ID: uc003usv.1_intron_6_0_chr7_99695369_r
GENE: MCM7(7)
chr7:99695319-99695506-


(2)
AGO2.ip 		(7)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(18)
CELL-LINE 		(7)
CERVIX 		(4)
HEART 		(3)
HELA 		(1)
KIDNEY 		(7)
LIVER 		(6)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(2)
XRN.ip

Sense strand
TGAGTCTGGGGCTGGAGAGCTCACCAGGGAGGAGCTGAGGCAAATTGCAGGTGAGGGGCAGGGGAGAGAGAGGAAATTCCGTTTACATCCTAGCTCCCTTTTCCCCCAGAAAATAAAACAACCTTAACTTCTCTACAGAGGAGGATTTCTACGAAAAGCTGGCAGCTTCAATCGCCCCAGAAATATAC
...................................................((.((((.(((((.(((..((((.............))))..)))))))).))))))................................................................................
..................................................51.............................................................114........................................................................
SizePerfect hitTotal NormPerfect NormSRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR343336SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040041(GSM532926)
G612T. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532878(GSM532878)
G691T. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040029(GSM532914)
G026T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
..................................................GTGAGGGGCAGGGGAGAGAGAGGAAATTCCGTTTACATCCTAGCTCCCTTTTCCCCCAGAAAATAAAACAACCTTAACTTCTCTACAG..................................................88111.0011.00--11.00--------------------------------------------------------------------
......................ACCAGGGAGGAGCTGAGGCAA.................................................................................................................................................2119.009.00-8.00-------------1.00-------------------------------------------------------
.............................................................................................................................................AGGATTTCTACGAAAAGCTGGCAGC......................2515.005.00-3.00-------------------------------------------1.00--------1.00----------------
.......................CCAGGGAGGAGCTGAGGCA..................................................................................................................................................1915.005.004.00-----------------1.00----------------------------------------------------
.........................................................................................CTAGCTCCCTTTTCCCCCAGA..............................................................................2114.004.00---3.00----------------------------1.00--------------------------------------
.............................AGGAGCTGAGGCAAATTG.............................................................................................................................................1814.004.003.00----------------1.00-----------------------------------------------------
............................GAGGAGCTGAGGCAAATTG.............................................................................................................................................1913.003.001.00----------------1.001.00----------------------------------------------------
.................................................................................................................TAAAACAACCTTAACATGA........................................................193.000.00--------3.00--------------------------------------------------------------
...................................................TGAGGGGCAGGGGAGAGAGAGGAA.................................................................................................................2413.003.00---3.00-------------------------------------------------------------------
..................................................GTGAGGGGCAGGGGAGAGAGAG....................................................................................................................2213.003.00----1.00-----------------------1.00---------1.00--------------------------------
............................................................................................................................................GAGGATTTCTACGAAAAGCTGGCAGCTT....................2812.002.00---------2.00-------------------------------------------------------------
......................ACCAGGGAGGAGCTGAGGCA..................................................................................................................................................2012.002.00-------------------------------------------------------1.00------1.00--------
..................................................GTGAGGGGCAGGGGAGAGAGAT....................................................................................................................2212.001.00-----------------------1.00---------------------------1.00-------------------
.............................................................................................................................................AGGATTTCTACGAAAAGCTGGCAGCT.....................2612.002.00-----------2.00-----------------------------------------------------------
.......................CCAGGGAGGAGCTGAGGCAAAT...............................................................................................................................................2212.002.00-----1.00---------------------1.00-------------------------------------------
........GGGCTGGAGAGCTCACCAGGGAGGAGCT........................................................................................................................................................2812.002.00----------2.00------------------------------------------------------------
..........................................................................................................................................AGGAGGATTTCTACGAAAAGCTGGCAGC......................2812.002.00-------------1.00-----1.00---------------------------------------------------
.........................................................................................CTAGCTCCCTTTTCCCCCAGT..............................................................................212.000.00------------------------------1.00-------------1.00--------------------------
...................................................TGAGGGGCAGGGGAGAGAGAGGAAG................................................................................................................2512.003.00---2.00-------------------------------------------------------------------
.........................AGGGAGGAGCTGAGGCAAA................................................................................................................................................1912.002.001.00--------------1.00-------------------------------------------------------
...........CTGGAGAGCTCACCAGGGAGGAGCT........................................................................................................................................................2512.002.00-2.00---------------------------------------------------------------------
........................CAGGGAGGAGCTGAGGCAAATTG.............................................................................................................................................2312.002.002.00----------------------------------------------------------------------
..................................................GTGAGGGGCAGGGGAGAGAGAGGAAA................................................................................................................2612.002.00-------------------------------------------------1.00-----------1.00---------
..................................................GTGAGGGGCAGGGGAGAGA.......................................................................................................................1931.331.33----1.33------------------------------------------------------------------
.............................................................................................................................................AGGATTTCTACGAAAAGCTGGCATA......................251.000.00-1.00---------------------------------------------------------------------
............................GAGGAGCTGAGGCAAATTGCA...........................................................................................................................................2111.001.00---------------------------------1.00-------------------------------------
........................................................GGCAGGGGAGAGAGAGGAGT................................................................................................................201.000.00-------------------------1.00---------------------------------------------
