ID: uc003uil.2_intron_0_0_chr7_86782112_f.5p
GENE: (1)
chr7:86782062-86782311+


(12)
B-CELL 		(2)
BRAIN 		(8)
BREAST 		(25)
CELL-LINE 		(8)
CERVIX 		(5)
HEART 		(3)
HELA 		(5)
LIVER 		(3)
OTHER 		(2)
RRP40.ip 		(30)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
GGCCTCCCTCTTAGGGCCGGGCGGTGCCCGTGGCTCAGGCTGCAGAGTAGGGAAGCGAGCGGCTGCCGAGGCACAGCGGCGATCCGGCGGGGGCGGAAAATGGCGGCGGCTTCGGAGGAGCTAAATGGCGCCGGGACCCCTGGGGGGTGGGGTGGGCCGGGAGGTTGAGTAGAGAACTGGGCCAGAAGGAGTGGAGACAGTAAGGAAGCCCTACTTGTTTTCTCGTGGTGTTCTATTTTTAGTTTTTATT
..........................................................................................................(((((.(((....(((....))).)))..(((((........))))).)))))...((((.(((.....))).))))...................................................................
.........................................................................................................106..........................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR038863(GSM458546)
MM603. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189785SRR040007(GSM532892)
G601T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040024(GSM532909)
G613N. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)		SRR040019(GSM532904)
G701T. (cervix)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191521(GSM715631)
92genomic small RNA (size selected RNA from t. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		GSM532872(GSM532872)
G652T. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..............................................................................................................TTCGGAGGAGCTAAATGG..........................................................................................................................18117.0017.001.00----4.00-----------------1.00---------2.00-1.00----1.001.00-------------1.00---1.00-----1.00---1.00-----------1.00-----------------1.00-----
..............................................................................................................TTCGGAGGAGCTAAATGGC.........................................................................................................................1919.009.00----1.00----------1.00----------2.001.00----1.00---------------------------1.00--------------------------------1.00-1.00---------
............................................................................................................GCTTCGGAGGAGCTAAATGG..........................................................................................................................2017.007.00------5.00----------------------1.00---------1.00-----------------------------------------------------------------
...................................CAGGCTGCAGAGTAGGGAAG...................................................................................................................................................................................................2014.004.001.002.00-------------------------------------------------------------------------------------1.00-----------------
..........................................CAGAGTAGGGAAGCGAGCGG............................................................................................................................................................................................2014.004.004.00--------------------------------------------------------------------------------------------------------
....................................AGGCTGCAGAGTAGGGAAGCGAG...............................................................................................................................................................................................2313.003.00---------1.00-----1.00----------------1.00------------------------------------------------------------------------
............................................................................................................GCTTCGGAGGAGCTAAATGGC.........................................................................................................................2113.003.00----------1.00-----2.00----------------------------------------------------------------------------------------
..............................................................................................................................................................GGGAGGTTGAGTAGAGAACTG.......................................................................2113.003.003.00--------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................AGAAGGAGTGGAGACAGTA................................................1913.003.00--------------1.00--2.00---------------------------------------------------------------------------------------
......................................................................GCACAGCGGCGATCCGG...................................................................................................................................................................1712.002.00---------------------------1.00-------------------------------------------------------1.00---------------------
......................................................GCGAGCGGCTGCCGAGGC..................................................................................................................................................................................1812.002.00--------2.00------------------------------------------------------------------------------------------------
........................................................................................................................................................................................GAAGGAGTGGAGACAGTA................................................1812.002.00----------------1.00------------------------------------------------------1.00---------------------------------
......CCTCTTAGGGCCGGGCGG..................................................................................................................................................................................................................................1812.002.00-2.00-------------------------------------------------------------------------------------------------------
...................................CAGGCTGCAGAGTAGGGAAGCG.................................................................................................................................................................................................2212.002.00---------------1.00------1.00----------------------------------------------------------------------------------
..........................................................................................................................................................................AGAGAACTGGGCCAGAAGGAGTGGA.......................................................2512.002.00-2.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AACTGGGCCAGAAGGAGTGA........................................................202.000.00-2.00-------------------------------------------------------------------------------------------------------
................CCGGGCGGTGCCCGTGGCTCAGGCTGCAGAG...........................................................................................................................................................................................................3112.002.00-------1.00--------------------------------------------1.00----------------------------------------------------
...........................................................................................................................................................................................GGAGTGGAGACAGTAAGGAAGCCCTACTTG.................................3012.002.00-------------------------------2.00-------------------------------------------------------------------------
.............GGGCCGGGCGGTGCCCGTGGC........................................................................................................................................................................................................................2112.002.00-------------------1.00-------------------------1.00-----------------------------------------------------------
..........................................CAGAGTAGGGAAGCGAGCGGCT..........................................................................................................................................................................................2212.002.00----------------------------------2.00----------------------------------------------------------------------
................................................AGGGAAGCGAGCGGCTGCCGGG....................................................................................................................................................................................2211.001.00----------------------------------------------------------------------1.00----------------------------------
