ID: uc003uwa.1_intron_0_0_chr7_100254314_f.5p
GENE: AK055267(1)
chr7:100254264-100254513+


(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(1)
B-CELL 		(4)
BRAIN 		(3)
BREAST 		(25)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(1)
OTHER 		(4)
SKIN

Sense strand
GGAGAGCAGGGAAGAGGCGGAGACCAGGACTCTGCAGGACGACTGATGAGGTCCCTATCCCCTTGCTTTTTATTTTTATTTTTATTTTTATGGTAGAGACGGAGGTCTTGTGATGTTGCCCAGGCTGGTCTCGAACTCCTGAGCTCAAGCGATCCTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCAGGTGCCAGCACGCCTGGATTAAAAAAAAATTTTTTATAGAGACGGGGTCTTGCTCTTTTGC
................................................................(((...........((((((((.....)))))))).(((((..((((..((..((.((((..(((.....))))))).)).)).)))).)))))..))).......................................................................................
............................................................61.....................................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189787SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR029128(GSM416757)
H520. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR038858(GSM458541)
MEL202. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		TAX577579(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
.................................................................CTTTTTATTTTTATTTTTATTTTTAATG.............................................................................................................................................................2838.000.0020.0013.00---4.001.00------------------------------------------
....................................................................................................................................................................................................................................AGACGGGGTCTTGCTCTAA...1915.000.00-------8.007.00----------------------------------------
.................................................................CTTTTTATTTTTATTTTTATTTTCTG...............................................................................................................................................................2614.000.007.002.00-1.00-2.002.00------------------------------------------
..................................................................TTTTTATTTTTATTTTTATTTTTATG..............................................................................................................................................................2659.009.006.402.20---0.200.20------------------------------------------
.....................................................................................................................................................................................................................................GACGGGGTCTTGCTCTAA...1806.001.00----3.00--------3.00-----------------------------------
......................................................................................................................................................................................................................................ACGGGGTCTTGCTCTAA...1704.001.00----3.00---------1.00----------------------------------
.......................................................................................................................................................................................................................................CGGGGTCTTGCTCTTAA..174.000.00----4.00--------------------------------------------
......................................................................................................................................................................................................................................ACGGGGTCTTGCTCTTAAA.193.000.00----3.00--------------------------------------------
..................................................................TTTTTATTTTTATTTTTATTTTCAAG..............................................................................................................................................................263.000.00------3.00------------------------------------------
.................................................................CTTTTTATTTTTATTTTTATTTTCT................................................................................................................................................................253.000.002.00-1.00----------------------------------------------
...................................................................TTTTATTTTTATTTTTATTTTCTTG..............................................................................................................................................................252.000.00-----1.001.00------------------------------------------
.................................................................................................................................................................................................................................TAGAGACGGGGTCTTGCTCTTA...222.000.00-----------1.00-------------------------1.00-----------
.................................................................CTTTTTATTTTTATTTTTATTTTTAATTG............................................................................................................................................................292.000.001.001.00-----------------------------------------------
.................................................................CTTTTTATTTTTATTTTTATTTTCTGC..............................................................................................................................................................272.000.00--1.001.00---------------------------------------------
.....................................................................................................................................................................................................................................GACGGGGTCTTGCTCTAGT..1902.001.00------------------2.00------------------------------
.................................................................CTTTTTATTTTTATTTTTATTTTTCTG..............................................................................................................................................................272.000.00---1.00--1.00------------------------------------------
..................................................................................................................................................................................................................................AGAGACGGGGTCTTGCTCAA....202.000.00---------------------1.00-------1.00-------------------
....................................................................................................................................................................................................................................AGACGGGGTCTTGCTCTTA...192.000.00----------------2.00--------------------------------
.................................................................................................................................................................................................................................TAGAGACGGGGTCTTGCTCT.....2002.002.00------------2.00------------------------------------
..................................................................TTTTTATTTTTATTTTTATTTTTCGC..............................................................................................................................................................261.000.00--1.00----------------------------------------------
.................................................................CTTTTTATTTTTATTTTTATTTCTT................................................................................................................................................................251.000.001.00------------------------------------------------
............................................................CCTTGCTTTTTATTTTTATTTTTTGTT...................................................................................................................................................................271.000.00---1.00---------------------------------------------
.....................................................................................................................................................................................................................................GACGGGGTCTTGCTCT.....1601.001.00-----------1.00-------------------------------------
...................................................................TTTTATTTTTATTTTTATTTTTCCCG.............................................................................................................................................................261.000.00-----1.00-------------------------------------------