.................................................................................................................................................................GCAGCTTCAATCGCCCCA.........1811.001.00--------------------------------------------------------1.00--------------
...............................................................GAGAGAGAGGAAATTCCACTG........................................................................................................211.000.00-----1.00-----------------------------------------------------------------
.............................AGGAGCTGAGGCAAATTGCAG..........................................................................................................................................2111.001.00-----------------------------1.00-----------------------------------------
........................CAGGGAGGAGCTGAGGCA..................................................................................................................................................1811.001.00-----------------------------------------------1.00-----------------------
..................................................GTGAGGGGCAGGGGAGAGAGAGGATGCT..............................................................................................................281.000.00------------1.00----------------------------------------------------------
...................CTCACCAGGGAGGAGCTGAGGCAAATCG.............................................................................................................................................281.000.00----------------------1.00------------------------------------------------
..............GAGAGCTCACCAGGGAGGAGC.........................................................................................................................................................2111.001.00-------------------------------------1.00---------------------------------
.............................AGGAGCTGAGGCAAATT..............................................................................................................................................1711.001.00----------------------------------------------------1.00------------------
...GTCTGGGGCTGGAGAGCTC......................................................................................................................................................................1911.001.00-------------------------------------------1.00---------------------------
.......................CCAGGGAGGAGCTGAGGCAAATTG.............................................................................................................................................2411.001.00----1.00------------------------------------------------------------------
.............................................................................................................................................AGGATTTCTACGAAAAGCT............................1911.001.001.00----------------------------------------------------------------------
..................................................GTGAGGGGCAGGGGAGAGAGAGGAA.................................................................................................................2511.001.00----------------------------------------------------------------1.00------
..................................................GTGAGGGGCAGGGGAGAGAGAGG...................................................................................................................2311.001.00------------1.00----------------------------------------------------------
..........................................................................................TAGCTCCCTTTTCCCTCAG...............................................................................191.000.00------1.00----------------------------------------------------------------
.........GGCTGGAGAGCTCACCAGGGAGGAGCTGAGG....................................................................................................................................................3111.001.001.00----------------------------------------------------------------------
..................................................GTGAGGGGCAGGGGAGAGAGAGGTTTT...............................................................................................................2711.001.00--------------------------------------------------1.00--------------------
..........................................................................................TAGCTCCCTTTTCCCCCACAAA............................................................................221.000.00-----1.00-----------------------------------------------------------------
..................................................GTGAGGGGCAGGGGAGCGAA......................................................................................................................201.000.00-----------------------------------------------------------1.00-----------
......................................................................................................................CAACCTTAACTTCTCTACAG..................................................2011.001.00---------------------------------------------------------1.00-------------
...........................................................................................................................................GGAGGATTTCTACGAAAAGCTGGCA........................2511.001.001.00----------------------------------------------------------------------
....................TCACCAGGGAGGAGCTGAGGCA..................................................................................................................................................2211.001.00-------------------------------1.00---------------------------------------
..........................................................................................................................CTTAACTTCTCTACACAA................................................181.000.00------------------------------------------1.00----------------------------
.....CTGGGGCTGGAGAGCTCACCAGGGAG.............................................................................................................................................................2611.001.00---------1.00-------------------------------------------------------------
.............GGAGAGCTCACCAGGGAGGAG..........................................................................................................................................................2111.001.00------------------------------------1.00----------------------------------
..........................................................................................TAGCTCCCTTTTCCCCCAGA..............................................................................2011.001.00---------------------1.00-------------------------------------------------
.................AGCTCACCAGGGAGGAGCTGAGGCAAACCG.............................................................................................................................................301.000.00----------------------1.00------------------------------------------------
..................................................................................................................................................TTCTACGAAAAGCTGGCAGCCTC...................231.000.00--------------------1.00--------------------------------------------------
.....................CACCAGGGAGGAGCTGAGGCAAA................................................................................................................................................2311.001.00--------------1.00--------------------------------------------------------
...GTCTGGGGCTGGAGAGCTCACCAGGGAGGAGCTG.......................................................................................................................................................3411.001.00---------------------------------------------------------------1.00-------
.........................AGGGAGGAGCTGAGGCAAACTGC............................................................................................................................................2311.002.00----------------1.00------------------------------------------------------
..................................................GTGAGGGGCAGGGGAGAGAGA.....................................................................................................................2111.001.00-----------------------------------------1.00-----------------------------