....................................................................................................................................................................TTGAGTAGAGAACTGGGCC...................................................................1911.001.00-------------------------------------------1.00-------------------------------------------------------------
...........................................................................................................................................................GCCGGGAGGTTGAGTAGA.............................................................................1811.001.00-------1.00-------------------------------------------------------------------------------------------------
........................................................................................................................................................................GTAGAGAACTGGGCCAGAAGG.............................................................2111.001.001.00--------------------------------------------------------------------------------------------------------
............................................................................................................GCTTCGGAGGAGCTAAATGGCG........................................................................................................................2211.001.00--------------------------------------1.00------------------------------------------------------------------
..................................TCAGGCTGCAGAGTAGGGAAGCGAGC..............................................................................................................................................................................................2611.001.00-------------------1.00-------------------------------------------------------------------------------------
....................................................................................................................GGAGCTAAATGGCGCCGGGA..................................................................................................................2011.001.00-------------------------------------1.00-------------------------------------------------------------------
.................................................................................................................................................................AGGTTGAGTAGAGAACTG.......................................................................1811.001.00------------------------------------------------------------------------------------1.00--------------------
..........................................................................................................................................................................................AGGAGTGGAGACAGTAAGGAAGCCCTACCT..................................301.000.00---1.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................GGAGGTTGAGTAGAGAACT........................................................................1911.001.00-----------------------------------------------1.00---------------------------------------------------------
...............................................................TGCCGAGGCACAGCGG...........................................................................................................................................................................1611.001.00-----1.00---------------------------------------------------------------------------------------------------
..................................................................................................AATGGCGGCGGCTTCGGAGGAGCCA...............................................................................................................................251.000.00---1.00-----------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................AGAAGGAGTGGAGACAGTAA...............................................2011.001.00----------1.00----------------------------------------------------------------------------------------------
.............................................................................................................CTTCGGAGGAGCTAAATGG..........................................................................................................................1911.001.00------------------------1.00--------------------------------------------------------------------------------
..........................................................................................................CGGCTTCGGAGGAGCTAA..............................................................................................................................1811.001.00------------------------------------------------------------------------------1.00--------------------------
.................................CTCAGGCTGCAGAGTAGGGAAGCGAG...............................................................................................................................................................................................2611.001.00-------------1.00-------------------------------------------------------------------------------------------
......................................................................GCACAGCGGCGATCCGGCGGGGGCGGAA........................................................................................................................................................2811.001.00---------------------------------------------------------------------------1.00-----------------------------
........................................................................................................................................................................................GAAGGAGTGGAGACAGTAAGGAAGCC........................................2611.001.00------------------------------------------1.00--------------------------------------------------------------
..........................................CAGAGTAGGGAAGCGAGC..............................................................................................................................................................................................1811.001.00-------------------------------------------------------------------------------------------1.00-------------
.......................................................................CACAGCGGCGATCCGG...................................................................................................................................................................1611.001.00------------------1.00--------------------------------------------------------------------------------------
......................GGTGCCCGTGGCTCAGG...................................................................................................................................................................................................................1711.001.00----------------------------1.00----------------------------------------------------------------------------
..............................................................CTGCCGAGGCACAGCGG...........................................................................................................................................................................1711.001.00----1.00----------------------------------------------------------------------------------------------------
........................................................................................................................................................................................GAAGGAGTGGAGACAGTAAGGAAGAC........................................261.000.00------------------------------------------1.00--------------------------------------------------------------
...............................................................................CGATCCGGCGGGGGCGG..........................................................................................................................................................1711.001.00----1.00----------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................AAGGAGTGGAGACAGTAAGG.............................................2011.001.00------------------------------------1.00--------------------------------------------------------------------
............................................................................................GCGGAAAATGGCGGCGGCT...........................................................................................................................................1911.001.00----------------------------------------------------------------------------------------------1.00----------
............AGGGCCGGGCGGTGCCCGTGGCTCAGGCTGCAG.............................................................................................................................................................................................................3311.001.00--1.00------------------------------------------------------------------------------------------------------
