ID: uc003ugh.2_intron_12_0_chr7_77256993_f.5p
GENE: PTPN12(13)
chr7:77256943-77257192+


(1)
AGO1.ip 		(1)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(6)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(7)
SKIN

Sense strand
CATTGCTAGACATAATATAGCAGGAACAACACATTCAGGTGCTGAAAAAGGTAATAATATAGTGTCAAATACTTAAATGTCTTTCCTATGTGCTAGTCACTGTTTTAAGCACTTTAGCTGTATTGATTTATTATGTTTTATTCCACACTCTACCATAGAACCTACAGCAAAATCTGTCTTAGATACTAATTTTTTAATATAAGCTTTTAATGTATTGTTAACAATTTGGTCACATTATATTACTGGGTTT
.........................................................................................(((((.............)))))..........................................................................................................................................
.......................................................................................88...........................................................149...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577579(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR189785TAX577590(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532879(GSM532879)
G659N. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...........................................................................................................................TGATTTATTATGTTTTATATTT.........................................................................................................221236.006.00218.0011.003.001.00---1.00----------1.00------1.00-----
...........................................................................................................................TGATTTATTATGTTTTATGTTT.........................................................................................................22178.006.0076.001.00--1.00--------------------------
...........................................................................................................................TGATTTATTATGTTTTATATT..........................................................................................................21150.006.0048.001.00-1.00---------------------------
...........................................................................................................................TGATTTATTATGTTTTATAGTT.........................................................................................................22138.006.0035.00-3.00----------------------------
...........................................................................................................................TGATTTATTATGTTTTATTTTT.........................................................................................................2225.000.0019.005.001.00----------------------------
...........................................................................................................................TGATTTATTATGTTTTATAT...........................................................................................................20114.006.0013.001.00-----------------------------
...........................................................................................................................TGATTTATTATGTTTTATGTT..........................................................................................................21110.006.007.002.00--1.00--------------------------
...........................................................................................................................TGATTTATTATGTTTTATAGT..........................................................................................................2118.006.007.00-1.00----------------------------
...........................................................................................................................TGATTTATTATGTTTTGTGT...........................................................................................................207.000.006.00---------------1.00--------------
...........................................................................................................................TGATTTATTATGTTTTATTGTT.........................................................................................................227.000.007.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTAT.............................................................................................................1816.006.005.00--------------1.00---------------
...........................................................................................................................TGATTTATTATGTTTTGTTG...........................................................................................................206.000.005.00----------------------1.00-------
...........................................................................................................................TGATTTATTATGTTTTATGT...........................................................................................................2015.006.004.001.00-----------------------------
...........................................................................................................................TGATTTATTATGTTTTATTTT..........................................................................................................215.000.005.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTATGGTT.........................................................................................................2215.006.003.00-1.00-----------------1.00----------
...........................................................................................................................TGATTTATTATGTTTTATATTA.........................................................................................................2214.006.004.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTATCTTT.........................................................................................................2214.006.002.001.00-----1.00-----------------------
...........................................................................................................................TGATTTATTATGTTTTGTT............................................................................................................193.000.003.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTATATA..........................................................................................................2113.006.003.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTATGTTA.........................................................................................................2213.006.003.00------------------------------
.........ACATAATATAGCAGGAACAACACATTCAG....................................................................................................................................................................................................................2912.002.00-----2.00-------------------------
...........................................................................................................................TGATTTATTATGTTTTGTTT...........................................................................................................202.000.002.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTATTGT..........................................................................................................212.000.002.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTATA............................................................................................................1912.006.001.00--1.00---------------------------
.................................................................................................CACTGTTTTAAGCACTTTAG.....................................................................................................................................2011.001.00-------------------1.00-----------
....................CAGGAACAACACATTCAGGTGCTGAAAAAG........................................................................................................................................................................................................3011.001.00---------1.00---------------------
..................AGCAGGAACAACACATTCAGGT..................................................................................................................................................................................................................2211.001.00---------------------------1.00---
...........................................................................................................................TGATTTATTATGTTTTATCGTT.........................................................................................................2211.006.00----------------------------1.00--
...........................................................................................................................TGATTTATTATGTTTTACATT..........................................................................................................211.000.00-1.00-----------------------------
...........................................................................................................................TGATTTATTATGTTTTATAGAT.........................................................................................................2211.006.00-------------1.00-----------------
...........................................................................................................................TGATTTATTATGTTTTATTGTTT........................................................................................................231.000.001.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTGT.............................................................................................................181.000.001.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTATTG...........................................................................................................201.000.001.00------------------------------
