ID: uc003uon.2_intron_1_0_chr7_96651682_r.5p
GENE: (1)
chr7:96653381-96653630-


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(11)
BRAIN 		(14)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(8)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(6)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCAGTACGGCGGCGCCTACAACCGCGTCCCAAGCGCCACCAACCAGCCAGGTACATGGACAGGGGGAAGGCTGGGCAGATACAGGGCGACTAGGACGCTGGGGGCGCGAGATGGGGTGGTAGATTGGGGGTCACAGCGGTTCACGGCAGTGGGGGCGCACGCGGCAGAAGGGAGTAGGACTCAGACCCTCCAACAAAGAGAGTTTCTCGGGCCAGCATTTTAGGGATTTTTAGTAGGAGAGCCCTGTGGA
...................................................................................................................((.((.(((.....)))...(((.(((((....))).)).)))..)).))......(((.....)))....................................................................
..........................................................................................................107...........................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR189784TAX577742(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189787SRR189783SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040015(GSM532900)
G623T. (cervix)		TAX577590(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................TGGGGTGGTAGATTGGATAG.......................................................................................................................2014.000.0010.00------2.00--------------1.00--1.00----------------------------
...............................................................................................................TGGGGTGGTAGATTGGGTAGT......................................................................................................................217.000.00--2.00--2.00----------1.00-1.00--------1.00--------------------------
...............................................................................................................TGGGGTGGTAGATTGGATTG.......................................................................................................................204.000.00-1.001.00---------1.00--1.00--------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGATAT.......................................................................................................................204.000.001.001.00--------1.00---------------------------1.00---------------
...............................................................................................................TGGGGTGGTAGATTGTAT.........................................................................................................................1873.140.140.140.140.140.140.430.14---0.29-0.14-------0.14------------0.71---------0.140.290.14--0.14------
...............................................................................................................TGGGGTGGTAGATTGGAGAG.......................................................................................................................203.000.00--1.00----1.00-----------------------------1.00----------------
...............................................................................................................TGGGGTGGTAGATTGGATA........................................................................................................................193.000.00-1.00----1.00-----1.00-----------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGATT........................................................................................................................193.000.00---1.00--1.00-------1.00---------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGAT.........................................................................................................................183.000.00---1.00-------1.00-----1.00------------------------------------
...............................................................................................................TGGGGTGGTAGATTGTATA........................................................................................................................1972.570.140.140.29-0.570.29---0.140.14------0.290.29------------------------0.140.14------0.14---
...............................................................................................................TGGGGTGGTAGATTGGGTCGT......................................................................................................................212.000.00----------1.00----------1.00--------------------------------
...............................................................................................................TGGGGTGGTAGATTGGATTT.......................................................................................................................202.000.001.00--------------1.00--------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGTTTG.......................................................................................................................202.000.001.001.00----------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGGCAGT......................................................................................................................212.000.001.00----1.00------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGTTAG.......................................................................................................................202.000.001.00-----1.00-----------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGA..........................................................................................................................172.000.00--------1.00-------------------1.00-------------------------
................................................................................................................GGGGTGGTAGATTGGATAG.......................................................................................................................192.000.001.00-------1.00---------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGTA..........................................................................................................................1771.710.14-----0.14--0.43-0.14-------0.14-----------------------0.29----0.140.140.14-0.14--
.......................................................................................................................................................................AAGGGAGTAGGACTCAGACCCTCCAACAAAGAGA.................................................3411.001.00---------------------------------------1.00--------------
.................................................................................................................................................................CGGCAGAAGGGAGTAGGACT.....................................................................2011.001.00----------------------------------------1.00-------------
.............................................................................................................................................................................................................................AGGGATTTTTAGTAGGAGAGT........211.000.00----1.00-------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGGG.........................................................................................................................1811.001.00-----------------------------1.00------------------------
...............................................................................................................TGGGGTGGTAGATTGGTTAT.......................................................................................................................201.000.00---1.00--------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGGTCT.......................................................................................................................201.000.00---------1.00--------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGAATG.......................................................................................................................201.000.001.00-----------------------------------------------------
.....................................................................................................................................................................AGAAGGGAGTAGGACTCAG..................................................................1911.001.00--------------------------1.00---------------------------
...............................................................................................................TGGGGTGGTAGATTGGAG.........................................................................................................................181.000.00-----------1.00------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGGTAAC......................................................................................................................211.000.00--1.00---------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGACAG.......................................................................................................................201.000.00---------1.00--------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGTTT........................................................................................................................191.000.001.00-----------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGTGTT.......................................................................................................................201.000.00-----------------------1.00------------------------------
...............................................................................................................TGGGGTGGTAGATTGGTTTT.......................................................................................................................201.000.00-1.00----------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGGTG........................................................................................................................191.000.00--------------1.00---------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGGTATT......................................................................................................................211.000.00-------------------1.00----------------------------------
.....................................................................................GCGACTAGGACGCTGGG....................................................................................................................................................1711.001.00------------------------------1.00-----------------------