.......................................................................................................................................................ATCCTCCTCAGCCTCCCAAGTAGCTGGGACTG...................................................................321.000.00---1.00---------------------------------------------
..................................................................TTTTTATTTTTATTTTTATTTTTCCTG.............................................................................................................................................................271.000.001.00------------------------------------------------
.................................................................................................................................................................................................................................TAGAGACGGGGTCTTGATTT.....201.000.00----------------------------------1.00--------------
.....................................................................................................................................................................................................................................GACGGGGTCTTGCTCTTTTAGA221.000.00----------------------------------------1.00--------
...........................................................................................................................................TGAGCTCAAGCGATCCTCCGA..........................................................................................211.000.00-----------------------------------1.00-------------
..................................................................................................................GTTGCCCAGGCTGGTCTCGATCA.................................................................................................................231.000.00------------------------1.00------------------------
......................................................................................................................................................................................................................................ACGGGGTCTTGCTCT.....1501.001.00--------------1.00----------------------------------
....................................................................TTTATTTTTATTTTTATTTTCTAC..............................................................................................................................................................241.000.00-------------------------------------------1.00-----
.................................................................CTTTTTATTTTTATTTTTATTTTTACT..............................................................................................................................................................271.000.00---1.00---------------------------------------------
........................................................................................................................................TCCTGAGCTCAAGCGACC................................................................................................181.000.00-----------1.00-------------------------------------
...........................................................................................................................................TGAGCTCAAGCGATCCTCCATTA........................................................................................231.000.00---------------------1.00---------------------------
........................................................................................................................................................TCCTCCTCAGCCTCCCAAGTAGCTAGA.......................................................................271.000.00--------------------1.00----------------------------
...............................................................................................................................................................................TGGGATTACAGGCAGGTTGC.......................................................201.000.00---------------------------------1.00---------------
...................................................................TTTTATTTTTATTTTTATTTTTCTTA.............................................................................................................................................................261.000.00--------------------1.00----------------------------
..............................................................................................................................................................................................................................TTATAGAGACGGGGTCTTGCCC......221.000.00---------1.00---------------------------------------
.................................................................................................................................................................................................................................TAGAGACGGGGTCTTGTAG......191.000.00------------------------------------1.00------------
.................................................................................................................................CTCGAACTCCTGAGCTCAAGCGATC................................................................................................2501.001.00-------------------1.00-----------------------------
............................................................CCTTGCTTTTTATTTTTATTTTTTG.....................................................................................................................................................................251.000.00---1.00---------------------------------------------
..................................................................................................................................................................................................................................AGAGACGGGGTCTTGCTCTTTTGC2411.001.00--1.00----------------------------------------------
.....................................................................................................................................................................................................................................GACGGGGTCTTGCTCTAAT..1901.001.00-----------------------1.00-------------------------
...................................................................................................................................................AGCGATCCTCCTCAGCCTTCTG.................................................................................221.000.00---1.00---------------------------------------------
..................................................................................................................................TCGAACTCCTGAGCTCAAGCGA..................................................................................................2201.001.00-----------------1.00-------------------------------
.................................................................CTTTTTATTTTTATTTTTATTTCTTG...............................................................................................................................................................261.000.00-----1.00-------------------------------------------
..................................................................TTTTTATTTTTATTTTTATTTTTATCAAG...........................................................................................................................................................291.000.00-----1.00-------------------------------------------
.................................................................CTTTTTATTTTTATTTTTATTTTCCG...............................................................................................................................................................261.000.00------1.00------------------------------------------
.................................................................CTTTTTATTTTTATTTTTATACCC.................................................................................................................................................................241.000.00---1.00---------------------------------------------
...........................................................................................................................................TGAGCTCAAGCGATCCTCCTAA.........................................................................................221.000.00--------------------------------------1.00----------
...................................................................TTTTATTTTTATTTTTATTTTCAA...............................................................................................................................................................241.000.00------1.00------------------------------------------
...............................................................................................................................................................................................................................TATAGAGACGGGGTCTTGCTCT.....2221.001.00---------1.00---------------------------------------
