ID: uc003uja.1_intron_1_0_chr7_87230142_r
GENE: (2)
chr7:87230092-87230338-


(3)
B-CELL
(1)
BRAIN
(3)
BREAST
(12)
CELL-LINE
(2)
CERVIX
(5)
HEART
(3)
LIVER
(12)
SKIN
(1)
XRN.ip

Sense strand
TCTCGAGGAATCAGCATTCAGTCAATCCGGGCCGGGAGCAGTCATCTGTGGTGAGGCTGATTGGCTGGGCAGGAACAGCGCCGGGGCGTGGGCTGAGCACAGCCGCTTCGCTCTCTTTGCCACAGGAAGCCTGAGCTCATTCGAGTAGCGGCTCTTCCAAGCTCAAAGAAGCAGAGGCCGCTGTTCGTTTCCTTTAGGTCTTTCCACTAAAGTCGGAGTATCTTCTTCCAAAATTTCACGTCTTGGT
.............................................................................................................................................(((((((((((.(((....(((......))).))))))))))))))............................................................
.......................................................................................................................................136..........................................................197................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM359196(GSM359196)
m3m7G_ip. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191526(GSM715636)
127genomic small RNA (size selected RNA from . (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
...........................................................................................................................................................................CAGAGGCCGCTGTTCGTTTCCT......................................................2217.007.00--4.00---2.00--1.00-------------------------------
............................................................................................................................................TCGAGTAGCGGCTCTTCCA........................................................................................1916.006.00-6.00---------------------------------------
...................................................................................................................................................................................GCTGTTCGTTTCCTTTAGG.................................................1915.005.005.00----------------------------------------
.............................................................................................................................................CGAGTAGCGGCTCTTCCAAGCTCAA.................................................................................2514.004.00---4.00-------------------------------------
...............................................................................................................................................................AGCTCAAAGAAGCAGAGG......................................................................1814.004.004.00----------------------------------------
................................................................................................................................................................GCTCAAAGAAGCAGAGGCCGCTG................................................................2312.002.00---------------------1.00----------1.00--------
................................................................................................................................................................GCTCAAAGAAGCAGAGGCCGCTGT...............................................................2412.002.00----------1.00-1.00----------------------------
.......................................................................................................................................................................GAAGCAGAGGCCGCTGTTCG............................................................2012.002.00--------2.00--------------------------------
........................................................................................................................................................................AAGCAGAGGCCGCTGTTCGTTT.........................................................2212.002.00-----1.00-1.00---------------------------------
..........................................................................................................................................ATTCGAGTAGCGGCTCTTCCAAGCTCAAAGAAGCAG.........................................................................3612.002.00-----1.00-1.00---------------------------------
............................................................................................................................................................................AGAGGCCGCTGTTCGTTTCCT......................................................2112.002.00----1.00---------------------1.00--------------
..................................................................................................ACAGCCGCTTCGCTCTCTTTGCCACAGGAAG......................................................................................................................3112.002.00-----1.00-1.00---------------------------------
................................................................................................................................................................GCTCAAAGAAGCAGAGGC.....................................................................1821.501.50----------0.500.50--------------------------0.50--
................................................................................................................................................................GCTCAAAGAAGCAGAGGCCGCTGTTC.............................................................2611.001.00---------------------------1.00-------------
................................................................................................................................................GTAGCGGCTCTTCCAAGCTCAAAGAAGCA..........................................................................2911.001.00-----------------1.00-----------------------
............................................................................................................................................TCGAGTAGCGGCTCTTCC.........................................................................................1811.001.00---------------------------------1.00-------
................................................................................................................................................................GCTCAAAGAAGCAGAGGCC....................................................................1921.001.00------------0.50--------------------------0.50-
...........................................................................................................................................................................CAGAGGCCGCTGTTCGTTTCTT......................................................221.000.00-----------------------1.00-----------------
.............................................................................GCGCCGGGGCGTGGGACA........................................................................................................................................................181.000.00---------1.00-------------------------------
........................................................................................................................................................TCTTCCAAGCTCAAAGAA.............................................................................1811.001.00-------------------------------------1.00---
............................................................................................................................................................................AGAGGCCGCTGTTCGTTT.........................................................1811.001.00----1.00------------------------------------
..............................................................................................................................................GAGTAGCGGCTCTTCCAAGCTCAA.................................................................................2411.001.00------------------------------1.00----------
.............................................................TGGCTGGGCAGGAACTCTG.......................................................................................................................................................................191.000.00-------------------------------1.00---------
..........................................................................................................................................ATTCGAGTAGCGGCTCTTCCAAGCTT...................................................................................261.000.00----------------------1.00------------------
............................................................................................................................................................CCAAGCTCAAAGAAGCAGAGGCCGCTGTTCG............................................................3111.001.00-------------------------1.00---------------
...................................................................................................................................................................CAAAGAAGCAGAGGCCGCTG................................................................2011.001.00----------------------------------1.00------
..........................................................................................................................................ATTCGAGTAGCGGCTCTTCTC........................................................................................211.000.00------------------------------------1.00----
..............................................................................................................................................GAGTAGCGGCTCTTCCAAGCTCAAAGAAG............................................................................2911.001.00------------------------1.00----------------
...............................................................................................................................................AGTAGCGGCTCTTCCAAGCTCAA.................................................................................2311.001.00----1.00------------------------------------
...................................................................................................................................................................................GCTGTTCGTTTCCTTTCGG.................................................191.000.001.00----------------------------------------
..........................................................................................................................................................................................................................TATCTTCTTCCAAAATAAA..........191.000.00-----------------------------1.00-----------
............................................................................................................................................TCGAGTAGCGGCTCT............................................................................................1511.001.00--------------------1.00--------------------
.................................................................................................................................................................................CCGCTGTTCGTTTCCG......................................................161.000.00-----------1.00-----------------------------
.........................................................................................................................................................CTTCCAAGCTCAAAGAAGCAGA........................................................................2211.001.00------------------1.00----------------------
................................................................................................................................................................GCTCAAAGAAGCAGAGGCCG...................................................................2011.001.00-----------------------------------1.00-----
.................................................................................................................................................................CTCAAAGAAGCAGAGGC.....................................................................1730.330.33----------------------------------------0.33

