ID: uc003uwm.1_intron_4_0_chr7_100405203_r.3p
GENE: EPHB4(11)
chr7:100405153-100405402-


(2)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(3)
BREAST
(22)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(7)
SKIN

Sense strand
GGCACATGCCTATTGTTCCAGCTACTCAGGAGGCTTGCCTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCTATGATGGCACCACTGCACTCCAGCCTGGGCGACAGAACAAGACCCTGTCTCTAAAAAAAAAAGATGTGGATGGGAGGGGGAACGGTGGGTGGGCTGTCCTCACCAAGCCCCCACCCTATCTGCTCTCCAGCTAAACGACGGACAGTTCACAGTCATCCAGCTCGTGGGCATGCTGCGGGG
............................................................................((.(((..((......)).)))))............((((.((((....................)))).))))....................................................................................................
....................................................................69...............................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM956925PAZD5SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577580(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189786SRR189785SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................ATGGCACCACTGCACTCCAGCCGAG........................................................................................................................................................254.000.003.001.00---------------------------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCGAGC.......................................................................................................................................................264.000.002.002.00---------------------------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCGTG........................................................................................................................................................253.000.002.001.00---------------------------------------------
...........................................................................................................................................................................................................................CAGTCATCCAGCTCGTGGG............1913.003.00------3.00----------------------------------------
................................................................................................................................AAAAGATGTGGATGGAGT........................................................................................................183.000.00------------1.001.00------1.00--------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCGTGC.......................................................................................................................................................263.000.003.00----------------------------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCAGGC.......................................................................................................................................................262.000.00-2.00---------------------------------------------
..........................................................................TGGCACCACTGCACTCCAGCCGGAC.......................................................................................................................................................252.000.001.001.00---------------------------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCGGC........................................................................................................................................................252.000.001.001.00---------------------------------------------
..........................................................................TGGCACCACTGCACTCCAGCATC.........................................................................................................................................................232.000.00---------------2.00-------------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCTGCGAC.....................................................................................................................................................282.000.002.00----------------------------------------------
...............................................................................................................................AAAAAGATGTGGATGGAGTA.......................................................................................................202.000.00-----------------1.00-------------------1.00---------
..............................................................................................................................................................................................................................TCATCCAGCTCGTGGGCATG........2012.002.00----------2.00------------------------------------
..........................................................................TGGCACCACTGCACTCCAGCCGAGC.......................................................................................................................................................251.000.001.00----------------------------------------------
................................................GAGGTTGAGGCTGCAGTGGGGA....................................................................................................................................................................................221.000.00---------------------------------------1.00-------
.........................................AGCCCAGGAGGTTGAGGCTGCAGTTT.......................................................................................................................................................................................261.000.00-----------------1.00-----------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCGGAC.......................................................................................................................................................261.000.001.00----------------------------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCGGGT.......................................................................................................................................................261.000.001.00----------------------------------------------
.......................................................AGGCTGCAGTGAGCTATGAATAG............................................................................................................................................................................231.000.00------------------------------1.00----------------
.................................................................................................................................................................................CCCCCACCCTATCTGCTCT......................................................1911.001.00---------------------1.00-------------------------
..................................................................................................................................................................................CCCCACCCTATCTGCTCTCCAG..................................................2211.001.00-----------------------------------1.00-----------
.........................................AGCCCAGGAGGTTGAGGCTGGGGA.........................................................................................................................................................................................241.000.00-------1.00---------------------------------------
..................................................................................................................................................................................CCCCACCCTATCTGCTCTCCAGA.................................................2311.001.00---------------------------------1.00-------------
..........................................................................................................................................................................................................................................TGGGCATGCTGCGGGCGTC191.000.00----------------------1.00------------------------
...........................................CCCAGGAGGTTGAGGCTGCAGTGAGCGGGC.................................................................................................................................................................................301.000.00-1.00---------------------------------------------
..............................................AGGAGGTTGAGGCTGCAGTCTGC.....................................................................................................................................................................................231.000.00-------------------------1.00---------------------
...................................................GTTGAGGCTGCAGTGAGCTATG.................................................................................................................................................................................2201.001.00----------------1.00------------------------------
..................................................................................................................................................................................................................................CCAGCTCGTGGGCATGCTGCGGG.2311.001.00------------------------------------1.00----------
................................................................................................................................AAAAGATGTGGATGGTGT........................................................................................................181.000.00-------------1.00---------------------------------
.............................................................................................................................................................................................................CGACGGACAGTTCACAGTCATCCAGCT..................2711.001.00--------------------------------------1.00--------
...........................................................................................AGCCTGGGCGACAGAACAAGACGCGC.....................................................................................................................................261.000.001.00----------------------------------------------
.......................................TGAGCCCAGGAGGTTGAGGCCGCC...........................................................................................................................................................................................241.000.001.00----------------------------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCGCGC.......................................................................................................................................................261.000.001.00----------------------------------------------
