uc003usw.1_intron_10_0_chr7_99696827

ATGGTCCGAAGCCCCCAGAACCAGTACCCTGCTGAACTCATGCGCAGATTGTGAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCCCCTTAGTGAGCTGTATTTTCAAGGCCCTAGCAGCAACAAGCCTCGTGTGATCCGGG
...................................................((((.((.....((((.(((......(((..((((....))))..)))..))).))))........)).))))...................................................
..................................................51........................................................................125................................................

Size

Perfect hit

Total Norm

Perfect Norm

DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)

DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)

SRR207110(GSM721072)
Nuclear RNA. (cell line)

GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)

SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)

SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)

SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)

SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)

SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)

SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)

SRR037943(GSM510481)
293DcrTN. (cell line)

SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)

TAX577740(Rovira)
total RNA. (breast)

SRR037937(GSM510475)
293cand2. (cell line)

SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)

SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)

GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)

SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)

TAX577580(Rovira)
total RNA. (breast)

DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR189787

DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)

GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)

DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)

SRR038858(GSM458541)
MEL202. (cell line)

SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)

SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)

TAX577739(Rovira)
total RNA. (breast)

SRR038861(GSM458544)
MM466. (cell line)

SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)

SRR390723(GSM850202)
total small RNA. (cell line)

SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)

SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)

SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)

SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)

SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)

SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

..................................................GTGAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCCCCTTAG..................................................

35.00

19.00

12.00

4.00

.................................GAACTCATGCGCAGATT.............................................................................................................................

13.00

9.00

1.00

................................TGAACTCATGCGCAGATT.............................................................................................................................

11.00

1.00

2.00

1.00

..................................................GTGAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCCCCTTA...................................................

9.00

8.00

1.00

....................................................................................................GTTTGTGACTGTTTTCTCCCCTTAGAA................................................

6.00

2.00

6.00

..........................................CGCAGATTGTGAGTGGTCTCTG...............................................................................................................

6.00

..................................................GTGAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCCCCTTAGTT................................................

5.00

1.00

5.00

..................................................GTGAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCA........................................................

4.00

0.00

4.00

..................................................GTGAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCCCCTTAGTGAGCTA...........................................

3.00

0.00

3.00

.........................ACCCTGCTGAACTCATGCGCAGA...............................................................................................................................

3.00

2.00

1.00

..........................................................................................................GACTGTTTTCTCCCCTTAG..................................................

2.50

...................ACCAGTACCCTGCTGAACTCATGCGCAG................................................................................................................................

2.00

..................................AACTCATGCGCAGATT.............................................................................................................................

2.00

1.00

........................................................................................CTCCAGGATCTTGTTTGTGACTGT...............................................................

2.00

..................................................GTGAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCCCCTT....................................................

2.00

......................................................................................................TTGTGACTGTTTTCTCCCCTTAGAA................................................

2.00

0.00

2.00

...............CAGAACCAGTACCCTGCTGAACT.........................................................................................................................................

2.00

.......................................................................................................TGTGACTGTTTTCTCCCCTTAGAAA...............................................

2.00

0.00

2.00

..................................AACTCATGCGCAGATTGTGAGTGG.....................................................................................................................

2.00

....................................................................................................GTTTGTGACTGTTTTCTCCCCTTAG..................................................

2.00

1.00

.....................CAGTACCCTGCTGAACTCATGCGCA.................................................................................................................................

2.00

1.00

..................................................GTGAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCCCCTTAGAA................................................

2.00

35.00

2.00

............CCCCAGAACCAGTACCCTGCTGAACTCATGC....................................................................................................................................

2.00

......................................................GTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCCCCTTAG..................................................

2.00

.........................ACCCTGCTGAACTCATGCGCAGATTTG...........................................................................................................................

2.00

0.00

1.00

..................................................GTGAGTGGTCTCTGTCGGGAAA.......................................................................................................

2.00

...............................CTGAACTCATGCGCAGAT..............................................................................................................................

2.00

1.00

................................TGAACTCATGCGCAGAT..............................................................................................................................

2.00

.........................................................GTCTCTGTCGGGAAATCGG...................................................................................................

1.00

0.00

1.00

......................AGTACCCTGCTGAACTC........................................................................................................................................

1.00

........................TACCCTGCTGAACTCATGCGC..................................................................................................................................

1.00

...............................................................GTCGGGAAAGATGTAGGGATTGG.........................................................................................

1.00

.....................................................................AAAGATGTAGGGATTGGT........................................................................................

1.00

..................................................................GGGAAAGATGTAGGGATTGGTTCTC....................................................................................

1.00

..........................CCCTGCTGAACTCATGCGCAGATTTG...........................................................................................................................

1.00

0.00

1.00

.................................GAACTCATGCGCAGAT..............................................................................................................................

1.00

....................................................GAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTC...........................................................

1.00

...................................................................................................TGTTTGTGACTGTTTTCTCCCCTTAT..................................................

1.00

0.00

1.00

.....................CAGTACCCTGCTGAACTCATGCGCAG................................................................................................................................

1.00

..................................................GTGAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCCCCTTAGT.................................................

1.00

..........................................................................................................................................................ACAAGCCTCGTGTGATCCG..

1.00

.............................................................................AGGGATTGGTTCTCCAGGATCTT...........................................................................

