ID: uc003upz.5
GENE: ARPC1B(6)
chr7:98988673-98988850+


(1)
AGO1.ip 		(4)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(15)
BREAST 		(48)
CELL-LINE 		(2)
CERVIX 		(3)
FIBROBLAST 		(2)
HEART 		(8)
HELA 		(8)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(33)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTAAGCCACGACAGCACCGTCTGCCTGGCTGATGCCGACAAGAAGATGGCGTGAGTCGAGGCCATCCCCAGGGGAGGAGGTGAGTGCAGAGGAGTGGGACACCGTGACTCACAGCTCTCTCCCCTCAGCGTCGCGACTCTGGCCTCTGAAACACTACCACTGCTGGCGCTGACCTTCA
......................................................................((((.(((((.((((...(((..((((....))))..)))...)))))))))))))....................................................
..............................................................63...............................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189784SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR029127(GSM416756)
A549. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029131(GSM416760)
MCF7. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
...................................................................CCAGGGGAGGAGGTGAGTGCAG.........................................................................................22128.0028.005.003.008.00--1.00--1.00--2.00---1.00-------1.001.00----------1.00-----------1.00--------1.00----------1.00-----------------------------------1.00--------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAG.........................................................................................21117.0017.00-1.00--------------1.00--1.00-1.00--1.00---1.00-1.00-------1.00---1.00-----1.001.001.00----1.00-----------------------------------------1.00-------------1.001.00------------------1.00----
........................................................................................................TGACTCACAGCTCTCTCCCCTCAG..................................................24113.0013.001.00-1.004.00-1.00-1.001.00--1.00---1.00------------------------------------------------------1.00---------------------------------------------1.00-------------------
..................................................................CCCAGGGGAGGAGGTGAGTGC...........................................................................................21113.0013.008.00--------------------------1.001.00----------1.00--------------1.00---------------------------------------1.00-----------------------------------------
..................................................GTGAGTCGAGGCCATCCCCAGGGGAGGAGGTGAGTGCAGAGGAGTGGGACACCGTGACTCACAGCTCTCTCCCCTCAG..................................................78113.0013.00----12.00--------------------------------------------------------------------------------------------------------------1.00--------------------
...................................................................CCAGGGGAGGAGGTGAGTGC...........................................................................................20113.0013.002.00-8.00----------2.00--------------------------------------------------------------------------------------------------------------------1.00-----
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGT.................................................25112.0013.00--1.002.00-1.00---------1.00--------------1.00-----1.001.00--------------------------------------------1.00--1.00----------------1.00--------------------1.00------------
...................................................................CCAGGGGAGGAGGTGAGTGCA..........................................................................................21110.0010.00-2.003.00--1.00-----------------1.00--------1.00------------------------1.001.00-----------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGC...........................................................................................19110.0010.003.00-------2.00----1.00---1.00-----------------1.00---------------1.00----------------------------1.00-------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGT.................................................21110.003.001.00--1.00------------------1.00------2.00--------------------------------------------1.00------1.00-----1.00-------------------------1.00----------1.00-----------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGAA................................................288.000.00-8.00--------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGA........................................................................................2317.007.00----------5.00------1.00---------------------------------------------------------------------------------------------------------------1.00------
....................................................................CAGGGGAGGAGGTGAGTGCAGT........................................................................................2216.0017.001.001.00----3.00----------------------------------------------------------------------------------------------------------------------1.00----------
...................................................................CCAGGGGAGGAGGTGAGTGA...........................................................................................2016.001.00---------6.00------------------------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGA.................................................2516.0013.005.00-------------------------1.00-------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGTAA......................................................................................2415.0017.005.00---------------------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCA..........................................................................................2015.005.00-------------------1.00---1.00----------------------1.00-----1.00-------------------------1.00---------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAG.........................................................................................2315.005.00-4.00------------------------------------------------------------------------------------------------------------------------------------1.00-
........................................................................................................TGACTCACAGCTCTCTCCCCTCA...................................................2314.004.00---2.00-1.00--------------------------------------------------------------------------------------------------1.00-------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGA.................................................2114.003.00-------1.00------------------------------1.00-----1.00-----1.00-------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCT.....................................................2314.004.00--------1.00-----------------1.00----------------------------------------------------1.00--------------------------1.00-----------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAG..................................................2314.004.00---2.00---------------------------1.00---------------------------1.00----------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAT..................................................2613.001.003.00---------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAA.........................................................................................2213.0010.00--2.00-------------------------------------------------------1.00-----------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCA..........................................................................................2213.003.002.00--------------------------------------------------------1.00------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAG..................................................2513.003.00--------1.00--1.00-------------------1.00--------------------------------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCA...................................................2413.003.00---1.00------------------------1.00-------------------------------------------------------------------------------------------------1.00---------