...................................................................................................................TTGCCCAGGCTGGTCTCGTACT.................................................................................................................221.000.00------------1.00------------------------------------
...................................................................TTTTATTTTTATTTTTATTTTTACTCT............................................................................................................................................................271.000.00---1.00---------------------------------------------
..........................................................................................................................................................................GTAGCTGGGATTACAGGCAGGGCCC.......................................................2501.001.00--1.00----------------------------------------------
..................................................................TTTTTATTTTTATTTTTATTTTTCTGG.............................................................................................................................................................271.000.00--1.00----------------------------------------------
..................................................................TTTTTATTTTTATTTTTATTTTTACTG.............................................................................................................................................................271.000.00-----1.00-------------------------------------------
............................................................................................................................................................................AGCTGGGATTACAGGCAGTGGC........................................................221.000.00--1.00----------------------------------------------
..........................................................................................................................................................................GTAGCTGGGATTACAGGCAGG...........................................................2101.001.00---------------1.00---------------------------------
...................................................................................................................................................AGCGATCCTCCTCAGCTG.....................................................................................181.000.00-------------------------1.00-----------------------
...............................................................TGCTTTTTATTTTTATTTTTATTTTTTTGC.............................................................................................................................................................301.000.00---1.00---------------------------------------------
.........................................................................................................................AGGCTGGTCTCGAACTCCTGAGAAGA.......................................................................................................261.000.00--------------------------------------------1.00----
.................................................................CTTTTTATTTTTATTTTTATTTCTGC...............................................................................................................................................................261.000.00---1.00---------------------------------------------
....................................................................TTTATTTTTATTTTTATTTTTATCTAT...........................................................................................................................................................271.000.00-----1.00-------------------------------------------
.....GCAGGGAAGAGGCGGCCC...................................................................................................................................................................................................................................181.000.00----------------------------1.00--------------------
...............................................................................................................................................................................TGGGATTACAGGCAGGTGCCATTT...................................................241.000.00---------------------------------------1.00---------
.................................................................CTTTTTATTTTTATTTTTATTTTCTTG..............................................................................................................................................................271.000.00------1.00------------------------------------------
...........................................................................................................................................................TCCTCAGCCTCCCAAGTAGCCGGC.......................................................................241.000.00---1.00---------------------------------------------
...........................................................................................................................................TGAGCTCAAGCGATCCTCCAAAA........................................................................................231.000.00----------------------1.00--------------------------
.................................................................................................................................................................................................................................TAGAGACGGGGTCTTGCTCTG....2101.002.00-----------------1.00-------------------------------
.................................................................CTTTTTATTTTTATTTTTATTTTTATTTTG...........................................................................................................................................................301.000.001.00------------------------------------------------
.....................................................................................................................................AACTCCTGAGCTCAAGCGCAG................................................................................................211.000.00--1.00----------------------------------------------
...............................................................................................................................................................................................................................TATAGAGACGGGGTCTTGCCCT.....221.000.00---------1.00---------------------------------------
.................................................................CTTTTTATTTTTATTTTGGGA....................................................................................................................................................................211.000.00------------------------------------------1.00------
...............................................................................................................................................................................................................................TATAGAGACGGGGTCTTGCTCTCA...2420.501.00----------------------------------------------0.50--
...............................................................................................................................................................................................................................TATAGAGACGGGGTCTTGCTCTGGA..2520.501.00---------------------------------------------0.50---
...............................................................................................................................................................................................................................TATAGAGACGGGGTCTTGCTCTAC...2420.501.00---------0.50---------------------------------------
................................................................................................................................................TCAAGCGATCCTCCTCAGCCTCCC..................................................................................2440.250.25---0.25---------------------------------------------
..AGAGCAGGGAAGAGGC........................................................................................................................................................................................................................................1690.110.11------------------------------------------------0.11

Antisense strand
GGAGAGCAGGGAAGAGGCGGAGACCAGGACTCTGCAGGACGACTGATGAGGTCCCTATCCCCTTGCTTTTTATTTTTATTTTTATTTTTATGGTAGAGACGGAGGTCTTGTGATGTTGCCCAGGCTGGTCTCGAACTCCTGAGCTCAAGCGATCCTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCAGGTGCCAGCACGCCTGGATTAAAAAAAAATTTTTTATAGAGACGGGGTCTTGCTCTTTTGC
................................................................(((...........((((((((.....)))))))).(((((..((((..((..((.((((..(((.....))))))).)).)).)))).)))))..))).......................................................................................
