ID: uc003uti.2_intron_13_0_chr7_99711892_r.5p
GENE: (1)
chr7:99716752-99717001-


(2)
AGO2.ip
(5)
B-CELL
(10)
BRAIN
(10)
BREAST
(16)
CELL-LINE
(2)
CERVIX
(3)
HEART
(3)
HELA
(1)
LIVER
(3)
OTHER
(10)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CAGGACCTGCTCCCACGAGGGGGCGGGGCCAAGATGGCGCCGAGCGCCGGGTGAGCAGCGTCTCGGCTGCCGCTAGAGTTTTCCTGCTCCCCGCGCTCGGGTGGCGGGGGCGGGTCTGAGTGGTACCCCGGAGGAGACCCTTTGAAGGTCCCTTGTGGGGACTGGAAAGAGGACGGTTGGTTGTGTGTCTGTGCTCGTGGGGACCCCGTGTGTGTGCCTGCATTGGAGAGATGTTGCAGGAGATGGGGTG
..................................................................................................................(((...((((.(((((((((.((((.......)))))))).)))))))))...)))................................................................................
..................................................................................................................115.............................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR037935(GSM510473)
293cand3. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785TAX577742(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR040023(GSM532908)
G575T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040027(GSM532912)
G220T. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.............................................................................................................................................................GGGACTGGAAAGAGGACG...........................................................................18127.0027.006.00--6.00-3.00----2.00--1.00--2.00-2.00----1.00----------1.00-----------1.00---------1.00-1.00-------
......................................................................................................................................................CCTTGTGGGGACTGGAAAGAG...............................................................................2117.007.00-7.00----------------------------------------------------------------
.....................................CGCCGAGCGCCGGGTGAG...................................................................................................................................................................................................1816.006.00--4.00------------------1.00----------------------------1.00---------------
.......................................................................................................................GTGGTACCCCGGAGGAGACCCTT............................................................................................................2314.004.00-------4.00----------------------------------------------------------
.............................................................................................................................................................GGGACTGGAAAGAGGACGG..........................................................................1914.004.00-----1.00--1.00----------1.00----------------------------------1.00-----------
...........................................................................................................................................................................GACGGTTGGTTGTGTGTCTG...........................................................2013.003.00----3.00-------------------------------------------------------------
......................................GCCGAGCGCCGGGTGAG...................................................................................................................................................................................................1713.003.00-----------1.00---------1.00---------------------------------1.00----------
...................................................................................CTGCTCCCCGCGCTCGGGT....................................................................................................................................................1913.003.00------1.00-----2.00-----------------------------------------------------
.............................................................................................................................................................GGGACTGGAAAGAGGACGGGT........................................................................2113.004.001.00----------------------1.00-----------------------------1.00------------
......................................................................................................................................................CCTTGTGGGGACTGGAAAGAGGACG...........................................................................2512.002.00---1.00--------------------------------------------------------1.00-----
................................................................................................................................................................ACTGGAAAGAGGACGGTTGG......................................................................2012.002.00----2.00-------------------------------------------------------------
...........................................GCGCCGGGTGAGCAGCG..............................................................................................................................................................................................1712.002.00---------2.00--------------------------------------------------------
.............................................................................................................................................................GGGACTGGAAAGAGGACGGGTC.......................................................................2212.004.001.00-----------------------------1.00-----------------------------------
....................................GCGCCGAGCGCCGGGTGAG...................................................................................................................................................................................................1912.002.00--1.00--------------------------------------------1.00------------------
...............................................CGGGTGAGCAGCGTCTCG.........................................................................................................................................................................................1812.002.00------2.00-----------------------------------------------------------
...............................................................CGGCTGCCGCTAGAGTTTTC.......................................................................................................................................................................2012.002.00----------------------1.00-----------------------------1.00-------------
...........................................................................................................................................................TGGGGACTGGAAAGAGGACG...........................................................................2011.001.00-----1.00------------------------------------------------------------
................................................GGGTGAGCAGCGTCTCGGCTGCC...................................................................................................................................................................................2311.001.00------------------------------------------------1.00-----------------
...................................................................................CTGCTCCCCGCGCTCGG......................................................................................................................................................1711.001.00------------------------1.00-----------------------------------------
...............................................CGGGTGAGCAGCGTCTC..........................................................................................................................................................................................1711.001.00------------------------------------1.00-----------------------------
...........................................................................GAGTTTTCCTGCTCCCCG.............................................................................................................................................................1811.001.00--------------------------------------------1.00---------------------
........................................................AGCGTCTCGGCTGCCGC.................................................................................................................................................................................1711.001.00-----------------1.00------------------------------------------------
.............................................................................................................................................................GGGACTGGAAAGAGGACGGTGCT......................................................................231.000.00--------1.00---------------------------------------------------------
................................................................................................................................................................ACTGGAAAGAGGACGGTTGGTTGT..................................................................2411.001.00--------------------1.00---------------------------------------------
.......................................................CAGCGTCTCGGCTGCCGC.................................................................................................................................................................................1811.001.00------------------------------------------1.00-----------------------
