ID: uc003ujs.2_intron_3_0_chr7_87913587_r.5p
GENE: (1)
chr7:87935907-87936156-


(1)
AGO2.ip
(5)
BREAST
(7)
CELL-LINE
(5)
CERVIX
(1)
HEART
(1)
LIVER
(3)
OTHER
(10)
SKIN
(1)
XRN.ip

Sense strand
GCGCACCGTTGGCGCTGGACGCTTCCTCCTTGGAAGCGCCTCTCCCTCAGGTGGGTCACTTTTCGCCACAAGGCTCCCGTCCCTTATCTGCTTCAGCTCACCTCCAGTCCCTGCTGCTAGGACCCCACTCCCCAGCCCATCGCACTGAAGAACAGGTGCTTGCAAACTCCCCGCCGCGCCCCGGCATCACTTTAGAGGAAAGTCACCTGAGGCTGCTCCGCGATTCAGCAAGCTTCTAACTTCCTGGAGT
......................................................................................................................................((.....(((((........)))))..)).........((((.....)))).................................................................
.....................................................................................................................................134........................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM532877(GSM532877)
G691N. (cervix)
SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189787SRR189783SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR040027(GSM532912)
G220T. (cervix)
SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)
TAX577579(Rovira)
total RNA. (breast)
.........................................................................................................................................................................CCCGCCGCGCCCCGGCGGGG.............................................................20330.000.67-13.0017.00-----------------------------
..........................................................................................................................................ATCGCACTGAAGAACAGG..............................................................................................18115.0015.0014.00---1.00---------------------------
........................................................................................................................................................................CCCCGCCGCGCCCCGGG.................................................................178.000.00-----1.00-2.00--1.00---1.00------1.00-1.00----1.00---
.............................................................................................................................................................................CCGCGCCCCGGCATC..............................................................1517.007.00---7.00----------------------------
.........................................................................................................................................................................CCCGCCGCGCCCCGGA.................................................................164.000.00-3.00------------------------1.00-----
..........................................................................................................................................................................CCGCCGCGCCCCGGCGGGA.............................................................194.000.00-3.001.00-----------------------------
..................................................................................................................................................................................................GAGGAAAGTCACCTGAGG......................................1823.503.503.50-------------------------------
............................................................................................................................................CGCACTGAAGAACAGGTG............................................................................................1813.003.003.00-------------------------------
.........................................................................................................................................................................CCCGCCGCGCCCCGGCGGGC.............................................................2032.000.67-2.00------------------------------
.CGCACCGTTGGCGCTGGACG.....................................................................................................................................................................................................................................2012.002.002.00-------------------------------
........................................................................................................................................................................CCCCGCCGCGCCCCGGGA................................................................182.000.00-----1.00--1.00-----------------------
..........................................................................................................................................................................CCGCCGCGCCCCGGCGGGG.............................................................192.000.00-1.001.00-----------------------------
.........................................................................................................................................................................CCCGCCGCGCCCCGGCGGG..............................................................1931.000.67--1.00-----------------------------
............................CTTGGAAGCGCCTCTTCAC...........................................................................................................................................................................................................191.000.00------------------------1.00-------
......................................................................................TCTGCTTCAGCTCACCTC..................................................................................................................................................1811.001.001.00-------------------------------
..........................................................................................................................................................................CCGCCGCGCCCCGGCACCGG............................................................201.000.00-1.00------------------------------
.......GTTGGCGCTGGACGCTTCCTC..............................................................................................................................................................................................................................2111.001.00-----------------1.00--------------
..........................TCCTTGGAAGCGCCTCTCCCTC..........................................................................................................................................................................................................2211.001.00-----------------------------1.00--
..........................................................................................................................................................................CCGCCGCGCCCCGGCGG...............................................................171.000.00--1.00-----------------------------
.........................................................................................................................................................................CCCGCCGCGCCCCGGCGAGG.............................................................2031.000.67--1.00-----------------------------
.........................................................................................................................................................................CCCGCCGCGCCCCGGCGGGA.............................................................2031.000.67-1.00------------------------------
..........................................................................................................................................ATCGCACTGAAGAACAG...............................................................................................1711.001.00-----------1.00--------------------
....ACCGTTGGCGCTGGACGCT...................................................................................................................................................................................................................................1911.001.00-------------------1.00------------
..........................................................................................................................................................................CCGCCGCGCCCCGGCGGCG.............................................................191.000.00-1.00------------------------------
........................................................................................................................................................................CCCCGCCGCGCCCCGGGGGA..............................................................201.000.00--1.00-----------------------------
......................................................................AGGCTCCCGTCCCTTTGG..................................................................................................................................................................181.000.00---------1.00----------------------
..........................................................................................................................................................................CCGCCGCGCCCCGGCGGG..............................................................181.000.00-1.00------------------------------
.........................................................................................................................................................AGGTGCTTGCAAACTCCC...............................................................................1811.001.00------------------------------1.00-
..............................................................................................................................................................CTTGCAAACTCCCCGGTGA.........................................................................191.000.00--------------------1.00-----------
........................................................................................................................................................................CCCCGCCGCGCCCCGGGG................................................................181.000.00-1.00------------------------------
.....................................................................................................................TAGGACCCCACTCCCGTTG..................................................................................................................191.000.00------------1.00-------------------
........................CCTCCTTGGAAGCGCCTG................................................................................................................................................................................................................181.000.00---------------1.00----------------
....................................................................................................................................CAGCCCATCGCACTG.......................................................................................................1511.001.00----------------------1.00---------
........................................................................................................................................................................CCCCGCCGCGCCCCGGCAC...............................................................191.000.00-----1.00--------------------------
........................................................................................................................................................................CCCCGCCGCGCCCCGGGACC..............................................................201.000.00--------1.00-----------------------
.........................................................................................................................................................................CCCGCCGCGCCCCGGCGGA..............................................................1931.000.67--1.00-----------------------------
....ACCGTTGGCGCTGGACGC....................................................................................................................................................................................................................................1811.001.00------------------1.00-------------
........................................................................................................................................................................CCCCGCCGCGCCCCGGGT................................................................181.000.00-------------1.00------------------
.........................................................................................................................................................................CCCGCCGCGCCCCGGC.................................................................1630.670.67-0.67------------------------------
..........................................................................................................................CCCCACTCCCCAGCCCAT..............................................................................................................1830.330.33-------------------------------0.33

