ID: uc003uiv.1_intron_14_0_chr7_87069154_r
GENE: ABCB4(13)
chr7:87069104-87069564-


(1)
AGO1.ip OTHER.mut 		(1)
BRAIN 		(1)
BREAST 		(8)
CELL-LINE 		(5)
CERVIX 		(1)
HEART 		(5)
LIVER 		(1)
OTHER 		(5)
SKIN 		(4)
UTERUS

Sense strand
AAGCTGTCAAAGAGGCCAACGCCTATGAGTTTATCATGAAATTACCACAGGTAAAGCCTCTGATAAAGTAGTTGTCCTTGAAATTAGAATTTCACCTCATAGGACTGAGTTTATTCTTCAAAGGTTTAGCTAATAATGTTTGAGATGCAAGATTGTCCAACTTTGCTAGATAAGTCCCCTGAATGACTCAGTTAGGGGTTAAAGGATTATAGCATGGTAGATGATTAATATAAAATTTTATACAGCATGTGTCAGTTTTTTATAATTCAGAATTCATTTATCTTATCATACTTTATGATACATTAAAATAGTTAAGACAAAGCTCCATGTTGTCTTTATGTAGTTCTATAGAATTCCTAGCCTTTTTAAATTTAAGTTACTTCAAGAGCTGATCCATGTTTTCTGTGTTAGAAATTTGACACCCTGGTTGGAGAGAGAGGGGCCCAGCTGAGTGGTGGGCA
.....................................................................................................................................................................................................((((........))))..(((((((((....(((((((..((((((.....)))).))..))))))).........))))))))).(((((((...))))))).................................................................................................................................................................
....................................................................................................................................................................................................197....................................................................................................300...............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR029131(GSM416760)
MCF7. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029127(GSM416756)
A549. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189785GSM532876(GSM532876)
G547T. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040043(GSM532928)
G428T. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR189782SRR029130(GSM416759)
DLD2. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040029(GSM532914)
G026T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTATT.....................................................................................................................................................................1883.000.0054.0013.0011.00--1.00---1.001.00---1.001.00------------------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTATTT....................................................................................................................................................................1932.000.0017.004.003.00-----2.002.00-1.00--1.001.00------1.00-----------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTATG.....................................................................................................................................................................1823.000.0015.00-2.00-------2.00--1.00-----1.00----1.00-1.00-------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTATGT....................................................................................................................................................................198.000.008.00---------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGAGGGGCCCGT..............175.000.00------4.00-----1.00---------------------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTACT.....................................................................................................................................................................185.000.00-----5.00----------------------------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTAT......................................................................................................................................................................173.000.00--------1.00-----------1.00----1.00--------
.........................................................................................................................................................................................................AAGGATTATAGCATGGTAG.................................................................................................................................................................................................................................................1912.002.00---2.00------------------------------
........................................................................................................................................................................................................AAAGGATTATAGCATGGTAG.................................................................................................................................................................................................................................................2012.002.00---2.00------------------------------
..........................................................................................................................................................................................................AGGATTATAGCATGGTAGATGATTA..........................................................................................................................................................................................................................................2512.002.00---2.00------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGAGGGGCCCGTGC............192.000.00------2.00---------------------------
..........................................................................................................................................................................................................AGGATTATAGCATGGTAGATG..............................................................................................................................................................................................................................................2112.002.00---2.00------------------------------
....................................................................................................................................................................................................GGTTAAAGGATTATAGCATG.....................................................................................................................................................................................................................................................2012.002.00----2.00-----------------------------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTATA.....................................................................................................................................................................182.000.00-2.00--------------------------------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTGTT.....................................................................................................................................................................182.000.00-----------2.00----------------------
.......................................................................................AATTTCACCTCATAGGAC....................................................................................................................................................................................................................................................................................................................................................................1812.002.00---2.00------------------------------
..................................................................................................ATAGGACTGAGTTTATTC.........................................................................................................................................................................................................................................................................................................................................................1812.002.00---2.00------------------------------
.................................................................................................................................................................................................................................................................................................................AAATAGTTAAGACAAAGCT.........................................................................................................................................1912.002.00---2.00------------------------------
.....................................................................................................................................................................................................................................................................................................................AGTTAAGACAAAGCTCCATGT...................................................................................................................................2112.002.00----2.00-----------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGGGGCCCAGCA............171.000.00----------------------------1.00-----
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTATAA....................................................................................................................................................................191.000.001.00---------------------------------
.....................................................................................................................................................................................................GTTAAAGGATTATAGCATGATA..................................................................................................................................................................................................................................................221.000.00----1.00-----------------------------
.................................................................................AATTAGAATTTCACCTCATAGGAC....................................................................................................................................................................................................................................................................................................................................................................2411.001.00----1.00-----------------------------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTGTGT....................................................................................................................................................................191.000.00----------------1.00-----------------
..............................................................................................................................................................................................................................................................................................................TTAAAATAGTTAAGACAAAGC..........................................................................................................................................2111.001.00----1.00-----------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAGTGGTGGGCGGC181.000.00---------------------------1.00------
.........................................TTACCACAGGTAAAGTT...................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-------------1.00--------------------
..........................................................................................................................................................................................................................................................................................................................................................................................ACTTCAAGAGCTGATCCAT................................................................1911.001.00-------------------------------1.00--
.AGCTGTCAAAGAGGCCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------1.00---------------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTTTTTT...................................................................................................................................................................201.000.00-----------------------1.00----------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTATCT....................................................................................................................................................................191.000.00-----------------------------1.00----
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGAGGGGCCCCT..............171.000.00------------1.00---------------------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTACG.....................................................................................................................................................................181.000.00-----1.00----------------------------
......................................................................................................................................................................................................................................................................................TATCTTATCATACTTTTTTA...................................................................................................................................................................201.000.00-1.00--------------------------------
........................................................................................................................................................................................................AAAGGATTATAGCATGGTAGATG..............................................................................................................................................................................................................................................2311.001.00----1.00-----------------------------
.....................................................................................................................................................................................................GTTAAAGGATTATAGCATGGTA..................................................................................................................................................................................................................................................2211.001.00----1.00-----------------------------
............................................................................................................................................TGAGATGCAAGATTGTATAT.............................................................................................................................................................................................................................................................................................................201.000.00------------------------------1.00---
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGAGAGAGGGGTAAA...............191.000.00---------------------1.00------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGTTGGAGAGAGAGGGGCCCAG..............2520.500.50---0.50------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTTGGAGAGAGAGGGGCCCAG..............2420.500.50----0.50-----------------------------
................................................................................................TCATAGGACTGAGTTT.............................................................................................................................................................................................................................................................................................................................................................1660.170.17---------------------------------0.17