............................................................61.....................................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189787SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR029128(GSM416757)
H520. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029129(GSM416758)
SW480. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR038858(GSM458541)
MEL202. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		TAX577579(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................TTGCCCAGGCTGGTCTCGAAATC................................................................................................................ 235.000.00----------5.00--------------------------------------
..........................................................................................................................GGCTGGTCTCGAACTCCTGAGCTGGAC..................................................................................................... 273.000.00--3.00----------------------------------------------
.............................................................................................................................................................................GCTGGGATTACAGGCAGGGCA........................................................ 211.000.00---------------------------1.00---------------------
..........................................................................................................................GGCTGGTCTCGAACTCCTGAGCTCAAGCGAGG................................................................................................ 321.000.00---1.00---------------------------------------------
..........................................................................................................................GGCTGGTCTCGAACTCCTGAGGGCT....................................................................................................... 251.000.00--1.00----------------------------------------------
............................................................................................................................CTGGTCTCGAACTCCTGAGCTCAGGGC................................................................................................... 271.000.00---1.00---------------------------------------------
...................................................................................................................................................................................................................................GAGACGGGGTCTTGCTCTA.... 191.000.00-------------------------------1.00-----------------
........AGAGTCCTGGTCTCCGCCTCTTCCC......................................................................................................................................................................................................................... 2511.001.00------------------------------1.00------------------
........................................................................................................................................................TCCTCCTCAGCCTCCCAAGAGGG........................................................................... 231.000.00--1.00----------------------------------------------
...............................................................................................................GATGTTGCCCAGGCTGGTCTCGAACTGCA.............................................................................................................. 291.000.00--1.00----------------------------------------------
........................................................................................................................................................TCCTCCTCAGCCTCCCAGAGT............................................................................. 211.000.00----------------------1.00--------------------------
.....................................................................................................................................AGGATCGCTTGAGCTCAGGAGTT.............................................................................................. 2301.001.00---------------1.00---------------------------------
....................................................................................................................TGCCCAGGCTGGTCTCGAACTCCTGAGGA......................................................................................................... 291.000.00--1.00----------------------------------------------
.........................................................................................................................................AGGAGGATCGCTTGAGCTCAGG........................................................................................... 2201.001.00-----------1.00-------------------------------------
......................................................................................................................................................................CCAAGTAGCTGGGATTACCTCT.............................................................. 221.000.00-----------------------------------------1.00-------
........................................................................................................................................................TCCTCCTCAGCCTCCCAAGTCCG........................................................................... 231.000.00--1.00----------------------------------------------
..................................................................................................................................................................................................CAGCACGCCTGGATTACCA..................................... 191.000.00--------------------------------1.00----------------
..............................................................................................................TGATGTTGCCCAGGCTGGTCTGCA.................................................................................................................... 241.000.00--1.00----------------------------------------------
....................................................................................................................................................GCGATCCTCCTCAGCCTAGG.................................................................................. 201.000.00---------1.00---------------------------------------
..................................................................................................................GTTGCCCAGGCTGGTCTCGAATAGA............................................................................................................... 251.000.00--------------------------1.00----------------------
......................................................................................................................................................GATCCTCCTCAGCCTCCCAACCTG............................................................................ 241.000.00--1.00----------------------------------------------
..................................................................................................................GTTGCCCAGGCTGGTCTCGAACTTAC.............................................................................................................. 261.000.00---1.00---------------------------------------------
.....................................................................................................................................GAGGATCGCTTGAGCTCAGGAGTT............................................................................................. 2401.001.00-------------------1.00-----------------------------
.......................................................TATCCCCTTGCTTTTTGA................................................................................................................................................................................. 181.000.00---------1.00---------------------------------------
..................................TCATCAGTCGTCCTG......................................................................................................................................................................................................... 1530.330.33-----------------------------------------------0.33-