..................................................................................................................................................................................................................................................................231.000.00--------1.00--------------------------
...................................................................................................................................................................................................................................................................................................TCTTTTTTTTTTCTTTCGAGC....................................................................................................................................................................................................................................................................211.000.001.00----------------------------------
....................................................AAGTAAATCAGGGTAGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------1.00------------------------
......................................................................................................................................................................................................................................................................................................TTTTTTTTTCTTTCTTAGCATT................................................................................................................................................................................................................................................................221.000.001.00----------------------------------
...............................................................................................................................................................................................................................................................................................AGTTTCTTTTTTTTTTCTTCGGA......................................................................................................................................................................................................................................................................231.000.001.00----------------------------------
.................................................................................................................................................................................................................................................................................................TTTCTTTTTTTTTTCTTTCGGAG....................................................................................................................................................................................................................................................................231.000.001.00----------------------------------
.................................................................................................................................................................................................................................................................................................TTTCTTTTTTTTTTCTTTCTTGGTT..................................................................................................................................................................................................................................................................251.000.001.00----------------------------------
.............................................................................................................................................................................................................................................................................................TCAGTTTCTTTTTTTTTTCTTTCTG......................................................................................................................................................................................................................................................................251.000.001.00----------------------------------
.................................................................................................................................................................................................................................................................................................TTTCTTTTTTTTTTCTTTCGGC.....................................................................................................................................................................................................................................................................221.000.001.00----------------------------------
..................................................................................................................................................................................................................................................................................................TTCTTTTTTTTTTCTTTCTTGGTT..................................................................................................................................................................................................................................................................241.000.001.00----------------------------------
.................................................................................................................................................................................................................................................................................................TTTCTTTTTTTTTTCTTTCTTGTC...................................................................................................................................................................................................................................................................241.000.001.00----------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAGAGATAGAATTGT........................................................................................................................................................................191.000.00------------------1.00----------------
............................................................................................................................................................................................................................................................................................CTCAGTTTCTTTTTTTTTTCT...........................................................................................................................................................................................................................................................................2140.250.25-------------0.25---------------------
....................................................................................................................................................................................................................................................................................................CTTTTTTTTTTCTTTCTTAG....................................................................................................................................................................................................................................................................2060.170.170.17----------------------------------
...............................................................................................................................................................................................................................................................................................AGTTTCTTTTTTTTTTCTTTCGG......................................................................................................................................................................................................................................................................2370.140.140.14----------------------------------
...............................................................................................................................................................................................................................................................................................AGTTTCTTTTTTTTTTCTTTC........................................................................................................................................................................................................................................................................2170.140.14-------------0.14---------------------

Antisense strand
CATATACCCGCATAGTTTTTACTGATCAAGTTTTGAAATTCCTTTCTCAAGTAAGTAAATCAGGGTATGAGGGCTAGGAAATGAAATTCACAAAAGATGTTGATTGAAATTTAATATTATTTTTGAAGGGAGTGAAATCTAGCTTTTAATATTAGTCAGGAATGTGTACACAAGTAGATCAACATTATTATATGAATGCAAAACAAGAATACGCTTAATCTTTAATGTAATCTCTTTATCTCTTAGTAAGCCGGGAGAATTAGGTAGTATAGACAGTGTATGAACTCAGTTTCTTTTTTTTTTCTTTCTTAGGCCTCGTCTCTTTTCAATAGAAGTGATTGAAACAATAATAGTATCTTATTTGTTTTATAGTAAGGCAATGGCTGTGTAAGAGATAGAAATAGTGGGGAAATATTAAAATTATTATTATTGGGTCAGCATGCTTAGCTTTTGCGTTGCTGTCCTATGTATAGCACTTTCATTTCATTTTTATCTGCTAACTCTTTCTGTCACATTTTCCAGGATGAACTTGTGTATACATTTGGCGAAACTGTTGCTCTGGGTGCTTCTGG
...................................................................(((((((((((..((....((((.(((.((((((((.......)))))))).))).))))....))....)))))))))))........................................................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150....................................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577740(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343336SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR037936(GSM510474)
293cand1. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577453(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR343337SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................TTTTGAAATTCCTTTCTCAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 229.000.00--0.503.000.501.000.501.00-1.50------------------0.50---0.50--
...............................TTTGAAATTCCTTTCTCAGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 228.000.00--3.001.001.001.00---1.00----------------1.00--------
.................................TGAAATTCCTTTCTCATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 203.000.00--2.00-1.00------------------------------
................................TTGAAATTCCTTTCTCATAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 213.000.00--1.00-1.001.00-----------------------------
...............................TTTGAAATTCCTTTCTCAGGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 222.000.00------1.00----------------------1.00-----
..............................TTTTGAAATTCCTTTCTCAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 221.500.00---1.00------------------------0.50------
..............................TTTTGAAATTCCTTTCTCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.500.00---0.500.50-0.50----------------------------
..............................TTTTGAAATTCCTTTCTCAGCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 231.000.00---0.50---0.50---------------------------
.......................................................................................................................................................................................................................................................................................................................................AATAGAAGTGATTGAATT................................................................................................................................................................................................................................... 181.000.00----------------------1.00------------
.................................TGAAATTCCTTTCTCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00-------1.00---------------------------
......................................................................................................................................................................................................................................................................................................................................CAATAGAAGTGATTGCT..................................................................................................................................................................................................................................... 171.000.00--------------1.00--------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATGCTTAGCTATAA....................................................................................................................... 191.000.00-----------------------1.00-----------
................................TTGAAATTCCTTTCTCATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00-----1.00-----------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACATTTTCCAGCCA............................................... 181.000.00---------------1.00-------------------
.................................TGAAATTCCTTTCTCAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00----1.00------------------------------
...............................TTTGAAATTCCTTTCTCAGGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 221.000.00------1.00----------------------------
........................................................................................................................................................................................................................AATCTTTAATGTAATTAGC................................................................................................................................................................................................................................................................................................................................................. 191.000.00--------------------1.00--------------
.................................TGAAATTCCTTTCTCAGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00--1.00--------------------------------
................................TTGAAATTCCTTTCTCATAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00----1.00------------------------------
...............................TTTGAAATTCCTTTCTCATGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 221.000.00-----1.00-----------------------------
.................................TGAAATTCCTTTCTCATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00-------1.00---------------------------
................................TTGAAATTCCTTTCTCAGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 201.000.00------1.00----------------------------
................................TTGAAATTCCTTTCTCAGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00-------1.00---------------------------
..............................TGAGAAAGGAATTTCAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1920.500.50-------------------------------0.50---
..............................TTTTGAAATTCCTTTCTCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 210.500.00------0.50----------------------------
..............................TTTTGAAATTCCTTTCTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 200.500.00-----0.50-----------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGCACCCAGAGC 1740.250.25----------------------------------0.25