ID: uc003uwg.1_intron_22_0_chr7_100285734_r
GENE: GIGYF1(1)
chr7:100285684-100285876-


(1)
AGO2.ip 		(7)
B-CELL 		(1)
BRAIN 		(9)
BREAST 		(9)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(2)
HELA 		(1)
LIVER 		(19)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
ACGCCCAGCCCCACGATGGCAGCAGAGACACTCAACTTTGGGCCTGAGTGGTGAGTCACTTGTGCCTCGGCTGCCGTGGAGATTCGAGAAAGCACAGTCAGGCTGCCCTGACCTCTGTCTTCTTCTCTCTGTGTTGTGTCCAGGCTCAGGGCCCTGTCCGGGGGCGGCAGCGTGGCCTCCCCACCCCCGTCCC
.....................................................((((..((((((((((.((.......))...))))...))))))...)))).........................................................................................
..................................................51.....................................................106.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR040040(GSM532925)
G612N. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR040038(GSM532923)
G531N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
...........................................................TTGTGCCTCGGCTGCCGTGGAGAT..............................................................................................................2415.005.00-----1.00-----1.00------------1.00-1.00-----1.00-------------------------
...........................................CTGAGTGGTGAGTCACTTGT..................................................................................................................................2014.004.00---2.00-------------------------1.00---------1.00------------------
............................................................................TGGAGATTCGAGAAAGCACAGTCAG............................................................................................2513.003.00-3.00--------------------------------------------------------
......................................................................................AGAAAGCACAGTCAGGCTGCGT.....................................................................................223.000.00----------2.00------1.00----------------------------------------
.........................................................................CCGTGGAGATTCGAGAAAGCACAGTC..............................................................................................2613.003.00--1.00----------------------------------------1.001.00-------------
............................................................................TGGAGATTCGAGAAAGCACAGTCAGGCTGC.......................................................................................3012.002.00----2.00-----------------------------------------------------
......................................................................................AGAAAGCACAGTCAGGCTGCGTG....................................................................................232.000.001.00------------------------------------------------1.00--------
......................................................................................AGAAAGCACAGTCAGGCTGCTCTG...................................................................................242.000.00---------------1.00------------------------------------1.00-----
......................................................................................AGAAAGCACAGTCAGGCTGCCCT....................................................................................2312.002.002.00---------------------------------------------------------
......................................................................................AGAAAGCACAGTCAGGCTGCCT.....................................................................................222.000.001.00------1.00--------------------------------------------------
....................................................................GGCTGCCGTGGAGATTCGAGAAA......................................................................................................2312.002.00------2.00---------------------------------------------------
..............................................................................................CAGTCAGGCTGCCCTGA..................................................................................1721.501.50--0.50--------------------------------------1.00----------------
...................................................................................TCGAGAAAGCACAGTCAGGCTGCCC.....................................................................................2511.001.00-----------------------------------------------1.00----------
..................................................GTGAGTCACTTGTGCCTCGGCTG........................................................................................................................2311.001.00----------------------------1.00-----------------------------
............................................................................TGGAGATTCGAGAAAGCA...................................................................................................1811.001.001.00---------------------------------------------------------
...........................................................................GTGGAGATTCGAGAAAGCACAGTCAGGCTGC.......................................................................................3111.001.00---------------------1.00------------------------------------
.................................AACTTTGGGCCTGAGTG...............................................................................................................................................1721.001.00--------------------------------------------------------0.500.50
.....................................................................................................................................................................GGCAGCGTGGCCTCCTGCA.........191.000.00-------------------1.00--------------------------------------
......................................................................................AGAAAGCACAGTCAGGCTCCT......................................................................................211.000.00-----------------------------------1.00----------------------
.........................................................................................................................................................................GCGTGGCCTCCCCACCAC......181.000.00-------------------------------------1.00--------------------
............................................................................TGGAGATTCGAGAAAGCACAGT...............................................................................................2211.001.00----------------------------------------------1.00-----------
...........................................................................................................................TCTCTCTGTGTTGTGTCCAG..................................................2011.001.00---------1.00------------------------------------------------
..........................................................................................................................TTCTCTCTGTGTTGTGTCCAG..................................................2111.001.00----------------------1.00-----------------------------------
......................................................................................AGAAAGCACAGTCAGGCTGTCC.....................................................................................221.000.00-------------1.00--------------------------------------------
...............................................................................................................CCTCTGTCTTCTTCTCCTTC..............................................................201.000.00---------------------------------------------------1.00------
..............................CTCAACTTTGGGCCTGAGTGGTG............................................................................................................................................2311.001.00-----1.00----------------------------------------------------
.........CCCACGATGGCAGCAGAGACACT.................................................................................................................................................................2311.001.00--------1.00-------------------------------------------------
....................................................................................CGAGAAAGCACAGTCAGGCTGCCCTG...................................................................................2611.001.00------------------------------------------1.00---------------
