ID: uc003vjk.2_intron_2_0_chr7_120450625_r.3p
GENE: (5)
chr7:120450575-120450824-


(1)
AGO1.ip 		(3)
AGO2.ip 		(6)
BREAST 		(16)
CELL-LINE 		(1)
FIBROBLAST 		(3)
HEART 		(3)
HELA 		(1)
OTHER 		(7)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
ATTGAGATTGTCCAATAACTACATTGAATACTCTGAGCTAAATTTAGGCCATGAGCAAATATAAATTTAAAATAGTATTTGTCAATTAGAAGACATTCCGAGTATGCGTGTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATCTGTGTCTGTGTGTGAGCTACAGCTGTTGATATTTTGCTTTTTATCACCAGGTTCCAGTACAATGGTCAGATATGGTCACTTTGAAAGCCAGGATGACAAA
............................................................................................................((..((((..((..((......))..))..))))..))...(((((.((.......)).)))))(((.(((((..........))))).)))..................................................
...........................................................................................................108.........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189787SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR189784SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359177(GSM359177)
hela_nucl_a. (hela)
................................................................................................................TACGTGTGTGTGTGTGTGTGTAGA..................................................................................................................24029.002.001.0016.00----3.00---------2.00--1.001.001.001.00----1.00------1.00-1.00-----
................................................................................................................TACGTGTGTGTGTGTGTGTGTACT..................................................................................................................24013.002.009.00-3.00----------1.00----------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGTAAC..................................................................................................................24013.002.002.00-1.006.00-------------2.002.00-----------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGTAAAA.................................................................................................................2504.002.00------1.00-----1.00------------------------1.00--1.00-
................................................................................................................TACGTGTGTGTGTGTGTGTTAT....................................................................................................................223.000.00---------3.00--------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGT.....................................................................................................................2102.002.00--------1.00--1.00------------------------------
..................................................................................................................................................................................................................................CACTTTGAAAGCCAGGATGACA..2212.002.00----1.00---------------1.00---------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGTA....................................................................................................................2202.002.00-----------1.00---------------------------1.00--
................................................................................................................TACGTGTGTGTGTGTGTGGGCA....................................................................................................................222.000.001.00-1.00---------------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGCAAA..................................................................................................................2402.001.002.00-----------------------------------------
.........................................................................................................................................................................................................TTCCAGTACAATGGTCAGATATGGTCACTCTG.................322.000.00----------2.00-------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGCAGA..................................................................................................................2402.001.002.00-----------------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGAT....................................................................................................................2202.001.00-----1.00-------------------1.00----------------
................................................................................................................TACGTGTGTGTGTGTGTGTGTACTT.................................................................................................................2502.002.002.00-----------------------------------------
..................................................................................................................................................................................................................................CACTTTGAAAGCCAGGATGAC...2112.002.00----1.00---------------------------------1.00---
.....................................................................................................................................................................................................................................TTTGAAAGCCAGGATGACA..1911.001.00----1.00-------------------------------------
.................................................................................................................ACGTGTGTGTGTGTGTGTGTGGAC.................................................................................................................241.000.00-------------------------------1.00----------
..................................................................................................................CGTGTGTGTGTGTGTGTGTGTGTCCGT.............................................................................................................271.000.00----------------------------1.00-------------
................................................................................................................TACGTGTGTGTGTGTGTGTGAAGA..................................................................................................................2401.001.00--------------------------------1.00---------
..............................................................................................................TGTACGTGTGTGTGTGTGTGTGTGTGTGTGCGT...........................................................................................................331.000.00---------------1.00--------------------------
................................................................................................................................................................................................................ACAATGGTCAGATATGGTCACTTTGA................2611.001.00-----------------------------------------1.00
................................................................................................................TACGTGTGTGTGTGTGTGTGAAAA..................................................................................................................2401.001.00---------------------------------1.00--------
................................................................................................................TACGTGTGTGTGTGTGTGGGC.....................................................................................................................211.000.00--1.00---------------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGTAGC..................................................................................................................2401.002.001.00-----------------------------------------
..........................................................................................................................................................................................................................GATATGGTCACTTTGAAAGCCAGGATGAC...2911.001.00--------------1.00---------------------------
.....................................................................................................................................................................................................................................TTTGAAAGCCAGGATGAC...1811.001.00----1.00-------------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTTA.....................................................................................................................211.000.00------------1.00-----------------------------
