ID: uc003vij.2_intron_10_0_chr7_116403323_f.3p
GENE: (11)
chr7:116409499-116409748+


(1)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN

Sense strand
TTCCTAACTAACACATGCCCTGAAATGGTCATGCTCCCCTTTAGCCATCCCAATTCCCATGAAAATTAGTATCATAGAATCGTGTGCCTTGGCAAACAACATGGCCTGTGTTTGCAGTATATTTATATTCCTTTGCCATTGTTAGCATTCCTGCAGAACTGTGAAGTGTTAACAACCTTTTTTTTTTTTTTTCCTTTCAGGGAAATGATATTGACCCTGAAGCAGTTAAAGGTGAAGTGTTAAAAGTTGG
...........................................................(((((....(((.....((((.((((((....((((((.(((.....))))))))).))))))....))))...)))..(((((((((((..((((....)))).)))))))))))...................)))))...................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		TAX577744(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTAAT.......................................................23362.000.00190.00149.0013.0010.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTAAG..................................................28245.000.0077.0095.0044.0028.00-1.00-----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTATG.......................................................2398.000.0052.0038.005.003.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTATT.......................................................2384.000.0050.0030.004.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTAAG...................................................27278.501.0031.0027.5011.008.50-0.50-----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTAAAG..................................................28266.001.0030.0034.001.001.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTTTA.....................................................2559.000.0021.0035.001.002.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTATG........................................................2255.000.0030.0022.003.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTATT........................................................2254.000.0037.0015.002.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTAT........................................................2254.000.0027.0023.001.003.00-------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTATG...................................................2333.000.0012.0013.001.006.00-1.00-----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTAGG.......................................................2324.000.0013.009.002.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTAAA...................................................27214.501.006.008.000.50--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTAAAG...................................................2713.000.002.009.001.001.00-------------------------
.........................................................CATGAAAATTAGTATCATA..............................................................................................................................................................................19113.0013.00-------1.002.001.00-2.002.00-1.002.001.00--1.00---------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTAAG.......................................................2412.000.002.005.003.002.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTAAG.....................................................258.000.003.001.002.002.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTAAT..................................................288.000.003.003.001.001.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTAGT.......................................................238.000.005.003.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTAA...................................................278.000.001.003.001.002.00-1.00-----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTACG.......................................................237.000.006.00-1.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTAAGG..................................................2826.001.003.002.500.50--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTAAGG......................................................246.000.004.002.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCAAG......................................................245.000.001.001.003.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTAGG........................................................225.000.002.003.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTAAAT......................................................245.000.001.001.002.001.00-------------------------
.......................................................CCCATGAAAATTAGTATCATA..............................................................................................................................................................................2115.005.00-------3.001.001.00-------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTCAAG..................................................2824.501.001.501.501.50--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTACTT..........................................................204.000.00--2.00--2.00-----------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTCAG..................................................2414.004.00-1.001.002.00-------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTCAAG...................................................244.000.001.001.002.00--------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTAATC.................................................273.000.00----2.00-1.00----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTAGG..................................................283.000.001.002.00---------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTAA...................................................253.000.00-2.00--1.00------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTATT........................................................233.000.003.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTCAAG...................................................273.000.00-2.00-1.00-------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTAAAG.......................................................243.000.001.001.001.00--------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTCCTTTAAG..................................................293.000.001.001.001.00--------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCTTAAAG..................................................273.000.001.002.00---------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCTTTAAG..................................................273.000.001.001.00-1.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTAT...................................................273.000.00-2.00-1.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTCAAG.......................................................233.000.001.001.001.00--------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTAATA.................................................253.000.00-1.00-2.00-------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCTTAAG...................................................263.000.001.001.001.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTAAAT..................................................2823.001.001.501.000.50--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTAAT.....................................................253.000.00---3.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTAAA..................................................283.000.002.001.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTATAT......................................................242.000.001.001.00---------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTCTTTG.....................................................262.000.00---2.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCAT.......................................................232.000.00-2.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTTG...................................................272.000.001.001.00---------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTCTTG......................................................252.000.00---2.00-------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCCTTTCAAGG................................................252.000.00----1.001.00-----------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTATT.......................................................242.000.001.001.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTAAT...................................................2722.001.001.00--1.00-------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTCTTTA.....................................................262.000.00-2.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTATG..................................................282.000.002.00----------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTAAG...................................................252.000.001.001.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTTAG..................................................282.000.00-1.00-1.00-------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCCTTTCCGG.................................................242.000.00--1.00-1.00------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTAAT.......................................................242.000.001.00-1.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTTAA.....................................................252.000.001.001.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTACG........................................................222.000.001.001.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTCAG.....................................................252.000.00--1.001.00-------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCGG.......................................................222.000.00----2.00------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTAAG..................................................262.000.001.00--1.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTAG...................................................272.000.002.00----------------------------
....................................................................................................................................................................................TTTTTTTTTTTTCCTTTCGGAG................................................222.000.00----2.00------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTCTG..........................................................212.000.001.00-1.00--------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTTGAC.................................................272.000.00----2.00------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCCTTTCCATG................................................242.000.00----2.00------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTGAC..................................................262.000.00------2.00----------------------
