ID: uc003vgh.2_intron_5_0_chr7_112099074_f.3p
GENE: (6)
chr7:112101721-112101970+


(3)
BRAIN 		(3)
BREAST 		(12)
CELL-LINE 		(2)
HEART 		(1)
HELA 		(1)
LIVER 		(8)
OTHER 		(13)
SKIN 		(2)
XRN.ip

Sense strand
GCAGAGCTTGAGCTGAAACGCACTTCCTTTGATCTTAGTTCAATATTCTTTCTCTCCTCACCTCTTTTATGTATAATGTTTGGGACCTAATATATTATGCTGCTGAGAACATTTTCACGTTGAATTATAAAAGCAGGAAGATGTAGAATTAATAAGAAATAAAATCATTAATGTCTATATATATATATTTTTTTTTTTAGTGTGCAACTTGCTTTGGTGTTTGCTGTTTTATTGCCACAGATGACATTAC
..........................................................................................((((((...(((((.........(((.....))).......)))))...)))))).........................................................................................................
...................................................................................84.........................................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR189782SRR343334SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189787SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................AATATATTATGCTGCTGCTAG.............................................................................................................................................2115.000.0012.003.00-----------------------------------------
....................................................................................ACCTAATATATTATGCTGCTGA................................................................................................................................................2213.003.00---2.00-1.00-------------------------------------
...................................TAGTTCAATATTCTTATAT....................................................................................................................................................................................................193.000.00-3.00-----------------------------------------
...................................................................................................................................AGCAGGAAGATGTAGAATTAATAA...............................................................................................2412.002.00-------------2.00-----------------------------
.....................................................................TGTATAATGTTTGGGACC...................................................................................................................................................................1812.002.00----2.00--------------------------------------
....................................................................................ACCTAATATATTATGCTGCTG.................................................................................................................................................2112.002.001.001.00-----------------------------------------
.............................................................................................................................TATAAAAGCAGGAAGATGTAGAATT....................................................................................................2512.002.00----2.00--------------------------------------
..............................................................................................................................................................................CTATATATATATATTTTTTTTAAG....................................................241.000.00------1.00------------------------------------
..............................................................................................................................................................................CTATATATATATATTTTTTTTTTTTTAA................................................281.000.00-------1.00-----------------------------------
....................................................................................................................................................................TCATTAATGTCTATATATATATA...............................................................2311.001.00-----------------------------------1.00-------
..............................................................................................................................................................................CTATATATATATATTTTTTTTTTAAG..................................................261.000.00------1.00------------------------------------
...................................................................................................................................AGCAGGAAGATGTAGAATTAAT.................................................................................................2211.001.00--------------------1.00----------------------
....................................................TCTCCTCACCTCTTTTATGT..................................................................................................................................................................................2011.001.00---------------------1.00---------------------
..............................................................................................................................................................................CTATATATATATATTTCTAC........................................................201.000.00--------1.00----------------------------------
..............................................................................................................................................................................................................ACTTGCTTTGGTGTTTGCTG........................2011.001.00-----------------------------1.00-------------
........................................................................................................................TGAATTATAAAAGCAGGAAGATGTAG........................................................................................................2611.001.00-------------------------------1.00-----------
..............................................................................................................................................................................................................................GCTGTTTTATTGCCACAGATGACATTAC2811.001.00--------------1.00----------------------------
..............................................................................................................................................................................CTATATATATATATTTTTTTTTTTAATTG...............................................291.000.00------1.00------------------------------------
.......................................TCAATATTCTTTCTCTCCTCACCTCTTATG.....................................................................................................................................................................................301.000.00-------------------1.00-----------------------
........................................................................ATAATGTTTGGGACCTAATA..............................................................................................................................................................2011.001.00-1.00-----------------------------------------
...........................................................................................................................................................................................................................TTTGCTGTTTTATTGCCACAGATGACACT..291.000.00----------------------------------1.00--------
.............................................................................................................................................................................TCTATATATATATATTTTTTTTTAAAG..................................................271.000.00--------1.00----------------------------------
.....................................................................................................................................CAGGAAGATGTAGAATTAATAAGAA............................................................................................2511.001.00------------------1.00------------------------
.............................................................................................................................................................................TCTATATATATATATTCG...........................................................181.000.00--1.00----------------------------------------
.......................................................................................................................TTGAATTATAAAAGCAGGAAGATGTAGA.......................................................................................................2811.001.00----------------1.00--------------------------
...........................................................................................................................ATTATAAAAGCAGGAAGATGTAGAATTA...................................................................................................2811.001.00----------1.00--------------------------------
..................................................................................................................................AAGCAGGAAGATGTAGAATT....................................................................................................2011.001.00-----------1.00-------------------------------
.......................................................................TATAATGTTTGGGACCTAAGA..............................................................................................................................................................211.000.00-------1.00-----------------------------------
.......................................TCAATATTCTTTCTCTCCTCACCTC..........................................................................................................................................................................................2511.001.00--------1.00----------------------------------
...............................................................................................................................TAAAAGCAGGAAGATGTAGAATTAAT.................................................................................................2611.001.00--------------------------------1.00----------
...........................................................................................................................................................................................................................TTTGCTGTTTTATTGCCACAGATGACATTAC3111.001.00------------------------1.00------------------
......................................................................................................................................AGGAAGATGTAGAATTAATAAGA.............................................................................................2311.001.00----------------------1.00--------------------
..........................................................................................................................AATTATAAAAGCAGGAAGATG...........................................................................................................2111.001.00-------------------------------------1.00-----
............................................................................................................................................................................................................CAACTTGCTTTGGTGTTTGCTG........................2211.001.00--1.00----------------------------------------
.................................................................................................................................................................................TATATATATATTTTTTTTTTTATTCC...............................................261.000.00------------1.00------------------------------
.................................................................................................................................................................................TATATATATATTTTTTTTTTTATACC...............................................261.000.00------------1.00------------------------------
...........................................................................................................AACATTTTCACGTTGAATTATAAAAG.....................................................................................................................2611.001.001.00------------------------------------------
..............................................................................................................................ATAAAAGCAGGAAGATGTAGAATTAATAAGAAA...........................................................................................3311.001.00---------------------------------------1.00---
..................................................................................................................................AAGCAGGAAGATGTAGAAT.....................................................................................................1911.001.00-----------------------1.00-------------------
........................................................................................AATATATTATGCTGCTGCGAG.............................................................................................................................................211.000.001.00------------------------------------------
.............................................................................................................................................................................TCTATATATATATATTCGTA.........................................................201.000.00--1.00----------------------------------------
..................................................................................................................................AAGCAGGAAGATGTAGAATTA...................................................................................................2111.001.00---------1.00---------------------------------
.......................................................................................................................................................................................TATATTTTTTTTTTTATTG................................................191.000.00------1.00------------------------------------
.............................................................................................................................................................................TCTATATATATATATTTGCG.........................................................201.000.00--1.00----------------------------------------
..........................................................................................................................AATTATAAAAGCAGGAAGATGTAG........................................................................................................2411.001.00---------1.00---------------------------------
..............................................................................................TTATGCTGCTGAGAACATTTTCACGCTG................................................................................................................................281.000.00------------------------------1.00------------
....................................................................................................................................GCAGGAAGATGTAGAATTAATAAGAA............................................................................................2611.001.00------------------------------------1.00------
........................................................................................................................................GAAGATGTAGAATTAATAAGA.............................................................................................2111.001.00---------------------------1.00---------------
...........................................................................ATGTTTGGGACCTAATATATTA.........................................................................................................................................................2211.001.00-----------1.00-------------------------------
....................................................................................ACCTAATATATTATGCTGCTGAG...............................................................................................................................................2311.001.00---------------1.00---------------------------
..................................................................................................................................................................AATCATTAATGTCTATATATATA.................................................................2311.001.00---------------------------------1.00---------
............................................................................................................................TTATAAAAGCAGGAAGATGTAGAATTA...................................................................................................2711.001.00----------1.00--------------------------------
........................................................................................AATATATTATGCTGCTTTTT..............................................................................................................................................201.000.00--1.00----------------------------------------
..............................................................................................................................ATAAAAGCAGGAAGATGTAGAATTA...................................................................................................2511.001.00--------------------------------------1.00----
......................................................................................................................................AGGAAGATGTAGAATTAATAAGAAA...........................................................................................2511.001.00-----------------1.00-------------------------
....................CACTTCCTTTGATCTT......................................................................................................................................................................................................................1620.500.50--------------0.50----------------------------
.........................................................................................ATATATTATGCTGCTGCTAG.............................................................................................................................................2050.200.200.20------------------------------------------
.........................................................................................ATATATTATGCTGCTG.................................................................................................................................................1650.200.20---------------0.20---------------------------
............................................................................................................................................ATGTAGAATTAATAAG..............................................................................................1660.170.17---------0.17---------------------------------
....................................................................................................................................GCAGGAAGATGTAGA.......................................................................................................1580.120.12-----------------------------------------0.12-
...................................................................................................................................AGCAGGAAGATGTAG........................................................................................................1590.110.11------------------------------------------0.11
..........................................................................................................................AATTATAAAAGCAGGA................................................................................................................1690.110.11----------------0.11--------------------------