Antisense strand
AAGCTGTCAAAGAGGCCAACGCCTATGAGTTTATCATGAAATTACCACAGGTAAAGCCTCTGATAAAGTAGTTGTCCTTGAAATTAGAATTTCACCTCATAGGACTGAGTTTATTCTTCAAAGGTTTAGCTAATAATGTTTGAGATGCAAGATTGTCCAACTTTGCTAGATAAGTCCCCTGAATGACTCAGTTAGGGGTTAAAGGATTATAGCATGGTAGATGATTAATATAAAATTTTATACAGCATGTGTCAGTTTTTTATAATTCAGAATTCATTTATCTTATCATACTTTATGATACATTAAAATAGTTAAGACAAAGCTCCATGTTGTCTTTATGTAGTTCTATAGAATTCCTAGCCTTTTTAAATTTAAGTTACTTCAAGAGCTGATCCATGTTTTCTGTGTTAGAAATTTGACACCCTGGTTGGAGAGAGAGGGGCCCAGCTGAGTGGTGGGCA
.....................................................................................................................................................................................................((((........))))..(((((((((....(((((((..((((((.....)))).))..))))))).........))))))))).(((((((...))))))).................................................................................................................................................................
....................................................................................................................................................................................................197....................................................................................................300...............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR029131(GSM416760)
MCF7. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR029127(GSM416756)
A549. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189785GSM532876(GSM532876)
G547T. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR040043(GSM532928)
G428T. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR189782SRR029130(GSM416759)
DLD2. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040029(GSM532914)
G026T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................................CTGAGTCATTCAGGGGACTTATCTAGCAAAG.............................................................................................................................................................................................................................................................................. 3113.003.00-------3.00--------------------------
...................................................................................................................................................................................................................................................................................ATTTATCTTATCATACCGG....................................................................................................................................................................... 191.000.00-----------------1.00----------------
...................GATAAACTCATAGGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 1620.500.50--------------------------------0.50-