.............................................................................................................................................................GGGACTGGAAAGAGGACGGG.........................................................................2011.004.001.00-----------------------------------------------------------------
...................................GGCGCCGAGCGCCGGGTGAG...................................................................................................................................................................................................2011.001.00--1.00---------------------------------------------------------------
.........................................................................................................................................................TGTGGGGACTGGAAAGAGGACGGT.........................................................................2411.001.00--------------------------------1.00---------------------------------
...............................................................................................CTCGGGTGGCGGGGGGGA.........................................................................................................................................181.000.00-------------------------------------1.00----------------------------
.............................................................................................................................................................GGGACTGGAAAGAGGACGGTTG.......................................................................2211.001.00--------1.00---------------------------------------------------------
..................................................................................................GGGTGGCGGGGGCGGGACG.....................................................................................................................................191.000.00-----------------------------1.00------------------------------------
.............................................................CTCGGCTGCCGCTAGAG............................................................................................................................................................................1711.001.00----------------------------------------1.00-------------------------
...............................................................CGGCTGCCGCTAGAG............................................................................................................................................................................1511.001.00-------------------------1.00----------------------------------------
..........................................AGCGCCGGGTGAGCAGCGTCTCG.........................................................................................................................................................................................2311.001.00--1.00---------------------------------------------------------------
.............................................................................................................GCGGGTCTGAGTGGT..............................................................................................................................1511.001.00----------------------1.00-------------------------------------------
..................................TGGCGCCGAGCGCCGGGTGAG...................................................................................................................................................................................................2111.001.00-----------1.00------------------------------------------------------
.........................................................................................................................................................TGTGGGGACTGGAAAGAGGA.............................................................................2011.001.001.00-----------------------------------------------------------------
........................................................................................................................................................TTGTGGGGACTGGAAAGAGGACG...........................................................................2311.001.00-------------------1.00----------------------------------------------
..................................................................................................................TCTGAGTGGTACCCCGGAG.....................................................................................................................1911.001.00------1.00-----------------------------------------------------------
.......................................................................................................................................................CTTGTGGGGACTGGAAAGAGGACGGG.........................................................................261.000.001.00-----------------------------------------------------------------
..............................................................................................................................................................................................................................TTGGAGAGATGTTGCAGGA.........1911.001.00--------------1.00---------------------------------------------------
....................................................GAGCAGCGTCTCGGCTG.....................................................................................................................................................................................1711.001.00---------------1.00--------------------------------------------------
................................................................................................TCGGGTGGCGGGGGCGAG........................................................................................................................................181.000.00---------------------------------------------------------1.00--------
...........................................GCGCCGGGTGAGCAGCGTC............................................................................................................................................................................................1911.001.00---------1.00--------------------------------------------------------
.............................................GCCGGGTGAGCAGCGTCT...........................................................................................................................................................................................1811.001.00---------------------------------------------------------------1.00--
......................................................GCAGCGTCTCGGCTGCCGCTAGAG............................................................................................................................................................................2411.001.00--------------------------------------1.00---------------------------
................................................GGGTGAGCAGCGTCTCGGCTG.....................................................................................................................................................................................2111.001.00--------------------1.00---------------------------------------------
.........................................GAGCGCCGGGTGAGCAGC...............................................................................................................................................................................................1811.001.00-----------------1.00------------------------------------------------
............................................................................AGTTTTCCTGCTCCCCGCGCT.........................................................................................................................................................2111.001.00-------------------------------------------------------------1.00----
.......................................................................................................................................................CTTGTGGGGACTGGAAAGAGGAC............................................................................2311.001.00----------------------------1.00-------------------------------------
.......................................................................................................................................................................................................................................TGTTGCAGGAGATGGAACA191.000.00--------------------------------------------------------------1.00---
....................................GCGCCGAGCGCCGGGTGAGCAG................................................................................................................................................................................................2211.001.00-----------------------------------1.00------------------------------
..........................GGCCAAGATGGCGCCGAGCGCCGGGTGAGCAG................................................................................................................................................................................................3211.001.00---------------------------1.00--------------------------------------
..........................................AGCGCCGGGTGAGCAGCG..............................................................................................................................................................................................1811.001.00-----------------------------------------1.00------------------------