...........................................AGAGTAGGGAAGCGAG...............................................................................................................................................................................................1611.001.00------------------------------------------------------------------------------------------1.00--------------
............AGGGCCGGGCGGTGCCCGTGGCTCAGGCTGC...............................................................................................................................................................................................................3111.001.00---1.00-----------------------------------------------------------------------------------------------------
..............................................................................................................TTCGGAGGAGCTAAATG...........................................................................................................................1711.001.00---------1.00-----------------------------------------------------------------------------------------------
.........................................................................................................GCGGCTTCGGAGGAGCTA...............................................................................................................................1811.001.00----------------------------------------------------------------------------------------1.00----------------
..................................................................................TCCGGCGGGGGCGGAAAATGGC..................................................................................................................................................2211.001.00--------------------------------------------------------1.00------------------------------------------------
............................................................................................................................................................................AGAACTGGGCCAGAAGGAGTGG........................................................2211.001.00-----------------------1.00---------------------------------------------------------------------------------
.......CTCTTAGGGCCGGGCGGTGCCCGTGGCTCAGGCT.................................................................................................................................................................................................................3411.001.00------------------------------------------------------------------------1.00--------------------------------
...........................................................CGGCTGCCGAGGCACAGCGGC..........................................................................................................................................................................2111.001.00---------------------------------------------------------------1.00-----------------------------------------
..........................................................GCGGCTGCCGAGGCACAGCGGCG.........................................................................................................................................................................2311.001.00--------------------1.00------------------------------------------------------------------------------------
.....................................................................................................................................................................TGAGTAGAGAACTGGGCCAGAAGGAGTG.........................................................2811.001.00--------------------------------------1.00------------------------------------------------------------------
...........................................AGAGTAGGGAAGCGAGCG.............................................................................................................................................................................................1811.001.00---------------------------------------------------------1.00-----------------------------------------------
..........................................................................................................................................................................................AGGAGTGGAGACAGTAAG..............................................1821.001.00-----------------0.50--------------------------0.50------------------------------------------------------------
..........................................................GCGGCTGCCGAGGCACAGCAGC..........................................................................................................................................................................221.000.00----1.00----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GGGCCAGAAGGAGTGGAGAC....................................................2011.001.00-------------------------------------------------1.00-------------------------------------------------------
................................................AGGGAAGCGAGCGGCTGCCG......................................................................................................................................................................................2011.001.00---------------------------------------------------1.00-----------------------------------------------------
...........................................................................................GGCGGAAAATGGCGGCGGCTT..........................................................................................................................................2111.001.00-----------------------------------------------------------------------------------------1.00---------------
....................................................................................CGGCGGGGGCGGAAACACC...................................................................................................................................................191.000.00-------------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................TTGAGTAGAGAACTGGGCCAGAA...............................................................2311.001.00-------------------------------------------------------------------------------------1.00-------------------
..........................................................................................................................................................................................AGGAGTGGAGACAGTGCAC.............................................191.000.00--1.00------------------------------------------------------------------------------------------------------
...................................................................................................................................................TGGGGTGGGCCGGGACAGG....................................................................................191.000.00---1.00-----------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGGGCCAGAAGGAGGAT........................................................181.000.00--------------------------------------------------------------------1.00------------------------------------
.............................................................................................................CTTCGGAGGAGCTAAATGGC.........................................................................................................................2011.001.00-----------------------------------------1.00---------------------------------------------------------------
.....................................................................................................................................................................TGAGTAGAGAACTGGGCCAGAAGGAGTGG........................................................2911.001.00------------1.00--------------------------------------------------------------------------------------------
..............................................................................................................TTCGGAGGAGCTAAATGGCGCC......................................................................................................................2211.001.00-------------------------------------------------------------------------1.00-------------------------------
....................................................................AGGCACAGCGGCGATCCGGC..................................................................................................................................................................2011.001.00------------------1.00--------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................GTGTTCTATTTTTAGCTGG....191.000.00----------------------------1.00----------------------------------------------------------------------------
