ID: uc003urp.2_intron_4_0_chr7_99260506_r.3p
GENE: (4)
chr7:99260456-99260705-


(1)
BREAST 		(3)
CELL-LINE 		(2)
CERVIX 		(9)
LIVER 		(3)
OTHER 		(7)
SKIN

Sense strand
TTGTTTCAGGAAAACATCCTGCTTTCCAAGGATTTAGATGAATGTTTTTGTTCACTGGTGACTCAGGTAACACGTCTTCAAGAAGCCATAGGGAGGTTGAGGGAGGGAAGTCAAGAAGGGAGGTTGAGGACTGCACTTTTGATTTACTTCTGACTTCACGAGTCACTTTCTGCCAAAGAAATCTCTCCTTTTGCTTCTAGCACCGACTAGATTTCCTTCAGCTGATGATTGACTCCCAGAATTCGAAAGA
......................................................................................................................((((((.(((((....................((((((...)))))).(((((.....)))))....)))))..))))))....................................................
............................................................................................................109........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784
.................................................................................................................AGAAGGGAGGTTGAGGACT......................................................................................................................19219.5019.5012.003.50-2.501.00----------------0.50---
.................................................................................................................AGAAGGGAGGTTGAGGAC.......................................................................................................................1827.007.004.502.00-0.50---------------------
................................................................................................................AAGAAGGGAGGTTGAGGAC.......................................................................................................................1915.005.004.001.00-----------------------
.................................................................................................................AGAAGGGAGGTTGAGGACTGCACT.................................................................................................................2425.005.003.002.00-----------------------
................................................................................................................AAGAAGGGAGGTTGAGGA........................................................................................................................1833.333.331.001.67--0.33-----------------0.33--
................................................................................................................AAGAAGGGAGGTTGAGGACTGCAC..................................................................................................................2412.002.002.00------------------------
................................................................................................................AAGAAGGGAGGTTGAGGACTG.....................................................................................................................2112.002.002.00------------------------
..........................................................................................................................................................................................................................CAGCTGATGATTGACTCCCAGAA.........2312.002.001.00-1.00----------------------
.................................................................................................................AGAAGGGAGGTTGAGGACTGCAC..................................................................................................................2321.501.500.500.50-0.50---------------------
.............................................................................................................................GAGGACTGCACTTTTGATTTACTTCTGACT...............................................................................................3011.001.00---------------1.00---------
...........................................................................................................................................................................................................................AGCTGATGATTGACTCCCAGAA.........2211.001.00-----1.00-------------------
.................................................................................................................AGAAGGGAGGTTGAGTGC.......................................................................................................................181.000.001.00------------------------
.........................................................................................................................................................................................................................TCAGCTGATGATTGACTCCCAGAA.........2411.001.00--1.00----------------------
......................................................................................................................................................................................CTCTCCTTTTGCTTCTAGCACCGAC...........................................2511.001.001.00------------------------
...............................................................................................................................................................................................................................GATGATTGACTCCCAGAATTCGA....2311.001.00-1.00-----------------------
.................................................................................................................................................................................................................................TGATTGACTCCCAGAATTCGAA...2211.001.00--1.00----------------------
.............................................................................................................................................................................CAAAGAAATCTCTCCTTTTGGGCT.....................................................241.000.00--------------1.00----------
............................................................................................................AGTCAAGAAGGGAGGTTGAGGACTGCACTT................................................................................................................3011.001.00---------1.00---------------
......................................................................................................................................ACTTTTGATTTACTTTATG.................................................................................................191.000.00--------------------1.00----
.................................................................................................................................................................................................................................TGATTGACTCCCAGAATTCGT....211.000.00--1.00----------------------
........................TCCAAGGATTTAGATGAATGT.............................................................................................................................................................................................................2111.001.00------1.00------------------
.......................................GAATGTTTTTGTTCAAATG................................................................................................................................................................................................191.000.00-------1.00-----------------
....................................................................................................................AGGGAGGTTGAGGACTGCACTTT...............................................................................................................2311.001.001.00------------------------
................................................................................................................AAGAAGGGAGGTTGAGGACTGCACT.................................................................................................................2511.001.001.00------------------------
................................................................................................................AAGAAGGGAGGTTGAGGACTGCA...................................................................................................................2311.001.00-1.00-----------------------
............................................................................................................................................................................................................................GCTGATGATTGACTCCCAGAA.........2111.001.00--1.00----------------------
.......................................................................................................................GAGGTTGAGGACTGCACT.................................................................................................................1821.001.001.00------------------------
.................................................................................................................AGAAGGGAGGTTGAGGACTGCA...................................................................................................................2221.001.001.00------------------------
...........................................................................................GGAGGTTGAGGGAGGGAA.............................................................................................................................................1811.001.00----1.00--------------------
.................................................................................................................AGAAGGGAGGTTGAGGACTGCACTTTT..............................................................................................................2711.001.001.00------------------------
.............................................................................................................................................................................CAAAGAAATCTCTCCAGG...........................................................181.000.00----------1.00--------------
...........................................GTTTTTGTTCACTGGGGGG............................................................................................................................................................................................191.000.00------------1.00------------
...........................................................................................................................................................................................................................AGCTGATGATTGACTCCCAGA..........2111.001.00--1.00----------------------
...............................................................................................................................................................................................................................GATGATTGACTCCCAGAATTCGAAAG.2611.001.001.00------------------------
.................................................................................................................................................................................................................................TGATTGACTCCCAGAATTCGC....211.000.00-1.00-----------------------
...............................................................................................................................................................................................................................GATGATTGACTCCCAGAATTCGAA...2411.001.00----1.00--------------------
..................................................................................................................GAAGGGAGGTTGAGGGCT......................................................................................................................181.000.00--------1.00----------------
............................................................................................................AGTCAAGAAGGGAGGTTGAG..........................................................................................................................2011.001.00-----1.00-------------------
..........................................................................................................................................................................................................CCGACTAGATTTCCTTCAGCT...........................2111.001.00-1.00-----------------------
.....................................................ACTGGTGACTCAGGTAACACGTCTTCA..........................................................................................................................................................................2711.001.00-----------1.00-------------
.................................................................................................................................................................................................................................TGATTGACTCCCAGAATTCGA....2111.001.00--1.00----------------------
.....................................................................................CCATAGGGAGGTTGAGGGAGGG...............................................................................................................................................2211.001.001.00------------------------
........................................................................................................................................................................................................................TTCAGCTGATGATTGACT................1830.670.67-0.67-----------------------
.................................................................................................................AGAAGGGAGGTTGAGGACTGC....................................................................................................................2120.500.500.50------------------------
....................................................................................................................AGGGAGGTTGAGGACTGCAC..................................................................................................................2020.500.500.50------------------------
...................................................................................................................AAGGGAGGTTGAGGACTGCACT.................................................................................................................2220.500.50-----0.50-------------------
.................................................................................................................AGAAGGGAGGTTGAGGACTG.....................................................................................................................2020.500.500.50------------------------
.................................................................................................................................................................................................................GATTTCCTTCAGCTGATGAT.....................2030.330.33-0.33-----------------------