.........................................AGCCCAGGAGGTTGAGGCTGCAGTGTTA.....................................................................................................................................................................................281.000.00--------------------------1.00--------------------
......................................................................................ACTCCAGCCTGGGCGACAGAACTCGG..........................................................................................................................................261.000.00---------------------------1.00-------------------
..............................................AGGAGGTTGAGGCTGCAGTGTAA.....................................................................................................................................................................................231.000.00------------1.00----------------------------------
.........................................AGCCCAGGAGGTTGAGGCTGCAGCGGA......................................................................................................................................................................................271.000.001.00----------------------------------------------
...................................................................................................................................AGATGTGGATGGGAGGGGGTT..................................................................................................211.000.00------------------------------------------1.00----
...............................................................................................TGGGCGACAGAACAAGAC.........................................................................................................................................1801.001.00-----------1.00-----------------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCTCGCG......................................................................................................................................................271.000.001.00----------------------------------------------
.......................................................................TGATGGCACCACTGCACTCCAGCTCGA........................................................................................................................................................271.000.00-1.00---------------------------------------------
........................................................................................................................................................................................................CTAAACGACGGACAGT..................................1611.001.00----------------------------------1.00------------
...........................................CCCAGGAGGTTGAGGCTGCAGTGAGCGGTC.................................................................................................................................................................................301.000.00-1.00---------------------------------------------
.........................................................................ATGGCACCACTGCACTCCAGCCGGTG.......................................................................................................................................................261.000.001.00----------------------------------------------
...........................................................................................AGCCTGGGCGACAGAACAA............................................................................................................................................1901.001.00--------------------------------1.00--------------
...........................................................................................AGCCTGGGCGACAGAACAAGACCGT......................................................................................................................................251.000.001.00----------------------------------------------
.........................................AGCCCAGGAGGTTGAGGCTGGAGA.........................................................................................................................................................................................241.000.00-----------------------------------------1.00-----
.........................................AGCCCAGGAGGTTGAGGCTGCAGTGAGCTACAG................................................................................................................................................................................331.000.00-1.00---------------------------------------------
.......................................................AGGCTGCAGTGAGCTATGATGG.............................................................................................................................................................................2201.001.00---------1.00-------------------------------------
................................................................................................................................AAAAGATGTGGATGGAGTA.......................................................................................................191.000.00----------------------------------------1.00------
........................................................................................................................................................CGGTGGGTGGGCTGT...................................................................................1580.120.12--------------------------------------------0.12--
.....................CTACTCAGGAGGCTTGC....................................................................................................................................................................................................................1790.110.11----------------------------------------------0.11
.........................................................................................................................................................................TCACCAAGCCCCCAC..................................................................1590.110.11-0.11---------------------------------------------

Antisense strand
GGCACATGCCTATTGTTCCAGCTACTCAGGAGGCTTGCCTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCTATGATGGCACCACTGCACTCCAGCCTGGGCGACAGAACAAGACCCTGTCTCTAAAAAAAAAAGATGTGGATGGGAGGGGGAACGGTGGGTGGGCTGTCCTCACCAAGCCCCCACCCTATCTGCTCTCCAGCTAAACGACGGACAGTTCACAGTCATCCAGCTCGTGGGCATGCTGCGGGG
............................................................................((.(((..((......)).)))))............((((.((((....................)))).))))....................................................................................................
....................................................................69...............................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM956925PAZD5SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577580(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029126(GSM416755)
143B. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR189786SRR189785SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................GCCATCATAGCTCACT............................................................................................................................................................................ 16011.0011.00--7.00-----------1.00---2.00----------1.00-----------------
.........................................................................................................................TAAAAAAAAAAGATGTGATTG............................................................................................................ 214.000.00---1.002.00---1.00--------------------------------------
.........................................................................................................................TAAAAAAAAAAGATGTAACG............................................................................................................. 204.000.00---1.001.002.00-----------------------------------------
.........................................................................................................................TAAAAAAAAAAGATGAAAG.............................................................................................................. 193.000.00----2.001.00-----------------------------------------
.........................................................................................................AACAAGACCCTGTCTCTAAGCT........................................................................................................................... 223.000.00-3.00---------------------------------------------
........................................................GGCTGCAGTGAGCTATGATGACC........................................................................................................................................................................... 233.000.003.00----------------------------------------------
..........................................GCCCAGGAGGTTGAGGCTGCACAGG....................................................................................................................................................................................... 252.000.00-2.00---------------------------------------------
...........................................................................................................CAAGACCCTGTCTCTAAAAAAAAT....................................................................................................................... 242.000.00-2.00---------------------------------------------
.........................................................................................................................TAAAAAAAAAAGATGTGACG............................................................................................................. 202.000.00---1.00----1.00--------------------------------------
............................................................................................GCCTGGGCGACAGAACAAGACCCTCAG................................................................................................................................... 272.000.002.00----------------------------------------------
