ID: uc003uyg.1_intron_3_0_chr7_100877724_r.3p
GENE: (1)
chr7:100877674-100877923-


(1)
AGO1.ip
(3)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(4)
BREAST
(17)
CELL-LINE
(5)
CERVIX
(1)
HEART
(1)
HELA
(2)
LIVER
(2)
OTHER
(8)
SKIN
(1)
XRN.ip

Sense strand
CCAGCCTGGACAACATGGTGAAACCCTGTCTCTACTAAAAACAGAAAAATTAGCCGGGCGTGGTGGTGCGTGTCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGATGGTGAGGGGCTGTTGGGCTGGCTCCGTCGCAGAGGGGAGATGGGAAAGGCTGACAACTGTGCCCACCCCCAGGGTATATTCAGGCCTGCCGGGCACTCATGATCACCGCCATCCTCCTGGGC
.............................................................((((((...(((((((..((((((...))))))..))..))))).....))))))...(((......)))....((.((((((.((...((((((..........))))))..)).)))))).))................................................................
.............................................................62...........................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR040010(GSM532895)
G529N. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532883(GSM532883)
G871N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR029128(GSM416757)
H520. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577743(Rovira)
total RNA. (breast)
.....................................................................................................................................GGGGCTGTTGGGCTGGCTCCGTCGCAGAGGGGAGATGGGAAAGGCTGACAACTGTGCCCACCCCCA...................................................6618.008.00----8.00--------------------------------------
..................................................................TGCGTGTCTGTAATCCCAAAA...................................................................................................................................................................214.000.00-----4.00-------------------------------------
.......................................................................................ACTGGGGAGGCTGAGGCAGGAGAATCACTCGG...................................................................................................................................322.000.002.00------------------------------------------
......................................................CGGGCGTGGTGGTGCTCTG.................................................................................................................................................................................192.000.00--------------1.00-------------------------1.00--
......................................................CGGGCGTGGTGGTGCGGGA.................................................................................................................................................................................191.000.00-------------------1.00-----------------------
.....................................................CCGGGCGTGGTGGTGCTCTG.................................................................................................................................................................................201.000.00-------------1.00-----------------------------
..............................................................................ATCCCAGCTACTGGGGAGGCGAGG....................................................................................................................................................241.000.00-1.00-----------------------------------------
.............................................................................AATCCCAGCTACTGGGGGCGG........................................................................................................................................................211.000.00-----------1.00-------------------------------
.......................................................................................ACTGGGGAGGCTGAGGCAGGAGTTT..........................................................................................................................................251.000.00----------------------------1.00--------------
.......................................................................................ACTGGGGAGGCTGAGGCAGGCTC............................................................................................................................................231.000.00-1.00-----------------------------------------
.................................................................................CCAGCTACTGGGGAGGCTGAGGGCA................................................................................................................................................251.000.00--------1.00----------------------------------
....................................................GCCGGGCGTGGTGGTGCGCCA.................................................................................................................................................................................211.000.00----------------------1.00--------------------
...............................................................................................................................................................GAGGGGAGATGGGAAAGGCTGAAA...................................................................241.000.00----------1.00--------------------------------
..................................................TAGCCGGGCGTGGTGGTGCTTTT.................................................................................................................................................................................231.000.00----------------1.00--------------------------
..............ATGGTGAAACCCTGTCTCTACTAAAAACGCG.............................................................................................................................................................................................................311.000.00-1.00-----------------------------------------
...............................................................................................................................................................................................CACCCCCAGGGTATACG..........................................171.000.00------------------------------------------1.00
...................................................................................................................................GAGGGGCTGTTGGGCTGTGAG..................................................................................................211.000.00---------------------------------------1.00---
............................................................................TAATCCCAGCTACTGGGGAGGCGAG.....................................................................................................................................................251.000.00--1.00----------------------------------------
........................................................................TCTGTAATCCCAGCTACGC...............................................................................................................................................................191.000.00------------------------1.00------------------
........................................................................................................................CCTGGGATGGTGAGGGGCTGTTGG..........................................................................................................2411.001.00------1.00------------------------------------
........................................................................................CTGGGGAGGCTGAGGCAGGAGAATAAA.......................................................................................................................................271.000.00-------------------------1.00-----------------
....................................................GCCGGGCGTGGTGGTGCGTTC.................................................................................................................................................................................211.000.00--------------------------1.00----------------
..............................................................................................................................................................................AGGCTGACAACTGTGCCCACCCCCAGGGC...............................................291.000.001.00------------------------------------------
...........................................................................GTAATCCCAGCTACTGGGGAGGCTGAG....................................................................................................................................................2701.001.00---------------------------------1.00---------
.....................................................................................CTACTGGGGAGGCTGAGGCAGGAGAAATT........................................................................................................................................291.000.00--------------------------------------1.00----
........................................................................................................AGGAGAATCACTTGAACCTGGGCGAA........................................................................................................................261.000.00------------------1.00------------------------
...............................................................................................................................................................GAGGGGAGATGGGAAAGGCTGACA...................................................................2411.001.00----------1.00--------------------------------
....CCTGGACAACATGGTGAAACCCTGTCTTACC.......................................................................................................................................................................................................................311.000.001.00------------------------------------------
...........................................................................................................AGAATCACTTGAACCTGGGCTAA........................................................................................................................231.000.00---------1.00---------------------------------