........................................................CCATGAAAATTAGTATCATA..............................................................................................................................................................................2012.002.00---------1.00-----------1.00-------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTCA...................................................2322.002.001.50-0.50--------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCCTTTCCATG................................................252.000.00---1.00-1.00-----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTCAAT.......................................................232.000.001.00-1.00--------------------------
......................................................TCCCATGAAAATTAGTATCATA..............................................................................................................................................................................2212.002.00--------------1.00-----------1.00--
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTAATG......................................................242.000.002.00----------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCTAAG.....................................................242.000.001.00--1.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTCCTT.......................................................232.000.00-1.001.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTAA....................................................2621.501.000.500.500.50--------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCCG......................................................221.000.001.00----------------------------
.................................CTCCCCTTTAGCCATCCC.......................................................................................................................................................................................................1811.001.00-------1.00---------------------
...................................................................................................................................................................................TTTTTTTTTTTTTCCTTTCGGTT................................................231.000.00----1.00------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTCTC...................................................251.000.00------1.00----------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTCTTT.................................................271.000.00----1.00------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCCTTTCAGGA................................................241.000.00------1.00----------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTCCTTAAG...................................................281.000.00-1.00---------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCCTTG....................................................241.000.00----1.00------------------------
........................................................................................................................................................................TTAACAACCTTTTTTTTTG...............................................................191.000.00------------------1.00----------
.......................................................................................................................................................................................TTTTTTTTTCCTTTCAGGGCGGG............................................231.000.00----1.00------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTCAT.......................................................241.000.001.00----------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTATTT...................................................241.000.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTTCG.....................................................251.000.00-1.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTAAA....................................................261.000.00---1.00-------------------------
.........................................................................................................................................................................TAACAACCTTTTTTTTTTTTTTTTCGG......................................................271.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTATTG......................................................241.000.00-1.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTAG......................................................241.000.00-1.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTCT...................................................271.000.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTATG.....................................................251.000.001.00----------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCCCC.....................................................231.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTATTT......................................................241.000.001.00----------------------------
.......................................................................................................................................................................................TTTTTTTTTCCTTTCAGGTC...............................................201.000.00----1.00------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCCTTTCAAATG...............................................251.000.00---1.00-------------------------
..........................................................................................................................................................................AACAACCTTTTTTTTTTTTTTTCTT.......................................................251.000.00-----1.00-----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTCTG.....................................................251.000.001.00----------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTCCCG.................................................251.000.00----1.00------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTAAAG......................................................251.000.00-----1.00-----------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTCGG.......................................................241.000.00----1.00------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCGGAG.....................................................241.000.00------1.00----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTCATG.......................................................231.000.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTACCT......................................................241.000.00-1.00---------------------------
...................................................................................................................................................................................TTTTTTTTTTTTTCCTTTCATTTA...............................................241.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTTT...................................................271.000.00---1.00-------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTTTTT.................................................271.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTATAG......................................................241.000.001.00----------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTGG........................................................231.000.001.00----------------------------
....................................................................................................................................................................................TTTTTTTTTTTTCCTTTCGGC.................................................211.000.00------1.00----------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTATAG..................................................241.000.00--1.00--------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTCGGG..................................................261.000.00----1.00------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTACAG.................................................251.000.00---1.00-------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCACGG.....................................................241.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTTCG..................................................281.000.00-1.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTAG.....................................................251.000.00--1.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTATT..................................................281.000.00-1.00---------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTTTCAAAAG...............................................281.000.00---1.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTGAG...................................................2721.001.00--1.00--------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTTTACG..................................................251.000.00-1.00---------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTCTT..................................................261.000.00----1.00------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCCTTTCACTAA...............................................251.000.00-----1.00-----------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTACGG...................................................231.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTCAT.....................................................251.000.00--1.00--------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTCCCC.................................................251.000.00----1.00------------------------
.............................................................................................................................TATTCCTTTGCCATTGTTAGAAG......................................................................................................231.000.00-------------1.00---------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTAAAA.......................................................231.000.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTAGT..................................................281.000.001.00----------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCCTTTCCCCC................................................241.000.00----1.00------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTCGGG...................................................251.000.00----1.00------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTCCC...................................................251.000.00----1.00------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCCTTTCCCG.................................................231.000.00---1.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCATT......................................................241.000.00-----1.00-----------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCCTAG....................................................231.000.00--1.00--------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCCTTTCATAT................................................241.000.00------1.00----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTATCT..........................................................201.000.00-----1.00-----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTATAG..........................................................201.000.001.00----------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTCTC.......................................................241.000.00----1.00------------------------