Antisense strand
GCGCACCGTTGGCGCTGGACGCTTCCTCCTTGGAAGCGCCTCTCCCTCAGGTGGGTCACTTTTCGCCACAAGGCTCCCGTCCCTTATCTGCTTCAGCTCACCTCCAGTCCCTGCTGCTAGGACCCCACTCCCCAGCCCATCGCACTGAAGAACAGGTGCTTGCAAACTCCCCGCCGCGCCCCGGCATCACTTTAGAGGAAAGTCACCTGAGGCTGCTCCGCGATTCAGCAAGCTTCTAACTTCCTGGAGT
......................................................................................................................................((.....(((((........)))))..)).........((((.....)))).................................................................
.....................................................................................................................................134........................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
GSM532877(GSM532877)
G691N. (cervix)
SRR189782SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189787SRR189783SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR040027(GSM532912)
G220T. (cervix)
SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)
TAX577579(Rovira)
total RNA. (breast)
...........................................................................................................................................................GCGGGGAGTTTGCAAGCAC............................................................................ 19110.0010.0010.00-------------------------------
......................................................................................................................ATGGGCTGGGGAGTGGGGTCCT.............................................................................................................. 2213.003.00----3.00---------------------------
........................................................................................................................................................................................................AGTCACCTGAGGCTGCCTG............................... 191.000.00------1.00-------------------------
...........................................................................................................................................................................................................................AGCTTGCTGAATCGC................ 1511.001.00-------------------------1.00------
...........................................................................................TTCAGCTCACCTCCACTCG............................................................................................................................................ 191.000.001.00-------------------------------
........................................................................................................CAGTCCCTGCTGCTATTCT............................................................................................................................... 191.000.00------1.00-------------------------
...................................................................................................................................ACCTGTTCTTCAGTGCGATGGGCTGG............................................................................................. 2611.001.00----------------1.00---------------
.............................................................................................................................................................................................................TTGCTGAATCGCGGAGCAGCCTCAGG................... 2611.001.00----1.00---------------------------
.............................................................................................................................................................GCTTGCAAACTCCCCGCCC.......................................................................... 191.000.001.00-------------------------------
....................................................................................................................................................................................................................CTTGCTGAATCGCGGAGCAG.................. 2011.001.00----1.00---------------------------
.................................CACCTGAGGGAGAGGCGCTT..................................................................................................................................................................................................... 2011.001.00---------------------------1.00----
.......................................................................................................................................................................CGGGGCGCGGCGGGGA................................................................... 1660.330.33-0.33------------------------------