ID: uc003vdo.2_intron_1_0_chr7_105733584_r.3p
GENE: (3)
chr7:105733534-105733783-


(3)
B-CELL 		(3)
BREAST 		(9)
CELL-LINE 		(4)
CERVIX 		(2)
HEART 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(16)
SKIN 		(1)
XRN.ip

Sense strand
ACTGTTGTAACTCAGGCACTGTGCTTGTAACACTAACAGCAATGTTTACTATGCTGACTGACTTTTTTAATAAAGTATATCATGAAGGCCATTTCTCAGCACCATAAGGTTGAATGTAATCTCAGTTTCTTCATCATGGATTTGAAATTTAGTATTAAAATTAACTGTTCATTATTAACTCTTACTGATTTTTGCTTTAGGACTTTGTTGTTACACTTGTTGCCACTTTTTTGTGGTTGGTGAGCACTTC
...................................................((((((...(((((......))))).......((((....))))))))))......((((((...((((((.((((((.((......))...)))))).)).))))...))))))..................((((........))))..................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................................................................CTTACTGATTTTTGCTTTAGA.................................................21126.009.0010.0011.00--3.00----1.00-----1.00---------------------------
...................................................................................................................................................................................TCTTACTGATTTTTGCTTTAGA.................................................2219.004.005.00-------1.00---1.00----------------1.00------1.00------
....................................................................................................................................................................................CTTACTGATTTTTGCTTTAG..................................................2019.009.001.00--1.00--2.00---------1.00--1.00-------1.001.00-----1.00--------
...................................................................................................................................................................................TCTTACTGATTTTTGCTTTAG..................................................2114.004.00------1.00-1.00-----------------1.00---1.00------------
...............................................................................................................................................................................TAACTCTTACTGATTTTTGCTTTAG..................................................2513.003.00---3.00---------------------------------------
..............................................................................................................................................................................TTAACTCTTACTGATATG..........................................................183.000.00--3.00----------------------------------------
..................................................................................................................................................................................CTCTTACTGATTTTTGCTTTAG..................................................2212.002.00------------------1.00------------------1.00-----
.................................................................................................................................................................................................................................CTTTTTTGTGGTTGGTCCG......192.000.00-----1.00--------------1.00----------------------
..........................................................................................................................................................................ATTATTAACTCTTACGTAA.............................................................191.000.00----------------------1.00--------------------
........................................................................................................................................................................................................................................GTGGTTGGTGAGCACTTC1821.001.00-------------------------1.00-----------------
...................................................................................................................................................................................................................TACACTTGTTGCCACTTT.....................1811.001.00-------------------------------1.00-----------
.................................................................................................................................................................................................................................CTTTTTTGTGGTTGGGACG......191.000.00-----1.00-------------------------------------
....................................................................................................................................................................................CTTACTGATTTTTGCTTTAGAA................................................2211.009.001.00------------------------------------------
...............................................................................................................................................................................TAACTCTTACTGATTTTTGCTTTA...................................................2411.001.00---------------------1.00---------------------
.................................................................................................................................................................................................................................CTTTTTTGTGGTTGGTCAG......191.000.00-----1.00-------------------------------------
....................................................................................................................................................................................CTTACTGATTTTTGCTTTAGC.................................................2111.009.00---------------------------------1.00---------
....................................................................................................................................................................................CTTACTGATTTTTGCTTTAGT.................................................2111.009.001.00------------------------------------------
................................................................................................................................................................................AACTCTTACTGATTTTTGCTTTAG..................................................2411.001.00--------------------------------------1.00----
.........................................................................................................................................................................................................................TGTTGCCACTTTTTTGTGGTTGGTG........2511.001.00----------1.00--------------------------------
..............................................................................................................................................................................................TTTGCTTTAGGACTTTGTTGTTA.....................................2311.001.00-----------1.00-------------------------------
.....................................................CTGACTGACTTTTTTGTT...................................................................................................................................................................................181.000.00-------------1.00-----------------------------
...............................................................................................................................................................................TAACTCTTACTGATTTTTGCTTTAGA.................................................2611.003.001.00------------------------------------------
.................................................................................................................................................................................................................................CTTTTTTGTGGTTGGTGA.......1811.001.00-----------------------------------1.00-------
..................................................................................................................................................................................CTCTTACTGATTTTTGCTTTAGA.................................................2311.002.00--------------1.00----------------------------
..................................................ATGCTGACTGACTTTTT.......................................................................................................................................................................................1711.001.00--------------------------------1.00----------
....................................................................................................................................................................................................................................TTTTGTGGTTGGTGAGCACTT.2111.001.00-----------------------1.00-------------------
...............................................................................................................................TCTTCATCATGGATTTGAA........................................................................................................1911.001.00------------------------1.00------------------
...................................................................................................................................................................................TCTTACTGATTTTTGCTT.....................................................1811.001.00-----------------1.00-------------------------
.....................................................................................................................................................................................................................................TTTGTGGTTGGTGAGCA....1730.330.33-----------------------------------------0.33-
.....................................................................................................................................................................................................................................TTTGTGGTTGGTGAGC.....1640.250.25---------0.25---------------------------------
....................................................................................................................................................................................................................ACACTTGTTGCCACT.......................1550.200.20------------------------------------------0.20

Antisense strand
ACTGTTGTAACTCAGGCACTGTGCTTGTAACACTAACAGCAATGTTTACTATGCTGACTGACTTTTTTAATAAAGTATATCATGAAGGCCATTTCTCAGCACCATAAGGTTGAATGTAATCTCAGTTTCTTCATCATGGATTTGAAATTTAGTATTAAAATTAACTGTTCATTATTAACTCTTACTGATTTTTGCTTTAGGACTTTGTTGTTACACTTGTTGCCACTTTTTTGTGGTTGGTGAGCACTTC
...................................................((((((...(((((......))))).......((((....))))))))))......((((((...((((((.((((((.((......))...)))))).)).))))...))))))..................((((........))))..................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
............................................................ACTTTTTTAATAAAGTATTTCT........................................................................................................................................................................ 221.000.00---------------------------------------1.00---
........................................................................................................................CTCAGTTTCTTCATCATGGATTC........................................................................................................... 231.000.00-------1.00-----------------------------------
..................................................................................................................................................................................................................................TTTTTTGTGGTTGGTCA....... 171.000.00----------------------------------------1.00--
.......................................................................................................................AATCCATGATGAAGAAACTGAGA............................................................................................................ 2311.001.00-------1.00-----------------------------------
..................................................................................................................TGTAATCTCAGTTTCTATAG.................................................................................................................... 201.000.00--1.00----------------------------------------