........................................................................................................TGCGTGTGTACGTGTGTGTCCT............................................................................................................................221.000.00-------1.00----------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGCAAT..................................................................................................................2401.001.001.00-----------------------------------------
............................................................................................................TGTGTACGTGTGTGTGTGTGGG........................................................................................................................221.000.00-------1.00----------------------------------
................................................................................................................TACGTGTGTGTGTGTGATTT......................................................................................................................201.000.00------------------------1.00-----------------
................................................................................................................TACGTGTGTGTGTGTGTGTGTAGAA.................................................................................................................2501.002.00--------------------------1.00---------------
................................................................................................................TACGTGTGTGTGTGTGTGTGTAT...................................................................................................................2301.002.00-----------1.00------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGAAC...................................................................................................................2301.001.001.00-----------------------------------------
.....................................................................................................................................................................................TTTTGCTTTTTATCACCATA.................................................201.000.00-----1.00------------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGTACGA.................................................................................................................2501.002.001.00-----------------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGTCAA..................................................................................................................2401.002.00------------1.00-----------------------------
...............................................................................................................................................................................................................TACAATGGTCAGATATGGT........................1911.001.00--------------1.00---------------------------
.....................................................................................................................................................CTGTGTCTGTGTGTGAGTGTC................................................................................211.000.00----------1.00-------------------------------
.........................................................................................................................................................................................................................................AAAGCCAGGATGACAGGCG191.000.00-------1.00----------------------------------
..................................................................................................................................................................................................................AATGGTCAGATATGGTCACTTTGAAAGCCA..........3011.001.00------------------------------1.00-----------
................................................................................................................TACGTGTGTGTGTGTGTGTGTG....................................................................................................................2201.001.00--------1.00---------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTG......................................................................................................................2001.001.00-----------------------------1.00------------
................................................................................................................TACGTGTGTGTGTGTGTGTGTAACT.................................................................................................................2501.002.00-------------1.00----------------------------
........................................................................................................................................................................................................................CAGATATGGTCACTTTGAAAGCCAGGAT......2811.001.00----1.00-------------------------------------
................................................................................................................TACGTGTGTGTGTGTGAAT.......................................................................................................................191.000.00-------------------1.00----------------------
................................................................................................................TACGTGTGTGTGTGTGTGTTTAG...................................................................................................................231.000.00-----------------------------------1.00------
................AACTACATTGAATACTCGGTT.....................................................................................................................................................................................................................211.000.00-----------------------1.00------------------
.................................................................................................................ACGTGTGTGTGTGTGTGTGTGTGTGTGGGG...........................................................................................................301.000.00-------1.00----------------------------------
................................................................................................................TACGTGTGTGTGTGTGGGA.......................................................................................................................191.000.00-----1.00------------------------------------
................................................................................................................TACGTGTGTGTGTGTGTGTGAAAC..................................................................................................................2401.001.00--1.00---------------------------------------

Antisense strand
ATTGAGATTGTCCAATAACTACATTGAATACTCTGAGCTAAATTTAGGCCATGAGCAAATATAAATTTAAAATAGTATTTGTCAATTAGAAGACATTCCGAGTATGCGTGTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATCTGTGTCTGTGTGTGAGCTACAGCTGTTGATATTTTGCTTTTTATCACCAGGTTCCAGTACAATGGTCAGATATGGTCACTTTGAAAGCCAGGATGACAAA
............................................................................................................((..((((..((..((......))..))..))))..))...(((((.((.......)).)))))(((.(((((..........))))).)))..................................................
...........................................................................................................108.........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189787SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR189784SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359177(GSM359177)
hela_nucl_a. (hela)
.....................................................................................TTAGAAGACATTCCGGG.................................................................................................................................................... 171.000.00---------------1.00--------------------------
..........................AATACTCTGAGCTAAAGGCG............................................................................................................................................................................................................ 201.000.00-----1.00------------------------------------
................................................................................................................ACACACACACACACACACGTA..................................................................................................................... 2101.001.00--------1.00---------------------------------
.....................................................................................................................................................................................................TTGTACTGGAACCTG...................................... 1540.250.25---------------------0.25--------------------