......................................................................................................................................................................................................................................GGTGAAGTGTTAAAAGTTG.1911.001.00----------1.00------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTAACG...................................................271.000.00---1.00-------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCGGAG....................................................251.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTGAG..................................................281.000.00-1.00---------------------------
.....................................................................................................................................................................................................CAGGGAAATGATATTGTCAA.................................201.000.00-------------1.00---------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCTCAAA...................................................261.000.00--1.00--------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCCTAT....................................................231.000.00---1.00-------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTTTCC.................................................271.000.00----1.00------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCGG......................................................221.000.00----1.00------------------------
.............................................................................................................................................TTAGCATTCCTGCAGAACTGTGAAGTGTTA...............................................................................3011.001.00-----------------1.00-----------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTCTGGC................................................281.000.00----1.00------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCGGGG....................................................241.000.00------1.00----------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCTTC......................................................231.000.00----1.00------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCTTAAA...................................................261.000.00-1.00---------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTTATTG..................................................251.000.001.00----------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCTTTCG...................................................261.000.00--1.00--------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTAATT.................................................251.000.00---1.00-------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCCCG.....................................................231.000.00-----1.00-----------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTCGA..........................................................211.000.00----1.00------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCCTTTCGTTG................................................241.000.00-----1.00-----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTCAAG.........................................................211.000.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTACT.....................................................251.000.001.00----------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTGGAA.................................................271.000.00----1.00------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTACAG.................................................271.000.00------1.00----------------------
...................................................................................................................................................................................................................................AAAGGTGAAGTGTTAAAAGTT..2111.001.00----------1.00------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTAAAA......................................................251.000.001.00----------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTCTTG.......................................................241.000.00--1.00--------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCCTTTCAAACG...............................................261.000.00--1.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTAC...................................................271.000.00---1.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTATAT.......................................................231.000.001.00----------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTGTT.......................................................241.000.00-----1.00-----------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCCCCC....................................................251.000.00----1.00------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTTCCTTTCGGC.................................................231.000.00----1.00------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTCT....................................................241.000.00----1.00------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTGTTG.........................................................221.000.00-1.00---------------------------
.........................................................................................................................................................................TAACAACCTTTTTTTTTTTTTTTCCTAATG...................................................301.000.00---1.00-------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCGGAG.....................................................231.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTCAGG..................................................2821.001.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCATAT.....................................................251.000.00-1.00---------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCGAGA.....................................................241.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTAAAC..................................................2821.001.001.00----------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCACG.....................................................241.000.00-1.00---------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTATG.......................................................241.000.001.00----------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCTATG.....................................................241.000.00---1.00-------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCCTTTCATTG................................................251.000.00--1.00--------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCTTTTTG..................................................271.000.00--1.00--------------------------
.....................................................................................................................................................................................TTTTTTTTTTTCCTTTCAGGCTAT.............................................241.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTATG...........................................................191.000.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTCTG..........................................................201.000.00---1.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTCCAG.......................................................231.000.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCTTC......................................................241.000.00----1.00------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTCCTTG................................................261.000.00-1.00---------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTTTGC.................................................271.000.00------1.00----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCAAAG.....................................................251.000.00--1.00--------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTCTTTT.....................................................261.000.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTGTAG..........................................................201.000.001.00----------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTTAAAG..................................................251.000.00-1.00---------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCCTTTCCCG.................................................241.000.00---1.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTCCTT.........................................................211.000.001.00----------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCCTTTCCCCG................................................251.000.00---1.00-------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTTTCG...................................................241.000.00---1.00-------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTCGG........................................................231.000.00------1.00----------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTAAGG..................................................241.000.00--1.00--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTATA.......................................................231.000.00-1.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTCCG........................................................221.000.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTTAAT.................................................291.000.00--1.00--------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCTTTA.....................................................241.000.00-1.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTATTT.......................................................231.000.001.00----------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCCGG.....................................................231.000.00----1.00------------------------
