ID: uc003uus.2_intron_12_0_chr7_100016813_r
GENE: (1)
chr7:100016763-100017302-


(2)
B-CELL
(1)
BRAIN
(1)
BREAST
(13)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(3)
LIVER
(1)
OTHER
(3)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
AGAAAAAAAGAAAGGCACAAATCAACAAGCAAGCAGAGAAGAAAGAAAAGGTACCAGTCATAGTGGTGGGCTCTGGTAGGAGATTTTCTCATACCTTACCCCTGGCTCAGGCTAGACAAACAGAGTCTTTTCACACTGGGGAAATTCACCCTAGAGTTTCAGGTTTGTATTCCTTTTTGAGGGCTTCCTTTTTTTTTTCTCAAAGAGGTCAAAAATGTTTTGATGAAAGAATTGAGCAGGAAATAATGGGATGAGGTGGGTTAGAGGTGGGGATAGAAGTAGACAGAGACATTATACACTTTTCTCTTTCCTTTGACTCCTTTATTCCCAGGAGATCTGGGATATAGTTCATGGCCTCCTTAGGTATGCTGACTGCATGCCTTCCGTCTTATAAACTTACTGCCTCATCTGAAGGAGGCTTCCCTGACTGTTCAGAGGGGAAAACTATGGAAAGATAAGTGGTTTTCCTCCCCTACCCTTGTCTCTGCAGGAAAAATCAAGTCTTACCAATGCAGAATTTGAGGAGATTGTCCAGATTGT
......................................................................................................................................................................................(((((((...(((((((((((....((((((.....)))))).......))))).))))))....))))...)))...........................................................................................................................................................................................................................................................................................
....................................................................................................................................................................................181................................................................................264..................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM532877(GSM532877)
G691N. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532874(GSM532874)
G699T. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR343337DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................................................................................AATAATGGGATGAGGCAGG........................................................................................................................................................................................................................................................................................1916.000.00-----4.003.002.00----2.002.001.001.00--1.00----------------
.................................................................................................................................................................................................................................................AATAATGGGATGAGGACA.........................................................................................................................................................................................................................................................................................183.000.00-----------------2.00------------1.00----
.................................................................................................................................................................................................................................................AATAATGGGATGAGGCAG.........................................................................................................................................................................................................................................................................................183.000.00-------1.00------1.00-------------1.00------
.........................................................................................................................................................................................TCCTTTTTTTTTTCTCATTG...............................................................................................................................................................................................................................................................................................................................................202.000.00-----------2.00-----------------------
.......................................................................................................................................................................................CTTCCTTTTTTTTTTATTG..................................................................................................................................................................................................................................................................................................................................................192.000.00---------2.00-------------------------
...................................................................................................................................................................................AGGGCTTCCTTTTTTTTTTCTTT..................................................................................................................................................................................................................................................................................................................................................232.000.00---2.00-------------------------------
.......................................................................................................................................................................................CTTCCTTTTTTTTTTCTCTG.................................................................................................................................................................................................................................................................................................................................................202.000.00--2.00--------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAATGCAGAATTTGAGGAGATTGTC........2812.002.00--------2.00--------------------------
.........................................................................TGGTAGGAGATTTTCTAGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------------------------1.00----------
......................................................................................................................................................................................GCTTCCTTTTTTTTTTCTTGAG................................................................................................................................................................................................................................................................................................................................................221.000.00-1.00---------------------------------
...................................................................................................................................................................................AGGGCTTCCTTTTTTTTTTTTC...................................................................................................................................................................................................................................................................................................................................................221.000.00---1.00-------------------------------
.................................................................................................................................................................................................................................................AATAATGGGATGAGGAAAA........................................................................................................................................................................................................................................................................................191.000.00---------------1.00-------------------
.......................................................................................................................................................................................CTTCCTTTTTTTTTTCTCTGT................................................................................................................................................................................................................................................................................................................................................211.000.00----------1.00------------------------
.......................................................................................................................................................................................CTTCCTTTTTTTTTTCGAG..................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------------
.................................................................................................................................................................................................................................................AATAATGGGATGAGGCAA.........................................................................................................................................................................................................................................................................................181.000.00---------------------1.00-------------
.......................................................................................................................................................................................CTTCCTTTTTTTTTTCTCTAAG...............................................................................................................................................................................................................................................................................................................................................221.000.00--1.00--------------------------------
...................................................................................................................................................................................................................................................................GTTAGAGGTGGGGATAGAAGTAGA.................................................................................................................................................................................................................................................................2411.001.00-----------------------------1.00-----
.........................CAAGCAAGCAGAGAATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------------------------1.00---
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGAATTTGAGGAGA.............1911.001.00----------------------1.00------------
...........................................................................................................................................................................................CTTTTTTTTTTCTCAAACAG.............................................................................................................................................................................................................................................................................................................................................201.000.00--1.00--------------------------------
........................................................................................................................................................................................TTCCTTTTTTTTTTCTCACATT..............................................................................................................................................................................................................................................................................................................................................221.000.00--1.00--------------------------------
.......................................................................................................................................................................................CTTCCTTTTTTTTTTAGTG..................................................................................................................................................................................................................................................................................................................................................191.000.00---1.00-------------------------------
.......................................................................................................................................................................................................................................................................GAGGTGGGGATAGAAAAGG..................................................................................................................................................................................................................................................................191.000.00-----------------------1.00-----------
.......................................................................................................................................................................................CTTCCTTTTTTTTTTCTCATT................................................................................................................................................................................................................................................................................................................................................211.000.00----------1.00------------------------