.CGCCCAGCCCCACGATGGC.............................................................................................................................................................................1911.001.00--------------1.00-------------------------------------------
.........................................................................CCGTGGAGATTCGAGAAAGCACAGTCAGG...........................................................................................2911.001.00-----------1.00----------------------------------------------
............................................................................TGGAGATTCGAGAAAGCACAGTCAGG...........................................................................................2611.001.00--1.00-------------------------------------------------------
......................................................................................AGAAAGCACAGTCAGGCTGCCC.....................................................................................2211.001.00--------------------------------------------------1.00-------
...............ATGGCAGCAGAGACACTCA...............................................................................................................................................................1911.001.00-------1.00--------------------------------------------------
............ACGATGGCAGCAGAGACACT.................................................................................................................................................................2011.001.00------------1.00---------------------------------------------
...........................................................TTGTGCCTCGGCTGCCGTGGA.................................................................................................................2111.001.00---------------------------1.00------------------------------
...........................................................................GTGGAGATTCGAGAAAGCACAGTC..............................................................................................2411.001.00----------------1.00-----------------------------------------
..................................ACTTTGGGCCTGAGTGGTGAGTCA.......................................................................................................................................2411.001.00------------1.00---------------------------------------------
.......................................................................TGCCGTGGAGATTCGAGAAAGC....................................................................................................2211.001.00---------1.00------------------------------------------------
............................................................TGTGCCTCGGCTGCCGTGTTC................................................................................................................211.000.00-----------------------1.00----------------------------------
...........................................................TTGTGCCTCGGCTGCCGTGG..................................................................................................................2011.001.00--------1.00-------------------------------------------------
.................................................................................ATTCGAGAAAGCACAGTCAGGCTGCCC.....................................................................................2711.001.00--------------------1.00-------------------------------------
......................................TGGGCCTGAGTGGTGAGT.........................................................................................................................................1811.001.00-------------------------1.00--------------------------------
.........................................................................CCGTGGAGATTCGAGAAAGCACAGTCA.............................................................................................2711.001.00----------------------------------1.00-----------------------
..................................................................TCGGCTGCCGTGGAGATTCGAG.........................................................................................................2211.001.00------------------------------------------------1.00---------
..................................................................................TTCGAGAAAGCACAGTCAGGCTGT.......................................................................................241.000.00----------------------------------------1.00-----------------
......................................................................................AGAAAGCACAGTCAGGCTGCCTG....................................................................................231.000.00-------------------------------1.00--------------------------
.........................................................................CCGTGGAGATTCGAGAAAGCAC..................................................................................................2211.001.00------------------1.00---------------------------------------
..............................CTCAACTTTGGGCCTGAGTG...............................................................................................................................................2011.001.00---------------------------------1.00------------------------
...................................................................................TCGAGAAAGCACAGTCAGGC..........................................................................................2011.001.00------------------------------1.00---------------------------
............................................................................TGGAGATTCGAGAAAGCACAGTCAGGC..........................................................................................2711.001.00------------------------------------1.00---------------------
.........................................................................CCGTGGAGATTCGAGAAAGCACAGTCAG............................................................................................2811.001.00---------------------------------------------1.00------------
...........................................................................................................................................................GTCCGGGGGCGGCAGCGTGG..................2011.001.00--------------------------------------1.00-------------------
...................................................................................TCGAGAAAGCACAGTCAGGCTGCC......................................................................................2411.001.001.00---------------------------------------------------------
......................CAGAGACACTCAACTTT..........................................................................................................................................................1730.670.67-------------0.67--------------------------------------------
..............................................................................................................................CTCTGTGTTGTGTCCAG..................................................1720.500.50-------------------------------------------------------0.50--

Antisense strand
ACGCCCAGCCCCACGATGGCAGCAGAGACACTCAACTTTGGGCCTGAGTGGTGAGTCACTTGTGCCTCGGCTGCCGTGGAGATTCGAGAAAGCACAGTCAGGCTGCCCTGACCTCTGTCTTCTTCTCTCTGTGTTGTGTCCAGGCTCAGGGCCCTGTCCGGGGGCGGCAGCGTGGCCTCCCCACCCCCGTCCC
.....................................................((((..((((((((((.((.......))...))))...))))))...)))).........................................................................................
..................................................51.....................................................106.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR040040(GSM532925)
G612N. (cervix)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR040038(GSM532923)
G531N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
.......GCCCCACGATGGCAGCCCTC...................................................................................................................................................................... 201.000.00-----------------------------------------------------1.00----
................................................................................................................................................CCGGACAGGGCCCTGAG................................ 1720.500.50------------------------------------------------------0.50---