.........................................................................................................................................................................TAGAGAACTGGGCCAGAAGGAGTGGAGACAG..................................................3111.001.00---1.00-----------------------------------------------------------------------------------------------------
.......................GTGCCCGTGGCTCAGTTGT................................................................................................................................................................................................................191.000.00-------------------------------------1.00-------------------------------------------------------------------
...........................................................................................................................................................GCCGGGAGGTTGAGTAG..............................................................................1711.001.00----1.00----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................AGGAGTGGAGACAGTGTC..............................................181.000.00--1.00------------------------------------------------------------------------------------------------------
.......................................CTGCAGAGTAGGGAAGC..................................................................................................................................................................................................1711.001.00----------------------------------------------------------------------------1.00----------------------------
................................................AGGGAAGCGAGCGGCTGCCGA.....................................................................................................................................................................................2111.001.00--------------------------------------------1.00------------------------------------------------------------
......................................................................................................................................................................................CAGAAGGAGTGGAGACAGTA................................................2011.001.00---------------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................................................................AACTGGGCCAGAAGGAGTGGAGAC....................................................2411.001.00-------1.00-------------------------------------------------------------------------------------------------
.......................................................................................................................................................................AGTAGAGAACTGGGCC...................................................................1611.001.00-----------1.00---------------------------------------------------------------------------------------------
...................................CAGGCTGCAGAGTAGGGAAGCGAGC..............................................................................................................................................................................................2511.001.00-------------------------------------------------------------1.00-------------------------------------------
.......................................................................................................................................................................................AGAAGGAGTGGAGACGTGG................................................191.000.00-------------------------1.00-------------------------------------------------------------------------------
................................................AGGGAAGCGAGCGGCTGCC.......................................................................................................................................................................................1911.001.00--------------1.00------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................TGGTGTTCTATTTTTCCTT......191.000.00-------------------------------------------------------------------1.00-------------------------------------
........................................................GAGCGGCTGCCGAGGCACAGCGGC..........................................................................................................................................................................2411.001.00---------1.00-----------------------------------------------------------------------------------------------
..........................................CAGAGTAGGGAAGCGAG...............................................................................................................................................................................................1711.001.00----1.00----------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................AGAAGGAGTGGAGACAGTAAGGAAGCC........................................2711.001.00--------------------------------------------------------------------------------------1.00------------------
................................................................GCCGAGGCACAGCGGCGAT.......................................................................................................................................................................1911.001.00-----------------------------1.00---------------------------------------------------------------------------
................CCGGGCGGTGCCCGTGG.........................................................................................................................................................................................................................1711.001.00--------------------------------------------------------------------------------1.00------------------------
.............................................................................................................................................................................................AGTGGAGACAGTAAGGAAGCCCTA.....................................2411.001.00-----------------------------------------------------1.00---------------------------------------------------
..........................................................................................................................................................................................AGGAGTGGAGACAGTAAGGAAGCCCTACTTG.................................3111.001.00------------------------------------------------1.00--------------------------------------------------------
........................TGCCCGTGGCTCAGGCTGGAG.............................................................................................................................................................................................................211.000.00--1.00------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................AGTAGAGAACTGGGCCAGAAGGAGTGGAAT.....................................................301.000.00-----------1.00---------------------------------------------------------------------------------------------
........................................................................................................................................................................GTAGAGAACTGGGCCAGAAGGAGTGGAGACAG..................................................3211.001.00-----------1.00---------------------------------------------------------------------------------------------
................................................................GCCGAGGCACAGCGGCGATCCGGCGGGGGC............................................................................................................................................................3011.001.00------------1.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................................................AGGAGTGGAGACAGTAAGGAAGCCC.......................................2511.001.00-----------1.00---------------------------------------------------------------------------------------------
............................................................................................................................................TGGGGGGTGGGGTGGGCCGGGAGG......................................................................................2411.001.00--1.00------------------------------------------------------------------------------------------------------
................................................................................................AAAATGGCGGCGGCTTGTTT......................................................................................................................................201.000.00--------1.00------------------------------------------------------------------------------------------------
..............................................................CTGCCGAGGCACAGCGGCGATCCGGC..................................................................................................................................................................2611.001.00----------------------------------------1.00----------------------------------------------------------------