............TGGAGAGCTCACCAGGGAGGAGC.........................................................................................................................................................2311.001.00-------------------1.00---------------------------------------------------
.........................................................................................CTAGCTCCCTTTTCCCCCACAC.............................................................................221.000.00-----1.00-----------------------------------------------------------------
.......................CCAGGGAGGAGCTGAGGCAA.................................................................................................................................................2011.001.001.00----------------------------------------------------------------------
.................................................................GAGAGAGGAAATTCCACGT........................................................................................................191.000.00----------------------------------1.00------------------------------------
...................................................TGAGGGGCAGGGGAGAGAGAG....................................................................................................................2111.001.00---------------------1.00-------------------------------------------------
.............................AGGAGCTGAGGCAAATTTT............................................................................................................................................1911.001.001.00----------------------------------------------------------------------
.........................AGGGAGGAGCTGAGGCAA.................................................................................................................................................1811.001.00--------------------------1.00--------------------------------------------
.........................................................................................................................................GAGGAGGATTTCTACGAAAAGC.............................2211.001.00------------------------1.00----------------------------------------------
............TGGAGAGCTCACCAGGGAGGAG..........................................................................................................................................................2211.001.00--------------1.00--------------------------------------------------------
......TGGGGCTGGAGAGCTCACC...................................................................................................................................................................1911.001.00----------------------------------------1.00------------------------------
......................ACCAGGGAGGAGCTGAGGCAAACTG.............................................................................................................................................251.000.00----------------1.00------------------------------------------------------
......................ACCAGGGAGGAGCTGATGAT..................................................................................................................................................201.000.00------------------------------------------------------------1.00----------
........................................................................................................................................AGAGGAGGATTTCTATAG..................................181.000.00------1.00----------------------------------------------------------------
..............................................................................................................AAATAAAACAACCTTCTA............................................................181.000.00------1.00----------------------------------------------------------------
......TGGGGCTGGAGAGCTCACCAGGGAGGAG..........................................................................................................................................................2811.001.00----------1.00------------------------------------------------------------
.........................AGGGAGGAGCTGAGGCACTGC..............................................................................................................................................211.000.00--------------------1.00--------------------------------------------------
..............GAGAGCTCACCAGGGAGGAGA.........................................................................................................................................................211.000.00-----------------------------------1.00-----------------------------------
.................AGCTCACCAGGGAGGAGCTGAGGCAAACTCC............................................................................................................................................311.000.00------------------------------------------------1.00----------------------
...GTCTGGGGCTGGAGAGC........................................................................................................................................................................1730.670.67--------------------------------------------------------------------0.330.33-
..........................................................................................TAGCTCCCTTTTCCCCCAG...............................................................................1920.500.50------0.50----------------------------------------------------------------
..........................................................................................TAGCTCCCTTTTCCCCCAGTA.............................................................................2120.500.50------0.50----------------------------------------------------------------
......................ACCAGGGAGGAGCTGAGGC...................................................................................................................................................1920.500.50-------------------------------------------------------------------0.50---
..........................................................................................TAGCTCCCTTTTCCCCCAGT..............................................................................2020.500.50------------------------------------------------------------------0.50----
......................ACCAGGGAGGAGCTGAG.....................................................................................................................................................1750.200.20----------------------------------------------------------------------0.20

Antisense strand
TGAGTCTGGGGCTGGAGAGCTCACCAGGGAGGAGCTGAGGCAAATTGCAGGTGAGGGGCAGGGGAGAGAGAGGAAATTCCGTTTACATCCTAGCTCCCTTTTCCCCCAGAAAATAAAACAACCTTAACTTCTCTACAGAGGAGGATTTCTACGAAAAGCTGGCAGCTTCAATCGCCCCAGAAATATAC
...................................................((.((((.(((((.(((..((((.............))))..)))))))).))))))................................................................................
..................................................51.............................................................114........................................................................
SizePerfect hitTotal NormPerfect NormSRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR343336SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040041(GSM532926)
G612T. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532878(GSM532878)
G691T. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040029(GSM532914)
G026T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
..............GAGAGCTCACCAGGGGC............................................................................................................................................................. 173.000.00-------------1.00--------------------------------1.00------1.00-----------------
...............................................................................................................................TCGTAGAAATCCTCCTCTGTAGAGAAG.................................. 2713.003.00-------3.00---------------------------------------------------------------
..................................................................................................................................AATCCTCCTCTGTAGAG......................................... 1711.001.00---------------------------------------1.00-------------------------------
.................................................CTCTCCCCTGCCCCTCACC........................................................................................................................ 1930.670.67-----------------------------------------------------------------0.67-----