ID: uc003vda.1_intron_12_0_chr7_105205905_f
GENE: RINT1(13)
chr7:105205855-105206026+


(1)
AGO2.ip 		(1)
B-CELL 		(1)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(9)
HELA 		(3)
LIVER 		(3)
SKIN 		(1)
XRN.ip

Sense strand
TTTTCTGGCAAATGCTTGTAGAGAAGCTGGATGTATACATCTACCAAGAAGTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAGATAATTCTTGCTAATCACTTCAATGAAGGAGGAGCAGCCCAGCTGCAGTT
.......................................................(((((((.....)))))))..(((....((((((((.....(((.....)))...)))))))).)))..................................................
..................................................51.......................................................................124..............................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR040016(GSM532901)
G645N. (cervix)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR040036(GSM532921)
G243N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAG..................................................721486.00486.00144.00310.0016.009.006.00-----------1.00------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTC....................................................70162.0062.0059.00--3.00-------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAGT.................................................73153.00486.0052.00--1.00-------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCA...................................................71141.0041.0039.00--2.00-------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAGAA................................................7434.000.005.0028.00--1.00------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAGAAAT..............................................7612.000.0012.00----------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTATT......................................................6810.000.0010.00----------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATT.............................................................61110.0010.00-10.00---------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAGAAT...............................................759.000.009.00----------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTT....................................................7019.002.009.00----------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATA......................................................................5218.008.008.00----------------------------
...................................................TAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCA...................................................7018.008.005.003.00---------------------------
....................................................AAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAG..................................................7016.006.00-6.00---------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAGAAA...............................................756.000.006.00----------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCT...........................................................6315.005.00-5.00---------------------------
...................................................TAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAG..................................................7114.004.003.00---1.00------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAGTT................................................7414.00486.004.00----------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACT............................................................................4613.003.002.001.00---------------------------
..............................................................................................................................................CAATGAAGGAGGAGCAGCCCAGCT......2412.002.00-------2.00---------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTTTTT.................................................7312.002.00--2.00--------------------------
................TGTAGAGAAGCTGGATGTATACATCT..................................................................................................................................2612.002.00-----2.00-----------------------
.......................................................................................................................................................AGGAGCAGCCCAGCTGGTTA.202.000.00------2.00----------------------
.................................................AGTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAG..................................................7312.002.00-2.00---------------------------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTT.....................................................6912.002.002.00----------------------------
...................................................................................................................................................AAGGAGGAGCAGCCCTCT.......181.000.00------------------1.00----------
................TGTAGAGAAGCTGGATGTATACA.....................................................................................................................................2311.001.00-----------------1.00-----------
.......................................................................................................................................ATCACTTCAATGAAGGAGGAGC...............2211.001.00-----------1.00-----------------
.........................................................................................................ATTATTCTTTGTTTCAAGAG...............................................201.000.00-------------------1.00---------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGC...............................................................................................2711.001.00--------1.00--------------------
..........AATGCTTGTAGAGAAGCTGGATGTATAC......................................................................................................................................2811.001.00------------1.00----------------
................................................................................................................................................ATGAAGGAGGAGCAGCCCAGACGC....241.000.00---------1.00-------------------
........................................................AAGAATAGACTGTTTTTGGGCT..............................................................................................2211.001.00-------------1.00---------------
...................................................................................................................................................AAGGAGGAGCAGCCCAGCTGCAGTCTG271.000.00--------------------------1.00--
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCGGT.................................................7311.0062.001.00----------------------------
.................GTAGAGAAGCTGGATGTATG.......................................................................................................................................201.000.00--------1.00--------------------
..TTCTGGCAAATGCTTGTAGAGAAGCT................................................................................................................................................2611.001.00--------------1.00--------------
...................................................................................................................................................AAGGAGGAGCAGCCCAGCT......1911.001.00-------------------------1.00---
.......................................................TAAGAATAGACTGTTCAGA..................................................................................................191.000.00----------------------1.00------
....................GAGAAGCTGGATGTAAAGG.....................................................................................................................................191.000.00-----1.00-----------------------
.....................AGAAGCTGGATGTATACAT....................................................................................................................................1911.001.00---------------------1.00-------
...................AGAGAAGCTGGATGTATACATCTACCAAGA...........................................................................................................................3011.001.00----------1.00------------------
.........................................................AGAATAGACTGTTTTTGGGCTGTGACA........................................................................................271.000.00---------1.00-------------------
...................................................................................................................................................AAGGAGGAGCAGCCCGAG.......181.000.00------------------------1.00----
...............TTGTAGAGAAGCTGGATGTATACATCTAC................................................................................................................................2911.001.00-----1.00-----------------------
.......GCAAATGCTTGTAGAGAAGCTGG..............................................................................................................................................2311.001.00--------------------1.00--------
..................................................GTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAGCAT...............................................7511.00486.001.00----------------------------
...................................................TAAGTAAGAATAGACTGT.......................................................................................................1820.500.50---------------------------0.50-
................TGTAGAGAAGCTGGATG...........................................................................................................................................1730.330.33------0.33----------------------
.................GTAGAGAAGCTGGATG...........................................................................................................................................1650.200.20----------------------------0.20

Antisense strand
TTTTCTGGCAAATGCTTGTAGAGAAGCTGGATGTATACATCTACCAAGAAGTAAGTAAGAATAGACTGTTTTTGGGCTGTGATAATAAAGACAACTGTTATATGAATTATTCTTTGTTTCAGATAATTCTTGCTAATCACTTCAATGAAGGAGGAGCAGCCCAGCTGCAGTT
.......................................................(((((((.....)))))))..(((....((((((((.....(((.....)))...)))))))).)))..................................................
..................................................51.......................................................................124..............................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR040016(GSM532901)
G645N. (cervix)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR040036(GSM532921)
G243N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................AAGGAGGAGCAGCCCAGGAGT.... 211.000.00---------------1.00-------------
..TTCTGGCAAATGCTTTGTT....................................................................................................................................................... 191.000.00-----------------------1.00-----