.........................................................................................AGGAGTGGGACACCGTGACTC....................................................................2113.003.00------3.00---------------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAA.........................................................................................2113.005.00-----------------------------------------2.00--------------------1.00-------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGT........................................................................................2313.0028.00-1.00----1.001.00--------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAG..................................................2013.003.002.00--1.00------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................AACACTACCACTGCTGGCGCTGA......2313.003.00------------3.00---------------------------------------------------------------------------------------------------------------------------
..........................................................................................................ACTCACAGCTCTCTCCCCTCAGT.................................................233.000.003.00---------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGAA................................................2612.0013.00--------------------2.00-------------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTC....................................................2212.002.001.00------------1.00--------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................CACTACCACTGCTGGCGCTGACCT...2412.002.00------------2.00---------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGA........................................................................................2212.002.00-1.00---------------1.00----------------------------------------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGTA................................................2212.003.00-----------------------------------------------------------------------------------------------------1.00--------------------------1.00-------
........................................................................................................TGACTCACAGCTCTCTCCCA......................................................202.000.00----------------------------------2.00-----------------------------------------------------------------------------------------------------
.............GCACCGTCTGCCTGGCTGATGCCGAC...........................................................................................................................................2612.002.00----------------------------------------------------------------------------------------1.00----1.00------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGA...........................................................................................192.000.00---------------------------2.00------------------------------------------------------------------------------------------------------------
.......................................................................................................................................ACTCTGGCCTCTGAATCCA........................192.000.00---------1.00-------------------------------------------------------------------------------------------------1.00----------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAT.........................................................................................2312.003.00-----------------------------------------------1.00---------------------------1.00------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGAA..........................................................................................202.000.00----------------------------------------------------1.00-----------------------------------------------1.00-----------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCC......................................................2212.002.00---------------------------------------1.00--------------------------------------------------1.00---------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGTT.......................................................................................2412.0028.00-2.00--------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGAAA......................................................................................2512.007.00-1.00-----1.00--------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................AAACACTACCACTGCTGGCGCTG.......2312.002.00-------------------------1.00------------------------------------------------------------------1.00-------------------------------------------
..................................................................................................ACACCGTGACTCACAGACAA............................................................202.000.00------------------2.00---------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGTAT......................................................................................2612.005.00-2.00--------------------------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGA........................................................................................2412.002.00-1.00----------------------------------------------------------------------------------1.00---------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAT.......................................................................................2312.002.00---------------------------------1.00--------1.00---------------------------------------------------------------------------------------------
.............................TGATGCCGACAAGAAGATGGC................................................................................................................................2111.001.00------------------------------------------------------------------1.00---------------------------------------------------------------------
.....................................................................................................................................................AACACTACCACTGCTGGCGCTGACCTTCACC311.000.00---------------------------------------------1.00------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGA.................................................271.000.00-----1.00----------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................TCGCGACTCTGGCCTCTGAAACACTAC.....................2711.001.00-----------------------------------------------------------1.00----------------------------------------------------------------------------
....................................................................................................................................GCGACTCTGGCCTCTGAA............................1811.001.00--------------------------------------------------------------------------------------------------------------------------1.00-------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAT..................................................2411.004.00-------------------------------------------------------------1.00--------------------------------------------------------------------------