..................................TGGCGCCGAGCGCCGGGT......................................................................................................................................................................................................1811.001.00---------------------------------------------------1.00--------------
...........................................................................................................................................................TGGGGACTGGAAAGAGGACGGTTGGTTGCGTG...............................................................321.000.00--------------------------1.00---------------------------------------
.............................................................................................................................................................GGGACTGGAAAGAGGAC............................................................................1721.001.001.00-----------------------------------------------------------------
.......................................................................................................................................................CTTGTGGGGACTGGAAAGAGGACG...........................................................................2411.001.00-----------------------------------------------------------1.00------
.......................................................................................TCCCCGCGCTCGGGTCGT.................................................................................................................................................181.000.00---------------1.00--------------------------------------------------
......................................................................................................................................................CCTTGTGGGGACTGGAAGGAG...............................................................................211.000.00-1.00----------------------------------------------------------------
.................................................................................................................................................................CTGGAAAGAGGACGGT.........................................................................1611.001.00------1.00-----------------------------------------------------------
......................................................................................................................................................CCTTGTGGGGACTGGAAAGAGGAAG...........................................................................251.000.00---------------------------------------1.00--------------------------
......................................................................................................GGCGGGGGCGGGTCTGGACG................................................................................................................................201.000.00--------1.00---------------------------------------------------------
...................................GGCGCCGAGCGCCGGGTGAGCAGCG..............................................................................................................................................................................................2511.001.00---------------------------------1.00--------------------------------
.......................................................................................................................................................CTTGTGGGGACTGGAATTT................................................................................191.000.00----1.00-------------------------------------------------------------
.............................................................................................................................................................GGGACTGGAAAGAGGACGGGG........................................................................2111.004.00-----1.00------------------------------------------------------------
.....................................CGCCGAGCGCCGGGTGAGCAG................................................................................................................................................................................................2111.001.00--1.00---------------------------------------------------------------
...............................................................................................................GGGTCTGAGTGGTACCCCGGAGGAGACCCTTTGAAGGTCCCTTGTGGGGACTGGAAAGAGGACG...........................................................................6411.001.00-------------------------------------------1.00----------------------
...........................................................................................................................................................TGGGGACTGGAAAGATGGC............................................................................191.000.00-------------------------------1.00----------------------------------
.............................................................................GTTTTCCTGCTCCCCGC............................................................................................................................................................1720.500.50----------------------------------------------------------------0.50-
................................................................................................................................................................ACTGGAAAGAGGACGGCTGG......................................................................2030.330.33--------------------------0.33---------------------------------------
............................................................................................................................................................GGGGACTGGAAAGAGG..............................................................................1630.330.33-------------------------0.33----------------------------------------
................................................................................................................................................................ACTGGAAAGAGGACGG..........................................................................1630.330.33-----------------------------------------------------------------0.33
........................................................................................................................................................TTGTGGGGACTGGAA...................................................................................1590.110.11-------------------------0.11----------------------------------------

Antisense strand
CAGGACCTGCTCCCACGAGGGGGCGGGGCCAAGATGGCGCCGAGCGCCGGGTGAGCAGCGTCTCGGCTGCCGCTAGAGTTTTCCTGCTCCCCGCGCTCGGGTGGCGGGGGCGGGTCTGAGTGGTACCCCGGAGGAGACCCTTTGAAGGTCCCTTGTGGGGACTGGAAAGAGGACGGTTGGTTGTGTGTCTGTGCTCGTGGGGACCCCGTGTGTGTGCCTGCATTGGAGAGATGTTGCAGGAGATGGGGTG
..................................................................................................................(((...((((.(((((((((.((((.......)))))))).)))))))))...)))................................................................................
..................................................................................................................115.............................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR037935(GSM510473)
293cand3. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189785TAX577742(Rovira)
total RNA. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191556(GSM715666)
45genomic small RNA (size selected RNA from t. (breast)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR040023(GSM532908)
G575T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040027(GSM532912)
G220T. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
..............................................................TCGGCTGCCGCTAGATA........................................................................................................................................................................... 171.000.00-------------------------------------------------1.00----------------
....................................................................CAGGAAAACTCTAGCGGC.................................................................................................................................................................... 1811.001.00-------------1.00----------------------------------------------------
.................................................................................................CGGGTGGCGGGGGCGGCAC...................................................................................................................................... 191.000.00------------------------1.00-----------------------------------------
...........................GCCAAGATGGCGCCGAGT............................................................................................................................................................................................................. 181.000.00--------------1.00---------------------------------------------------
...............................................................................................CTCGGGTGGCGGGGGGGGA........................................................................................................................................ 191.000.00---------------------------------------------1.00--------------------