............................TCTCTACTAAAAACAGAAAATAAG......................................................................................................................................................................................................241.000.00----------------------------------1.00--------
..........................................................................................GGGGAGGCTGAGGCAGGAGAATCA........................................................................................................................................2401.001.00-----------------------------------------1.00-
......................................................CGGGCGTGGTGGTGCGGGG.................................................................................................................................................................................191.000.00-------------------------------1.00-----------
......................................................CGGGCGTGGTGGTGCGGA..................................................................................................................................................................................181.000.00---------1.00---------------------------------
.....................................................................................CTACTGGGGAGGCTGAGGCAGGAGAAACGA.......................................................................................................................................301.000.00-1.00-----------------------------------------
......TGGACAACATGGTGAAACCC................................................................................................................................................................................................................................2001.001.00-------1.00-----------------------------------
..........................................................................................GGGGAGGCTGAGGCAGGTGCA...........................................................................................................................................211.000.00------1.00------------------------------------
..................................................................................................................................................TGGCTCCGTCGCAGACT.......................................................................................171.000.00-----------------------------------1.00-------
.........................................................................................................GGAGAATCACTTGAACCTGGGCTT.........................................................................................................................241.000.00------1.00------------------------------------
................................................ATTAGCCGGGCGTGGTGGAAGT....................................................................................................................................................................................221.000.00-1.00-----------------------------------------
................................................ATTAGCCGGGCGTGGTGGTGCGCGAC................................................................................................................................................................................261.000.00-1.00-----------------------------------------
.........................................................................................TGGGGAGGCTGAGGCAGGAGAAAGCC.......................................................................................................................................261.000.00-1.00-----------------------------------------
...........................................................................GTAATCCCAGCTACTGGGGAGGCTGA.....................................................................................................................................................2601.001.00-------1.00-----------------------------------
.......................................................................................ACTGGGGAGGCTGAGGCAGGTT.............................................................................................................................................221.000.001.00------------------------------------------
........................................ACAGAAAAATTAGCCGGGCACGG...........................................................................................................................................................................................231.000.00-1.00-----------------------------------------
..................................................TAGCCGGGCGTGGTGGTGCGTGTCTG..............................................................................................................................................................................2660.170.17-0.17-----------------------------------------
...................................................AGCCGGGCGTGGTGGTGCGTGTCTG..............................................................................................................................................................................2560.170.170.17------------------------------------------
....................................................GCCGGGCGTGGTGGTGCGTGT.................................................................................................................................................................................2170.140.14-----------0.14-------------------------------

Antisense strand
CCAGCCTGGACAACATGGTGAAACCCTGTCTCTACTAAAAACAGAAAAATTAGCCGGGCGTGGTGGTGCGTGTCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGATGGTGAGGGGCTGTTGGGCTGGCTCCGTCGCAGAGGGGAGATGGGAAAGGCTGACAACTGTGCCCACCCCCAGGGTATATTCAGGCCTGCCGGGCACTCATGATCACCGCCATCCTCCTGGGC
.............................................................((((((...(((((((..((((((...))))))..))..))))).....))))))...(((......)))....((.((((((.((...((((((..........))))))..)).)))))).))................................................................
.............................................................62...........................................................................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR040010(GSM532895)
G529N. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532883(GSM532883)
G871N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR029128(GSM416757)
H520. (cell line)
SRR040007(GSM532892)
G601T. (cervix)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577743(Rovira)
total RNA. (breast)
....................AAACCCTGTCTCTACTAAAAGA................................................................................................................................................................................................................ 223.000.00---3.00---------------------------------------
....................AAACCCTGTCTCTACTAAAAG................................................................................................................................................................................................................. 213.000.00---3.00---------------------------------------
....................AAACCCTGTCTCTACTAGAA.................................................................................................................................................................................................................. 203.000.00---3.00---------------------------------------
.......................................AACAGAAAAATTAGCCGGC................................................................................................................................................................................................ 192.000.00--2.00----------------------------------------
.........................................................................................TGGGGAGGCTGAGGCAGGAGAATCAGG...................................................................................................................................... 272.000.002.00------------------------------------------
.CAGCCTGGACAACATGGTGAAACCCTGTCTTCC........................................................................................................................................................................................................................ 332.000.002.00------------------------------------------
................................................ATTAGCCGGGCGTGGTGGTCTC.................................................................................................................................................................................... 222.000.00--2.00----------------------------------------
....................AAACCCTGTCTCTACTAAAAAAACC............................................................................................................................................................................................................. 252.000.00-------2.00-----------------------------------
....................................................................................GCTACTGGGGAGGCTGAGGCAGGAGAACCGG....................................................................................................................................... 311.000.00-1.00-----------------------------------------
........................................................GGCGTGGTGGTGCGTGTCTGTGGC.......................................................................................................................................................................... 241.000.00-1.00-----------------------------------------
..........................................................................................GGGGAGGCTGAGGCAGGAGAATGGC....................................................................................................................................... 251.000.001.00------------------------------------------
......TGGACAACATGGTGAAACTACG.............................................................................................................................................................................................................................. 221.000.00-----------------------1.00-------------------