..................................TCAGGCTGCAGAGTAGGGAAG...................................................................................................................................................................................................2111.001.00------------------------1.00--------------------------------------------------------------------------------
......................................................................................................................................................................GAGTAGAGAACTGGGCCAGAAGG.............................................................2311.001.00------------------------------------1.00--------------------------------------------------------------------
....................................................................AGGCACAGCGGCGATCCG....................................................................................................................................................................1811.001.00-------------------------------------------------------------------------------------------------1.00-------
...................................CAGGCTGCAGAGTAGGGAAGC..................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------------1.00------
..............................................................................................................TTCGGAGGAGCTAAATGGCG........................................................................................................................2011.001.00---------1.00-----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................AGAAGGAGTGGAGACAGT.................................................1811.001.00--------1.00------------------------------------------------------------------------------------------------
.............................................................................................................CTTCGGAGGAGCTAAATGGCGC.......................................................................................................................2211.001.00------------------------------------------------------------------------------------------------1.00--------
.........................................................................................................................................................................................AAGGAGTGGAGACAGTAAGGAAGCCCT......................................2711.001.00--1.00------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................GAGTGGAGACAGTAAGGA............................................1811.001.00------------------------------------------------------1.00--------------------------------------------------
...........................................AGAGTAGGGAAGCGAGCGGCTGCCGAGGCA.................................................................................................................................................................................3011.001.00--------------------1.00------------------------------------------------------------------------------------
............................................GAGTAGGGAAGCGAGCGGCTGCCGA.....................................................................................................................................................................................2511.001.00------------------------------------------------------------------1.00--------------------------------------
..........................................................................................................................................................................................AGGAGTGGAGACAGTAAGGAAGCCA.......................................2511.001.00---1.00-----------------------------------------------------------------------------------------------------
................................................AGGGAAGCGAGCGGCGGC........................................................................................................................................................................................181.000.00----------------------------------------------1.00----------------------------------------------------------
...................................................................................................ATGGCGGCGGCTTCGGAGGAGCTAAAT............................................................................................................................2711.001.00----------------------------------------------------------------1.00----------------------------------------
...........................................................................................................................................................GCCGGGAGGTTGAGTAGAGAACTGG......................................................................2511.001.00----------1.00----------------------------------------------------------------------------------------------
......................................................................................................................................................................GAGTAGAGAACTGGGCCAGAAGGAGTGG........................................................2811.001.00------------1.00--------------------------------------------------------------------------------------------
.........................................GCAGAGTAGGGAAGCGAGC..............................................................................................................................................................................................1911.001.00---------------------------------------1.00-----------------------------------------------------------------
....................................................................................................................................................................................GCCAGAAGGAGTGGAGA.....................................................1721.001.00------------0.50-----------------------------------------------------------------------------------------0.50--
...................................CAGGCTGCAGAGTAGGGAAGCGAGCGGC...........................................................................................................................................................................................2811.001.00--------------------------------------------------------------1.00------------------------------------------
...................................................................................................................................................................................GGCCAGAAGGAGTGGAGACATTG................................................231.000.00----------------------1.00----------------------------------------------------------------------------------
..........................................................................................................................................................................AGAGAACTGGGCCAGAAGGAGT..........................................................2211.001.00--------------1.00------------------------------------------------------------------------------------------
..........................................................................................................................................................................................AGGAGTGGAGACAGTAAGGAAGCC........................................2411.001.00-------------1.00-------------------------------------------------------------------------------------------
..............................................................................................................................................................................................GTGGAGACAGTAAGGAAGCCCTAA....................................241.000.00---------------------1.00-----------------------------------------------------------------------------------
............................................................................................................................................TGGGGGGTGGGGTGGGCCGGGAGGTTGAG.................................................................................2911.001.00--1.00------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GGGCCAGAAGGAGTGGAG......................................................1811.001.00-------------------------1.00-------------------------------------------------------------------------------
........................................................................................................................................................................GTAGAGAACTGGGCCAGAAGGAGT..........................................................2411.001.00----------------------------------------------------------------------------------1.00----------------------