.................................................................................................................................GTCGCGACTCTGGCC..................................1511.001.00----------------------------------------------------------------------------------------------------------------------1.00-----------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGAA.......................................................................................2411.007.00--------------1.00-------------------------------------------------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAGAA................................................2711.003.00--------------------1.00-------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGT........................................................................................2411.005.00----------------------------------------------1.00-----------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCCGA.................................................211.000.00-----------------------------------------------------------------1.00----------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGAAAG..............................................2411.003.00------------------------------------------------------------------------------------------------------------1.00---------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGTTT......................................................................................2411.0017.00--------------------------------------------------------------------1.00-------------------------------------------------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAGTAA...............................................2611.004.00---1.00------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................AACACTACCACTGCTGGCGCTGACCTTC.2811.001.00---------------------------------1.00------------------------------------------------------------------------------------------------------
..........ACAGCACCGTCTGCCCGGC.....................................................................................................................................................191.000.00-------------------------------------------------------------------------1.00--------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGCA................................................281.000.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGAT.......................................................................................2411.007.00-------------------------------------------------------------------------------------------------------------------------1.00--------------
............................................................................................................TCACAGCTCTCTCCCCTCATT.................................................211.000.00--------------------------------------------1.00-------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTGT...................................................2511.004.00--------1.00-------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................CCTCTGAAACACTACCACTGCT..............2211.001.00---------------------------------------------------------------1.00------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCTCAGTAA...............................................2311.003.00-------------------------------------------------------------------------------------------------------------1.00--------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGAA..........................................................................................221.000.00-------------------------------------------------1.00--------------------------------------------------------------------------------------
....................................................................................................................................GCGACTCTGGCCTCTGAAACAC........................2211.001.00--------------------------------------------------------1.00-------------------------------------------------------------------------------
.....................................................................................................................................CGACTCTGGCCTCTGAAACACTACCACTGCTG.............3211.001.00------------------------------------------------------------------------------------------------------------------1.00---------------------
..........................................................................................................................................CTGGCCTCTGAAACACTACC....................2011.001.00-------------------------------------------------------------------------------------------------------------------------------1.00--------
............AGCACCGTCTGCCTGGCTGA..................................................................................................................................................2011.001.00--------------------------------------------------------------------------------------------------1.00-------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCC.......................................................2111.001.00-----1.00----------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................CACTACCACTGCTGGCGCTG.......2011.001.00----------------------------------------------------------------------------1.00-----------------------------------------------------------
..........................................................................................................ACTCACAGCTCTCTCCCCTCAGA.................................................231.000.00---------------1.00------------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAAT........................................................................................2311.0010.00------------------------1.00---------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAGTTC......................................................................................2511.0028.00---------------------1.00------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGAAACACTACCACTGCTGGCGCTGACC....2811.001.00-------------------------1.00--------------------------------------------------------------------------------------------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAGT.................................................2411.004.00---1.00------------------------------------------------------------------------------------------------------------------------------------
.TAAGCCACGACAGCACCGTCTGCCTGGCTGA..................................................................................................................................................3111.001.00----------------1.00-----------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCC........................................................2011.001.00---------------------------------------------------------------------------------------------------------------------1.00------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAGT.................................................271.000.00-----------1.00----------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................ACTACCACTGCTGGCGCTG.......1911.001.00------------------------------------------------------------1.00---------------------------------------------------------------------------
.....................................................................................GCAGAGGAGTGGGACACCGTGAC......................................................................2311.001.00----------------------------------------------------------------1.00-----------------------------------------------------------------------
...................................................................................................................................CGCGACTCTGGCCTC................................1511.001.00-------------------------------------------------------------------------------------------------------------------------------------1.00--