.........................................................................................................................TAAAAAAAAAAGATGTGAAAG............................................................................................................ 212.000.00-----1.00-1.00---------------------------------------
........................................................................................................................ACATCTTTTTTTTTTAG................................................................................................................. 1791.111.110.11--0.220.11---0.56------------------------------------0.11-
................................................................TGAGCTATGATGGCACCACTGCATGC................................................................................................................................................................ 261.000.00-1.00---------------------------------------------
.........................................................................................................................TAAAAAAAAAAGATGTGAGG............................................................................................................. 201.000.00---1.00-------------------------------------------
.........................................................................................................................TAAAAAAAAAAGATGCG................................................................................................................ 171.000.00---1.00-------------------------------------------
......................................................................................................CAGAACAAGACCCTGTCTCTAAAAAACCAC...................................................................................................................... 301.000.001.00----------------------------------------------
....................................................................................GCACTCCAGCCTGGGCGACAGAAGGCT........................................................................................................................................... 271.000.00-1.00---------------------------------------------
...................................................................................................................................................................................................................ACAGTTCACAGTCATGTT..................... 181.000.00-----------------------1.00-----------------------
...............TTCCAGCTACTCAGGATGA........................................................................................................................................................................................................................ 191.000.00----------------------------1.00------------------
..........................................................................TGGCACCACTGCACTCCAGCCTGAG....................................................................................................................................................... 251.000.00-1.00---------------------------------------------
.......................................................................................................................TCTAAAAAAAAAAGATCTC................................................................................................................ 191.000.00-------1.00---------------------------------------
..............TCCTGAGTAGCTGGAAC........................................................................................................................................................................................................................... 1701.001.00----------------1.00------------------------------
....................................................................................GCACTCCAGCCTGGGCGACAGAACATGGG......................................................................................................................................... 291.000.00-1.00---------------------------------------------
..................................................................................CTGCACTCCAGCCTGGGCGACAGAACGA............................................................................................................................................ 281.000.00-1.00---------------------------------------------
................................................................................................................CCCTGTCTCTAAAAAAAAAAGTTC.................................................................................................................. 241.000.00-1.00---------------------------------------------
............................................................................................GCCTGGGCGACAGAACAAGACCCTGTCTGGG............................................................................................................................... 311.000.001.00----------------------------------------------
........................................................................................GTTCTGTCGCCCAGGCTGGA.............................................................................................................................................. 2001.001.00---------1.00-------------------------------------
..............................................................................................................GACCCTGTCTCTAAAAAAAGTGC..................................................................................................................... 231.000.00-1.00---------------------------------------------
......................................................................................................................CTCTAAAAAAAAAAGAGCGG................................................................................................................ 201.000.001.00----------------------------------------------
...........................................................................GCCCAGGCTGGAGTGCAGTGGTGCC...................................................................................................................................................... 2501.001.00--------------1.00--------------------------------
..................................................GGTTGAGGCTGCAGTGAGCTATAGGT.............................................................................................................................................................................. 261.000.001.00----------------------------------------------
............................................................................................GCCTGGGCGACAGAACAAGACCCTCGG................................................................................................................................... 271.000.001.00----------------------------------------------
..................................................................................CTGCACTCCAGCCTGGGCGACAGAACGGA........................................................................................................................................... 291.000.001.00----------------------------------------------
..................................................................................CTGCACTCCAGCCTGGGCGACAGAACACGC.......................................................................................................................................... 301.000.001.00----------------------------------------------
..........................................................................................................TTTAGAGACAGGGTCTTGT............................................................................................................................. 1901.001.00------------------------1.00----------------------
...............................................................................................TGGGCGACAGAACAAGACCCTGTCTCTAACG............................................................................................................................ 311.000.00-1.00---------------------------------------------
.........................................................................................................................TAAAAAAAAAAGATGAAAC.............................................................................................................. 191.000.00---1.00-------------------------------------------
.....................................................................................................................................................................................CACCCTATCTGCTCTC..................................................... 161.000.00-------------------------------1.00---------------
............................................................................................GCCTGGGCGACAGAACAAGACCCTC..................................................................................................................................... 251.000.001.00----------------------------------------------
....................................................................................GCACTCCAGCCTGGGCGACAGAATGGG........................................................................................................................................... 271.000.00-1.00---------------------------------------------
.........................................................CATCATAGCTCACTGCAGC.............................................................................................................................................................................. 1901.001.00-----------1.00-----------------------------------
................................................................................................GGGCGACAGAACAAGTTGC....................................................................................................................................... 191.000.00-------------------1.00---------------------------
......GTAGCTGGAACAATAGGCA................................................................................................................................................................................................................................. 1980.120.12-------------------------------------------0.12---
........................................................................................................................CTAAAAAAAAAAGATGTCAG.............................................................................................................. 200.110.000.11----------------------------------------------