....................................................................AGGCACAGCGGCGATCCGG...................................................................................................................................................................1911.001.00------------------------------1.00--------------------------------------------------------------------------
.................................................................................................................................GCCGGGACCCCTGGGGGGT......................................................................................................1911.001.00----------------------------------------------------------1.00----------------------------------------------
...................................CAGGCTGCAGAGTAGGGA.....................................................................................................................................................................................................1811.001.00-1.00-------------------------------------------------------------------------------------------------------
................................................................................................................................................................GAGGTTGAGTAGAGAACTGGCCCA..................................................................241.000.00----------1.00----------------------------------------------------------------------------------------------
.........................................................................................................GCGGCTTCGGAGGAGCTAAAT............................................................................................................................2111.001.00-----------------------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................CAGAAGGAGTGGAGACAGTAAGT.............................................231.000.00-------------------------------------------------------------------------------1.00-------------------------
.................CGGGCGGTGCCCGTGG.........................................................................................................................................................................................................................1620.500.50----------------------------------------------------------------------------------------------------0.50----
......................................GCTGCAGAGTAGGGAAG...................................................................................................................................................................................................1720.500.50-----------------------------------------------------------------------------------------------------0.50---
....................................................................................................................................................GGGGTGGGCCGGGAGGT.....................................................................................1720.500.50-0.50-------------------------------------------------------------------------------------------------------
........................................................................................................................................................................GTAGAGAACTGGGCCAG.................................................................1720.500.50-------------------------------------------0.50-------------------------------------------------------------
...............................................................................................................................................................................ACTGGGCCAGAAGGAG...........................................................1650.200.20-------------------------------------------------------------------------------------------------------0.20-
.............................GTGGCTCAGGCTGCAGAG...........................................................................................................................................................................................................1850.200.20-------------------0.20-------------------------------------------------------------------------------------
..............................TGGCTCAGGCTGCAGAG...........................................................................................................................................................................................................1780.120.12--------------------------------------------------------------------------------------------------------0.12

Antisense strand
GGCCTCCCTCTTAGGGCCGGGCGGTGCCCGTGGCTCAGGCTGCAGAGTAGGGAAGCGAGCGGCTGCCGAGGCACAGCGGCGATCCGGCGGGGGCGGAAAATGGCGGCGGCTTCGGAGGAGCTAAATGGCGCCGGGACCCCTGGGGGGTGGGGTGGGCCGGGAGGTTGAGTAGAGAACTGGGCCAGAAGGAGTGGAGACAGTAAGGAAGCCCTACTTGTTTTCTCGTGGTGTTCTATTTTTAGTTTTTATT
..........................................................................................................(((((.(((....(((....))).)))..(((((........))))).)))))...((((.(((.....))).))))...................................................................
.........................................................................................................106..........................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR038863(GSM458546)
MM603. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189785SRR040007(GSM532892)
G601T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040024(GSM532909)
G613N. (cervix)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)		SRR040019(GSM532904)
G701T. (cervix)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR191521(GSM715631)
92genomic small RNA (size selected RNA from t. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		GSM532872(GSM532872)
G652T. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
.............................................................................GGCGATCCGGCGGGGCCC........................................................................................................................................................... 181.000.00------------------------------1.00--------------------------------------------------------------------------
................................................................................................................................................................................................................ACCACGAGAAAACAAGTAGGG..................... 2111.001.00--------------------------------------------------------------------------1.00------------------------------
..................................................................................................................................................................................................................CACCACGAGAAAACAAGTAG.................... 2011.001.00-------1.00-------------------------------------------------------------------------------------------------
.........................................GCCGCTCGCTTCCCTACTCTGC........................................................................................................................................................................................... 2211.001.00-------1.00-------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................ACGAGAAAACAAGTAGGGCTTCCT........................ 2411.001.00--------------------------------------------------------------------------------------------1.00------------
......................................CGCTTCCCTACTCTGCAGC................................................................................................................................................................................................. 1911.001.001.00--------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CACGAGAAAACAAGTAGGGCTTCCTTA....................... 2711.001.00-----------------------------------------------------------------------------1.00---------------------------
.........................................................................................................................................................................................................GAGAAAACAAGTAGGGCTTCCTT.......................... 2311.001.00--------------------------------------------------1.00------------------------------------------------------
....................................................................................................................................................CCTCCCGGCCCACCCC...................................................................................... 1650.400.40-------------0.20----0.20--------------------------------------------------------------------------------------
.........................................................................................................................................................TCAACCTCCCGGCCC.................................................................................. 1540.250.25------------------0.25--------------------------------------------------------------------------------------