........................................................................................................TGACTCACAGCTCTCTCCCCTCCG..................................................2411.002.00---------------------------------------------------------------------1.00------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAGATAG..............................................2911.003.00---------------------------------------------------------------------------------------------------------1.00------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCT...................................................2311.002.00---1.00------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................CTGAAACACTACCACTGCTGG............2111.001.00----------------------1.00-----------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAATT.......................................................................................2311.005.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
..........................................................................AGGAGGTGAGTGCAGAGACG....................................................................................201.000.00----------------------------------------1.00-----------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCGA.....................................................2311.001.00--------------------------1.00-------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGT...........................................................................................2011.001.00------------------------------------------------------------------------------------------------1.00---------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTGCAAAT.......................................................................................2411.0010.00------------------------------------------------------1.00---------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTC....................................................2411.001.00---------------------1.00------------------------------------------------------------------------------------------------------------------
..............................GATGCCGACAAGAAGATG..................................................................................................................................1811.001.00--------------------------------1.00-------------------------------------------------------------------------------------------------------
.......................................................................................................................................ACTCTGGCCTCTGAACCC.........................181.000.00------------------1.00---------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTTT...................................................2511.004.00-------------------------------------------1.00--------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTT....................................................2411.004.00-----------------------------------------------------------------------------------------------1.00----------------------------------------
......CACGACAGCACCGTCTGCCTGGC.....................................................................................................................................................2311.001.00-------------------------1.00--------------------------------------------------------------------------------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGAT................................................2611.0013.00-----------------------------------------------------------------------------------------1.00----------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAAA......................................................................................2411.002.00--------------1.00-------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCCT..................................................2611.001.00-------1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................................GTGCAGAGGAGTGGGACA.............................................................................1811.001.00-------------------------------------------------------------------------------------------1.00--------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAATA.......................................................................................2511.003.00----------------------1.00-----------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCAA..................................................2611.001.00-----------------------------------------------------1.00----------------------------------------------------------------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAT..................................................2511.003.00---1.00------------------------------------------------------------------------------------------------------------------------------------
..............................GATGCCGACAAGAAGCTCA.................................................................................................................................191.000.00-------------------------------------------------------1.00--------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAG.......................................................................................2311.001.00--------------1.00-------------------------------------------------------------------------------------------------------------------------
..........ACAGCACCGTCTGCCTGGCTGATG................................................................................................................................................2411.001.00--1.00-------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................CTACCACTGCTGGCGCTGACCTTC.2411.001.00----------------1.00-----------------------------------------------------------------------------------------------------------------------
...................................................................CCAGGGGAGGAGGTGAGTG............................................................................................1911.001.00------------------------------------------------1.00---------------------------------------------------------------------------------------
............................................................................................................TCACAGCTCTCTCCCCGCAG..................................................201.000.00---1.00------------------------------------------------------------------------------------------------------------------------------------
...AGCCACGACAGCACCGTCTGC..........................................................................................................................................................2111.001.00------------------------------------------------------------------------1.00---------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCA...................................................2511.001.00--------------------------------------------------------------------------------------1.00-------------------------------------------------
..............................GATGCCGACAAGAAGATGGCC...............................................................................................................................211.000.00------------------------------------------------------------------------------------------------------------------------1.00---------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCAGAGA...............................................2711.0013.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
.....................................................................AGGGGAGGAGGTGAGTGCAG.........................................................................................2011.001.00--------------------------------------------------------------------------------------------------------------1.00-------------------------