..........................................................ACAGGGGGAAGGCTGGTAA.............................................................................................................................................................................191.000.00-----------------------------------1.00------------------
...............................................................................................................TGGGGTGGTAGATTGGGTCA.......................................................................................................................201.000.00----1.00-------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGATGG.......................................................................................................................201.000.001.00-----------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGGAGT........................................................................................................................191.000.00---1.00--------------------------------------------------
...............................................................................................................................................................CGCGGCAGAAGGGAGTG..........................................................................171.000.00----1.00-------------------------------------------------
............................................................................AGATACAGGGCGACTAGG............................................................................................................................................................1811.001.00---------------------------------1.00--------------------
...............................................................................................................TGGGGTGGTAGATTGGGTAG.......................................................................................................................201.000.00--------------------1.00---------------------------------
...........................................................................................AGGACGCTGGGGGCGAGGA............................................................................................................................................191.000.00-------------------------------1.00----------------------
...............................................................................................................TGGGGTGGTAGATTGGAAGG.......................................................................................................................201.000.001.00-----------------------------------------------------
..................................................GTACATGGACAGGGGGAAGGCTGGGCAGA...........................................................................................................................................................................2911.001.00----------------------------------1.00-------------------
...............................................................................................................TGGGGTGGTAGATTGTATT........................................................................................................................1970.710.14-0.29-0.14----------------------------0.14---------0.14-----------
...............................................................................................................TGGGGTGGTAGATTGTG..........................................................................................................................1770.570.14----------------0.14--0.14------------0.14-----------0.14---------
...............................................................................................................TGGGGTGGTAGATTGTTTT........................................................................................................................1970.430.14-0.14-0.29--------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGTGT.........................................................................................................................1870.430.140.14--------------------0.140.14-------------------------------
.......................................................................TGGGCAGATACAGGGC...................................................................................................................................................................1630.330.33---------------------------------------------0.33--------
............................................................AGGGGGAAGGCTGGGCA.............................................................................................................................................................................1730.330.33----------------------------------------------0.33-------
...............................................................................................................TGGGGTGGTAGATTGTAG.........................................................................................................................1870.290.14------0.14------------------------------------0.14----------
...............................................................................................................TGGGGTGGTAGATTGTGC.........................................................................................................................1870.140.140.14-----------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTG............................................................................................................................1570.140.14--------------------0.14---------------------------------
...............................................................................................................TGGGGTGGTAGATTGTGA.........................................................................................................................1870.140.14-----------------0.14------------------------------------
...............................................................................................................TGGGGTGGTAGATTGTGTA........................................................................................................................1970.140.14--0.14---------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGTGTT........................................................................................................................1970.140.14----------0.14-------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGTGGA........................................................................................................................1970.140.14--0.14---------------------------------------------------
...............................................................................................................TGGGGTGGTAGATTGTAGT........................................................................................................................1970.140.14--------------------------------------------0.14---------
...............................................................................................................TGGGGTGGTAGATTGTTTG........................................................................................................................1970.140.14----------------------------------------------------0.14-
...............................................................................................................TGGGGTGGTAGATTGTAGA........................................................................................................................1970.140.14------------------0.14-----------------------------------
............................................................................................................................................................................AGTAGGACTCAGACC...............................................................1590.110.11-----------------------------------------------------0.11

Antisense strand
CCAGTACGGCGGCGCCTACAACCGCGTCCCAAGCGCCACCAACCAGCCAGGTACATGGACAGGGGGAAGGCTGGGCAGATACAGGGCGACTAGGACGCTGGGGGCGCGAGATGGGGTGGTAGATTGGGGGTCACAGCGGTTCACGGCAGTGGGGGCGCACGCGGCAGAAGGGAGTAGGACTCAGACCCTCCAACAAAGAGAGTTTCTCGGGCCAGCATTTTAGGGATTTTTAGTAGGAGAGCCCTGTGGA
...................................................................................................................((.((.(((.....)))...(((.(((((....))).)).)))..)).))......(((.....)))....................................................................
..........................................................................................................107...........................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR189784TAX577742(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189787SRR189783SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040015(GSM532900)
G623T. (cervix)		TAX577590(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................GGGGGAAGGCTGGGCGCCT.......................................................................................................................................................................... 191.000.00-----------------------------------------1.00------------
.................GCGCTTGGGACGCGGTTGT...................................................................................................................................................................................................................... 1911.001.00-------------1.00----------------------------------------
..........................................................................................................................................................................................................TTTCTCGGGCCAGCATTTACGA.......................... 221.000.00------------------------1.00-----------------------------
.....................................................................................................GGGCGCGAGATGGGGTC.................................................................................................................................... 171.000.00------------------------------------1.00-----------------
....................TGGCGCTTGGGACGCGGT.................................................................................................................................................................................................................... 1811.001.00-------------1.00----------------------------------------