Antisense strand
GCAGAGCTTGAGCTGAAACGCACTTCCTTTGATCTTAGTTCAATATTCTTTCTCTCCTCACCTCTTTTATGTATAATGTTTGGGACCTAATATATTATGCTGCTGAGAACATTTTCACGTTGAATTATAAAAGCAGGAAGATGTAGAATTAATAAGAAATAAAATCATTAATGTCTATATATATATATTTTTTTTTTTAGTGTGCAACTTGCTTTGGTGTTTGCTGTTTTATTGCCACAGATGACATTAC
..........................................................................................((((((...(((((.........(((.....))).......)))))...)))))).........................................................................................................
...................................................................................84.........................................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR189782SRR343334SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189787SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................AAAAGCAGGAAGATGTCAAG...................................................................................................... 205.000.00---2.00-2.00-------------------1.00-----------------
................................................................................................................................AAAAGCAGGAAGATGTC......................................................................................................... 172.000.00---1.00-1.00-------------------------------------
...............................................................................................................TTTTCACGTTGAATTATAAGGA..................................................................................................................... 221.000.00--1.00----------------------------------------
............................................................................................................................................................................GTCTATATATATATATTTTG.......................................................... 201.000.00--1.00----------------------------------------
..........................................................................................................................................................................................ATTTTTTTTTTTAGTGTGCCC........................................... 211.000.00--------------------------1.00----------------
...............AAACGCACTTCCTTTGACA........................................................................................................................................................................................................................ 191.000.00-------1.00-----------------------------------
................................................................................................................................AAAAGCAGGAAGATGTCA........................................................................................................ 181.000.00---1.00---------------------------------------
......................CTTCCTTTGATCTTAGTA.................................................................................................................................................................................................................. 181.000.00----------------------------------------1.00--
...................................................................................................................................................................................TATATATATTTTTTTTTTTAGATG............................................... 241.000.001.00------------------------------------------