........................................................................TCTGTAATCCCAGCTACTGAAC............................................................................................................................................................ 221.000.00-------------------------------------1.00-----
........................................................GGCGTGGTGGTGCGTGTCTGGCC........................................................................................................................................................................... 231.000.001.00------------------------------------------
................GGTGAAACCCTGTCTCTACTAAAAACAGCGT........................................................................................................................................................................................................... 311.000.00-1.00-----------------------------------------
.......................................................GGGCGTGGTGGTGCGTGTCTGTAACA......................................................................................................................................................................... 261.000.001.00------------------------------------------
.........................................CAGAAAAATTAGCCGGGCGTGGTGGTGC..................................................................................................................................................................................... 281.000.00--1.00----------------------------------------
........................................................................TCTGTAATCCCAGCTACTGAAA............................................................................................................................................................ 221.000.00------------1.00------------------------------
.CAGCCTGGACAACATGGTGAAACCCTGTCTCTATAC..................................................................................................................................................................................................................... 361.000.00---------------------------1.00---------------
...............................................................TGGTGCGTGTCTGTAATCCCAGCTATCAG.............................................................................................................................................................. 291.000.00-1.00-----------------------------------------
..........................................................................................GGGGAGGCTGAGGCAGGAGCCTC......................................................................................................................................... 231.000.00--------1.00----------------------------------
......................ACCCTGTCTCTACTAAGA.................................................................................................................................................................................................................. 181.000.00------------------------------------1.00------
....................................................................................................AGGCAGGAGAATCACTTGAACAAAA............................................................................................................................. 251.000.00--------------------------------1.00----------
........................CCTGTCTCTACTAAAAACACTTC........................................................................................................................................................................................................... 231.000.00-1.00-----------------------------------------
...................................................................................AGCTACTGGGGAGGCTGAGGCAGGTC............................................................................................................................................. 261.000.00--------1.00----------------------------------
.........................................................................................................................................................................................TGTGCCCACCCCCAGGTTTG............................................. 201.000.00------------------------------1.00------------
..GGGTTTCACCATGTTGTCCAGGCT................................................................................................................................................................................................................................ 2401.001.00---------------1.00---------------------------
........................................................GGCGTGGTGGTGCGTGTCTGGC............................................................................................................................................................................ 221.000.00-1.00-----------------------------------------
....................AAACCCTGTCTCTACTAAAAACAGAAAAAGCC...................................................................................................................................................................................................... 321.000.001.00------------------------------------------
....................................................................................................AGGCAGGAGAATCACTTGAAAA................................................................................................................................ 221.000.00-----------------1.00-------------------------
..............................................................................................................................................GGGCTGGCTCCGTCGCC........................................................................................... 171.000.00--------------------1.00----------------------
.......................................................GGGCGTGGTGGTGCGTGTCTGTAGCG......................................................................................................................................................................... 261.000.001.00------------------------------------------
.................................................TTAGCCGGGCGTGGTGGTGCTC................................................................................................................................................................................... 221.000.001.00------------------------------------------
..AGCCTGGACAACATGGTGAAACCCTGTCTCTCC....................................................................................................................................................................................................................... 331.000.00-1.00-----------------------------------------
..AGCCTGGACAACATGGTGAAACCCTATC............................................................................................................................................................................................................................ 281.000.00------1.00------------------------------------
....................................................GCCGGGCGTGGTGGTGCGTGCT................................................................................................................................................................................ 221.000.00--1.00----------------------------------------
...............................................AATTAGCCGGGCGTGGTGGTGCGTGCTTG.............................................................................................................................................................................. 291.000.00--1.00----------------------------------------
..........................................................................TGTAATCCCAGCTACTGTAAG........................................................................................................................................................... 211.000.00---------------------1.00---------------------
......................ACCCTGTCTCTACTAAAAACAGCC............................................................................................................................................................................................................ 241.000.001.00------------------------------------------
...............................................AATTAGCCGGGCGTGGTGGTGCC.................................................................................................................................................................................... 231.000.00--1.00----------------------------------------
......TGGACAACATGGTGAAACCCTT.............................................................................................................................................................................................................................. 2201.000.00-----------------------------1.00-------------
...................................................ACAGACACGCACCACCACGCCCGGCT............................................................................................................................................................................. 2660.170.17-0.17-----------------------------------------
...............................................ACACGCACCACCACGCCCGGCTAATT................................................................................................................................................................................. 2660.170.17--0.17----------------------------------------
...................................................TACAGACACGCACCACCACGCCCGGCT............................................................................................................................................................................ 2760.170.170.17------------------------------------------
....................................................ACAGACACGCACCACCACGCCCGGC............................................................................................................................................................................. 2560.170.170.17------------------------------------------