Antisense strand
TTGTTTCAGGAAAACATCCTGCTTTCCAAGGATTTAGATGAATGTTTTTGTTCACTGGTGACTCAGGTAACACGTCTTCAAGAAGCCATAGGGAGGTTGAGGGAGGGAAGTCAAGAAGGGAGGTTGAGGACTGCACTTTTGATTTACTTCTGACTTCACGAGTCACTTTCTGCCAAAGAAATCTCTCCTTTTGCTTCTAGCACCGACTAGATTTCCTTCAGCTGATGATTGACTCCCAGAATTCGAAAGA
......................................................................................................................((((((.(((((....................((((((...)))))).(((((.....)))))....)))))..))))))....................................................
............................................................................................................109........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784
...............................................................................................................................................................................................................TCAGCTGAAGGAAATCTA......................... 1811.001.00----------------1.00--------
.....................................................................................................................................................................................................CTGAAGGAAATCTAGTCGGTGCTA............................. 2411.001.00-------------------1.00-----
....................................................................................................................................................................................................GAAATCTAGTCGGTGCTAG................................... 1911.001.00-------------1.00-----------
...............................................................................................................................................................................................TGCTTCTAGCACCGACTGAC....................................... 201.000.00------------------1.00------
..................................................................................................CTCCCTTCTTGACTTCCCTCCCTC................................................................................................................................ 2411.001.00-----------------1.00-------
..........................................................................................TCCCTCCCTCAACCTCCC.............................................................................................................................................. 1830.330.33-----------------------0.33-
...............................................................................................................TCAACCTCCCTTCTTG........................................................................................................................... 1650.200.20------------------------0.20