1.00

..................................................GTGAGTGGTCTCTGTCGGGAA........................................................................................................

1.00

............CCCCAGAACCAGTACCCTGC...............................................................................................................................................

1.00

.......................................................................................TCTCCAGGATCTTGTTTGTGACT.................................................................

1.00

.................................GAACTCATGCGCAGATTGTGAGTGGT....................................................................................................................

1.00

............................CTGCTGAACTCATGCGCAGATTGTG..........................................................................................................................

1.00

...............................................................................................................................AGCTGTATTTTCAAGGCCC.............................

1.00

.......................................................................................................TGTGACTGTTTTCTCCCCT.....................................................

1.00

....................................................................................................................................TATTTTCAAGGCCCTAG..........................

1.00

............................................................................................................................................AGGCCCTAGCAGCAACAAGCC..............

1.00

......................................................GTGGTCTCTGTCGGGAAAG......................................................................................................

1.00

....................................................................................................GTTTGTGACTGTTTTCTCCCCT.....................................................

1.00

......................AGTACCCTGCTGAACTCATGCGC..................................................................................................................................

1.00

.................................................................CGGGAAAGATGTAGGGA.............................................................................................

1.00

............................CTGCTGAACTCATGCGCAGATTTGAG.........................................................................................................................

1.00

0.00

1.00

................................................................TCGGGAAAGATGTAGGGATTGGTT.......................................................................................

1.00

.................................................................................................................................CTGTATTTTCAAGGCCCTAGCAGCAACAAGCC..............

1.00

......................................................................................................TTGTGACTGTTTTCTCCCCTTAGAGA...............................................

1.00

0.00

1.00

..........................CCCTGCTGAACTCATGCGCAGATTCG...........................................................................................................................

1.00

0.00

1.00

................................TGAACTCATGCGCAGATTTGT..........................................................................................................................

1.00

11.00

1.00

...........................................................CTCTGTCGGGAAAGAGGGT.................................................................................................

1.00

0.00

1.00

..................................................................GGGAAAGATGTAGGGATTGGTTCT.....................................................................................

1.00

ATGGTCCGAAGCCCCCAGAACCAGTACCCTGCTGAACTCATGCGCAGATTGTGAGTGGTCTCTGTCGGGAAAGATGTAGGGATTGGTTCTCCAGGATCTTGTTTGTGACTGTTTTCTCCCCTTAGTGAGCTGTATTTTCAAGGCCCTAGCAGCAACAAGCCTCGTGTGATCCGGG ...................................................((((.((.....((((.(((......(((..((((....))))..)))..))).))))........)).))))................................................... ..................................................51........................................................................125................................................	Size	Perfect hit	Total Norm	Perfect Norm	DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela)	DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela)	SRR207110(GSM721072) Nuclear RNA. (cell line)	GSM1105753INPUT(GSM1105753) small RNA sequencing data. (hela)	SRR387909(GSM843861) specific-host: Homo sapienshost cell line: Su. (cell line)	DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	DRR001482(DRX001036) "Hela long total cell fraction, control". (hela)	SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell)	SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line)	SRR330892(SRX091730) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood)	SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line)	SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line)	SRR037943(GSM510481) 293DcrTN. (cell line)	SRR207118(GSM721080) RRP40 knockdown. (RRP40 cell line)	TAX577740(Rovira) total RNA. (breast)	SRR037937(GSM510475) 293cand2. (cell line)	SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell)	SRR060982(GSM569186) Human centrocyte [09-001]. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR033732(GSM497077) bjab cell line (bjab103). (B cell)	DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela)	SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line)	SRR330905(SRX091743) tissue: normal skindisease state: normal. (skin)	GSM1105748AGO1(GSM1105748) small RNA sequencing data. (ago1 hela)	SRR033718(GSM497063) Multiple Myeloma (U266). (B cell)	TAX577580(Rovira) total RNA. (breast)	DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line)	SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver)	SRR330888(SRX091726) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR189787	DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	SRR330890(SRX091728) tissue: skin psoriatic uninvolveddisease stat. (skin)	GSM450609(GSM450609) miRNA sequencing raw reads from post-mortem s. (brain)	DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	SRR033716(GSM497061) Mentle Cell Lymphoma (MCL114). (B cell)	SRR038858(GSM458541) MEL202. (cell line)	SRR039612(GSM531975) Human Normal Liver Tissue Sample 2. (liver)	SRR033727(GSM497072) HIV-positive DL (HIV412). (B cell)	TAX577739(Rovira) total RNA. (breast)	SRR038861(GSM458544) MM466. (cell line)	SRR330899(SRX091737) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell)	SRR390723(GSM850202) total small RNA. (cell line)	SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin)	SRR330858(SRX091696) tissue: skin psoriatic involveddisease state:. (skin)	SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin)	SRR330869(SRX091707) tissue: skin psoriatic involveddisease state:. (skin)	SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line)	SRR033730(GSM497075) Lymphoblastic (ALL411). (B cell)	SRR363674(GSM830251) cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............CCCCAGAACCAGTACCCAG................................................................................................................................................	19		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................GTTCTCCAGGATCTTG..........................................................................	16		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..............AGCAGGGTACTGGTTCTGG..............................................................................................................................................	19	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-