............................................................................................................................................................................................................ATGATATTGACCCTGAAGCA..........................2011.001.00-------------------------1.00---
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTCCGAG................................................281.000.00------1.00----------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTACG.........................................................221.000.00---1.00-------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTGTGG........................................................231.000.00-1.00---------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTAT........................................................231.000.001.00----------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTTCCTTTCACAAG...............................................261.000.00---1.00-------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCTTTGAG..................................................271.000.00----1.00------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTTTATG..................................................251.000.00---1.00-------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTAG........................................................231.000.001.00----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTAAGT..................................................2821.001.000.500.50---------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTTAAG...................................................241.000.00-1.00---------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTCTTT...................................................241.000.00---1.00-------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTTTGG.................................................271.000.00----1.00------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTAAAG..................................................261.000.00---1.00-------------------------
.............................................................................................................................................................................AACCTTTTTTTTTTTTTTTCCTTTTAAG.................................................281.000.00-1.00---------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTCG.........................................................221.000.00---1.00-------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTAATA...................................................231.000.00---1.00-------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTTTCAG..................................................2511.001.00---1.00-------------------------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTGGCC...................................................241.000.00------1.00----------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTAAGT......................................................241.000.001.00----------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTTTG..................................................261.000.00---1.00-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTTCAG..................................................2811.001.00-1.00---------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTCG...................................................251.000.00---1.00-------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTCAAC.................................................2521.002.00----0.50-0.50----------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTGTG..........................................................211.000.00-1.00---------------------------
...........................................................................................................................................................................ACAACCTTTTTTTTTTTTTTTCC........................................................2311.001.00-1.00---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTT......................................................2421.001.00-1.00---------------------------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCTTTCAGC.................................................271.000.00----1.00------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTACA...................................................2720.501.000.50----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCAAA.....................................................2520.500.50---0.50-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTCAG...................................................2720.501.00-0.50---------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTCATG.................................................2520.502.00----0.50------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTACT...................................................2720.501.000.50----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTACAG..................................................2820.501.00-0.50---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCATT.....................................................2520.500.500.50----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTAGA...................................................2720.501.00---0.50-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCCAAG....................................................2620.500.50---0.50-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTATG...................................................2720.501.00-0.50---------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTA.....................................................2520.501.00---0.50-------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTCAACC................................................2620.502.00---0.50-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCAAAG....................................................2620.500.50---0.50-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCCACG....................................................2620.500.50--0.50--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCAG......................................................2420.500.50--0.50--------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTCAACTT...............................................2720.502.000.50----------------------------
................................................................................................................................................................................CTTTTTTTTTTTTTTTCCTTTCAACT................................................2620.502.00---0.50-------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCAAG.....................................................2520.500.50--0.50--------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCC........................................................2220.500.500.50----------------------------
............................................................................................................................................................................CAACCTTTTTTTTTTTTTTTCCTTCA....................................................2620.501.00-0.50---------------------------
............................................................GAAAATTAGTATCATA..............................................................................................................................................................................1640.250.25----------------0.25------------
..............................................................................................................................ATTCCTTTGCCATTGTT...........................................................................................................1740.250.25----------------------------0.25
.....................................................................................................................................................................................TTTTTTTTTTTCCTTTCAGGG................................................2140.250.25----0.25------------------------
......................................................................................................................................................................................TTTTTTTTTTCCTTTCAGG.................................................1990.220.22----0.22------------------------
....................................................................................................................................................................................TTTTTTTTTTTTCCTTTCAGG.................................................2150.200.20----0.20------------------------

Antisense strand
TTCCTAACTAACACATGCCCTGAAATGGTCATGCTCCCCTTTAGCCATCCCAATTCCCATGAAAATTAGTATCATAGAATCGTGTGCCTTGGCAAACAACATGGCCTGTGTTTGCAGTATATTTATATTCCTTTGCCATTGTTAGCATTCCTGCAGAACTGTGAAGTGTTAACAACCTTTTTTTTTTTTTTTCCTTTCAGGGAAATGATATTGACCCTGAAGCAGTTAAAGGTGAAGTGTTAAAAGTTGG
...........................................................(((((....(((.....((((.((((((....((((((.(((.....))))))))).))))))....))))...)))..(((((((((((..((((....)))).)))))))))))...................)))))...................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		TAX577744(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................................................................TTTCCTTTCAGGGAAATTGT......................................... 201.000.00----------------------1.00------
...............................................................................................................................................................................CCTTTTTTTTTTTTTTTCCTTGG.................................................... 231.000.00--------------------1.00--------
..............................................................................................................................................................................ACCTTTTTTTTTTTTTTTCCAATG.................................................... 241.000.00----------1.00------------------
......................................................................................................................................................CTGCAGAACTGTGAATCA.................................................................................. 181.000.00------------------------1.00----
...................................................................................................................................................TTCCTGCAGAACTGTGAACAGT................................................................................. 221.000.00-----------------------1.00-----
......................................................................................................................................AATGCTAACAATGGC..................................................................................................... 1580.250.25---------------------------0.25-