Antisense strand
TCTCGAGGAATCAGCATTCAGTCAATCCGGGCCGGGAGCAGTCATCTGTGGTGAGGCTGATTGGCTGGGCAGGAACAGCGCCGGGGCGTGGGCTGAGCACAGCCGCTTCGCTCTCTTTGCCACAGGAAGCCTGAGCTCATTCGAGTAGCGGCTCTTCCAAGCTCAAAGAAGCAGAGGCCGCTGTTCGTTTCCTTTAGGTCTTTCCACTAAAGTCGGAGTATCTTCTTCCAAAATTTCACGTCTTGGT
.............................................................................................................................................(((((((((((.(((....(((......))).))))))))))))))............................................................
.......................................................................................................................................136..........................................................197................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM359196(GSM359196)
m3m7G_ip. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191526(GSM715636)
127genomic small RNA (size selected RNA from . (breast)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
TAX577743(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.............................................................................................TGAGCACAGCCGCTTAAAA....................................................................................................................................... 192.000.00------1.00---------1.00------------------------
.....................TCAATCCGGGCCGGGTAGC............................................................................................................................................................................................................... 191.000.00--------------1.00--------------------------
............................................................................................................................GGAAGCCTGAGCTCAGGCA........................................................................................................ 191.000.00-------------1.00---------------------------
.........................................................................................................CTTCGCTCTCTTTGCCGC............................................................................................................................ 181.000.00-------------------1.00---------------------
..........................................................................................GGCTGAGCACAGCCGGGAA.......................................................................................................................................... 191.000.00----------------------------1.00------------
.............................................................................GCGCCGGGGCGTGGGAGG........................................................................................................................................................ 181.000.00---------------1.00-------------------------
...................................................TGAGGCTGATTGGCTGTGTT................................................................................................................................................................................ 201.000.00----1.00------------------------------------
.....................................................................................................................................................................................TAAAGGAAACGAACA................................................... 1530.330.33-------------0.33---------------------------