.............................................................................................................................................................................TTTTTGAGGGCTTCCTAC.............................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------1.00--------
.........................................................................................................................................................................................TCCTTTTTTTTTTCTCTGTT...............................................................................................................................................................................................................................................................................................................................................201.000.00---1.00-------------------------------
.......................................................................................................................................................................................CTTCCTTTTTTTTTTCTCCGG................................................................................................................................................................................................................................................................................................................................................211.000.00-1.00---------------------------------
...................................................................................................................................................................................AGGGCTTCCTTTTTTTTTTCTCTTCT...............................................................................................................................................................................................................................................................................................................................................261.000.00-1.00---------------------------------
.......................................................................TCTGGTAGGAGATTTTCTAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---------------------------1.00-------
.........................................................................................................................................................................................................................................................................................................ACTTTTCTCTTTCCTTTGTT...............................................................................................................................................................................................................................201.000.00-1.00---------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGCTTCCCTGACTCCAG...........................................................................................................221.000.00---1.00-------------------------------
...................................................................................................................................................................................AGGGCTTCCTTTTTTTTTTTCCC..................................................................................................................................................................................................................................................................................................................................................231.000.00-1.00---------------------------------
..........................................................................................................................................................................................CCTTTTTTTTTTCTCAAAG...............................................................................................................................................................................................................................................................................................................................................1920.500.50-----------0.50-----------------------
................................................................................................................................................................................................................................................AAATAATGGGATGAGGCAGG........................................................................................................................................................................................................................................................................................2050.400.20------0.200.20---------------------------
................................................................................................................................................................................................................................................AAATAATGGGATGAGG............................................................................................................................................................................................................................................................................................1650.200.20---------------------------------0.20-
................................................................................................................................................................................................................................................AAATAATGGGATGAGGCA..........................................................................................................................................................................................................................................................................................1850.200.20------------0.20----------------------
........................................................................................................................................................................................................................................................................AGGTGGGGATAGAAGT....................................................................................................................................................................................................................................................................1660.170.17----------------------------------0.17

Antisense strand
AGAAAAAAAGAAAGGCACAAATCAACAAGCAAGCAGAGAAGAAAGAAAAGGTACCAGTCATAGTGGTGGGCTCTGGTAGGAGATTTTCTCATACCTTACCCCTGGCTCAGGCTAGACAAACAGAGTCTTTTCACACTGGGGAAATTCACCCTAGAGTTTCAGGTTTGTATTCCTTTTTGAGGGCTTCCTTTTTTTTTTCTCAAAGAGGTCAAAAATGTTTTGATGAAAGAATTGAGCAGGAAATAATGGGATGAGGTGGGTTAGAGGTGGGGATAGAAGTAGACAGAGACATTATACACTTTTCTCTTTCCTTTGACTCCTTTATTCCCAGGAGATCTGGGATATAGTTCATGGCCTCCTTAGGTATGCTGACTGCATGCCTTCCGTCTTATAAACTTACTGCCTCATCTGAAGGAGGCTTCCCTGACTGTTCAGAGGGGAAAACTATGGAAAGATAAGTGGTTTTCCTCCCCTACCCTTGTCTCTGCAGGAAAAATCAAGTCTTACCAATGCAGAATTTGAGGAGATTGTCCAGATTGT
......................................................................................................................................................................................(((((((...(((((((((((....((((((.....)))))).......))))).))))))....))))...)))...........................................................................................................................................................................................................................................................................................
....................................................................................................................................................................................181................................................................................264..................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
GSM532877(GSM532877)
G691N. (cervix)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532874(GSM532874)
G699T. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR343337DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGCTTCCCTGAG................................................................................................................ 1813.000.0010.33---2.67------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGAGGGGAAAACTCTG........................................................................................... 202.000.00----------------2.00------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTTCCCTGACTGTGGGG......................................................................................................... 201.000.00-1.00---------------------------------
.........................................................................................................................................................................................................................TTTTGATGAAAGAATAGA................................................................................................................................................................................................................................................................................................................. 181.000.00--------------------------------1.00--
...........................................................................................................................................................................................................................................................................................................TTTTCTCTTTCCTTTGACCA............................................................................................................................................................................................................................. 201.000.00--------1.00--------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................AAACTTACTGCCTCATAAA................................................................................................................................. 191.000.00-------------------1.00---------------
.GAAAAAAAGAAAGGCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-1.00---------------------------------
...............................................................................................................CTAGACAAACAGAGTGA............................................................................................................................................................................................................................................................................................................................................................................................................................ 171.000.00---------1.00-------------------------
...........................................................................................................................................................................................................................TTGATGAAAGAATTGATTT.............................................................................................................................................................................................................................................................................................................. 191.000.00----------1.00------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................AAACTTACTGCCTCATGTG................................................................................................................................. 191.000.00--------------------1.00--------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGCTTCCCTGACG............................................................................................................... 191.000.001.00----------------------------------
...................................................................................................................................................................................................................AAAATGTTTTGATGACACA...................................................................................................................................................................................................................................................................................................................... 191.000.00----1.00------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TATAAACTTACTGCCTCAG.................................................................................................................................... 191.000.00-------------------------1.00---------
...........................................................................................................................................................................................................................................................TGAGGTGGGTTAGAGGTGGCAG........................................................................................................................................................................................................................................................................... 221.000.001.00----------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGAAGCCTCCTTCA................................................................................................................. 1820.500.500.50----------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGCTTCCCTGAT................................................................................................................ 180.330.00----0.33------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGAAGCCTCCTTC................................................................................................................. 1730.330.33----0.33------------------------------