.......................................................................................................GTGACTCACAGCTCTCTCCCCTCAGA.................................................2611.003.00-------1.00--------------------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAAC........................................................................................2411.003.00-------------------------------------1.00--------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCGG....................................................2411.002.00-----1.00----------------------------------------------------------------------------------------------------------------------------------
..........ACAGCACCGTCTGCCTGGCTGA..................................................................................................................................................2211.001.00------------------------------------1.00---------------------------------------------------------------------------------------------------
.......................................................................................................................................ACTCTGGCCTCTGAATCC.........................181.000.00-----------------------------------------------------------------------------------------------------------------------1.00----------------
...................................................................CCAGGGGAGGAGGTGAGTGCCG.........................................................................................2211.0013.00-----------------------------------------------------------------------1.00----------------------------------------------------------------
................................................................................................................................................TCTGAAACACTACCACTGCTGGC...........2311.001.00-----------------------------------------------------------------------------1.00----------------------------------------------------------
.........................................................................................................GACTCACAGCTCTCTCCCCTCAGATA...............................................2611.004.00---------------------------------------------------------------------------------------------------1.00------------------------------------
........................................................................................................TGACTCACAGCTCTCTCCCCTCATTA................................................2611.004.00---1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAGTT.......................................................................................2511.005.00-------1.00--------------------------------------------------------------------------------------------------------------------------------
......................................................................................................CGTGACTCACAGCTCTCTCCCCTCT...................................................2511.001.00-------------------------------------------1.00--------------------------------------------------------------------------------------------
............AGCACCGTCTGCCTGGCTGATGCCGATA..........................................................................................................................................281.000.00-----------------------------------------------------1.00----------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGTGCAGAGGA.....................................................................................2511.001.00-----------------------------------------------------------------------------------1.00----------------------------------------------------
..................................................................CCCAGGGGAGGAGGTGAGTGCAAA........................................................................................2411.003.00--------------1.00-------------------------------------------------------------------------------------------------------------------------
....................................................................CAGGGGAGGAGGTGAGT.............................................................................................1720.500.50--0.50-------------------------------------------------------------------------------------------------------------------------------------
.............................................................CCATCCCCAGGGGAGG.....................................................................................................1640.250.25---------------------------------------------------------------------------------------------------------------------------------------0.25
............................................................................................................TCACAGCTCTCTCCCCT.....................................................1740.250.25-----------------------------0.25----------------------------------------------------------------------------------------------------------
...................................................................................................................................................GAAACACTACCACTG................1550.200.20------------------------------------------------------------0.20---------------------------------------------------------------------------

Antisense strand
GTAAGCCACGACAGCACCGTCTGCCTGGCTGATGCCGACAAGAAGATGGCGTGAGTCGAGGCCATCCCCAGGGGAGGAGGTGAGTGCAGAGGAGTGGGACACCGTGACTCACAGCTCTCTCCCCTCAGCGTCGCGACTCTGGCCTCTGAAACACTACCACTGCTGGCGCTGACCTTCA
......................................................................((((.(((((.((((...(((..((((....))))..)))...)))))))))))))....................................................
..............................................................63...............................................................128................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189782DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR189784SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR029127(GSM416756)
A549. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191510(GSM715620)
158genomic small RNA (size selected RNA from . (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029131(GSM416760)
MCF7. (cell line)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
.............................ATCTTCTTGTCGGCATCA................................................................................................................................... 1811.001.00---------------------------------------------------1.00------------------------------------------------------------------------------------
...........................................................................................................CTCACAGCTCTCTCCCCTCAGCGTCC............................................. 261.000.00----------------------------------------1.00-----------------------------------------------------------------------------------------------
......GCAGACGGTGCTGTCGTG.......................................................................................................................................................... 1811.001.00-------------------1.00--------------------------------------------------------------------------------------------------------------------
...............................................................................................................CAGCTCTCTCCCCTCAGCGTCGAG........................................... 241.000.00---------------------------------------------1.00------------------------------------------------------------------------------------------
..AGGCAGACGGTGCTGTCGTGGCTT........................................................................................................................................................ 2411.001.00------------------------------------------------------------------------------------------------------------------------------------1.00---