....................CAGGAACAACACATTCAGGTGCTGAACAAG........................................................................................................................................................................................................301.000.00---------1.00---------------------
............................................................................................CTAGTCACTGTTTTAAGCACTTTA......................................................................................................................................2411.001.00------1.00------------------------
...........................................................................................................................TGATTTATTATGTTTTATAAA..........................................................................................................2111.006.001.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTATAG...........................................................................................................2011.006.00---1.00---------------------------
................................ATTCAGGTGCTGAAAAAG........................................................................................................................................................................................................1811.001.00-----------1.00-------------------
...........................................................................................................................TGATTTATTATGTTTTATTTTTA........................................................................................................231.000.00----1.00--------------------------
...........................................................................................................................TGATTTATTATGTTTTATTTCTT........................................................................................................231.000.00----1.00--------------------------
...........................................................................................................................TGATTTATTATGTTTTATGGTA.........................................................................................................2211.006.00--1.00----------------------------
................................................................................................TCACTGTTTTAAGCACTTTAG.....................................................................................................................................2111.001.00------1.00------------------------
...........................................................................................................................TGATTTATTATGTTTTATTT...........................................................................................................201.000.001.00------------------------------
...........................................................................................................................TGATTTATTATGTTTGTTT............................................................................................................191.000.001.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTATTTTG.........................................................................................................221.000.00---1.00---------------------------
..........CATAATATAGCAGGAACAAC............................................................................................................................................................................................................................2011.001.00--------1.00----------------------
.............................................................................................................................................TCCACACTCTACCATGTGA..........................................................................................191.000.00----------------------1.00--------
...........................................................................................................................TGATTTATTATGTTTTATGTAT.........................................................................................................2211.006.001.00------------------------------
.........................................................................................................................................................CATAGAACCTACAGCAAAATC............................................................................2111.001.00-----------------1.00-------------
.......AGACATAATATAGCAGGAAC...............................................................................................................................................................................................................................2011.001.00----------1.00--------------------
........GACATAATATAGCAGGAAC...............................................................................................................................................................................................................................1911.001.00--------------------------1.00----
...........................................................................................................................TGATTTATTATGTTTTGGT............................................................................................................191.000.001.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTGTGG...........................................................................................................201.000.00---1.00---------------------------
..........CATAATATAGCAGGAACACC............................................................................................................................................................................................................................201.000.00--------1.00----------------------
........GACATAATATAGCAGGAACAACAC..........................................................................................................................................................................................................................2411.001.00---------------------1.00---------
...........................................................................................................................TGATTTATTATGTTTTATAATA.........................................................................................................2211.006.00------------1.00------------------
.................................TTCAGGTGCTGAAAAAGGT......................................................................................................................................................................................................1911.001.00--------------1.00----------------
...........................................................................................................................TGATTTATTATGTTTTATTTTTT........................................................................................................231.000.001.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTATAA...........................................................................................................2011.006.001.00------------------------------
...........................................................................................................................TGATTTATTATGTTTTGTGA...........................................................................................................201.000.001.00------------------------------
.................................................................................................................................................................................................TTAATATAAGCTTTTAA........................................1730.330.33-----0.33-------------------------
........................................................................................................TTAAGCACTTTAGCT...................................................................................................................................1560.170.170.17------------------------------

Antisense strand
CATTGCTAGACATAATATAGCAGGAACAACACATTCAGGTGCTGAAAAAGGTAATAATATAGTGTCAAATACTTAAATGTCTTTCCTATGTGCTAGTCACTGTTTTAAGCACTTTAGCTGTATTGATTTATTATGTTTTATTCCACACTCTACCATAGAACCTACAGCAAAATCTGTCTTAGATACTAATTTTTTAATATAAGCTTTTAATGTATTGTTAACAATTTGGTCACATTATATTACTGGGTTT
.........................................................................................(((((.............)))))..........................................................................................................................................
.......................................................................................88...........................................................149...................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577579(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR189784SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR189785TAX577590(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532879(GSM532879)
G659N. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................................................................CCTACAGCAAAATCTGCTT....................................................................... 191.000.00------------------------1.00------
.......................................................................................................................................................................TCTAAGACAGATTTTG................................................................... 1650.400.40-----------------------------0.40-
...............................................ACTATATTATTACCTT........................................................................................................................................................................................... 1660.170.17------------------------------0.17