ID: uc003tyx.2_intron_6_0_chr7_73119555_r.3p
GENE: (3)
chr7:73119505-73119754-


(1)
AGO2.ip 		(1)
B-CELL 		(5)
BRAIN 		(7)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(2)
HELA 		(3)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGGGGTGAAGCTGCAGCTGGTGCAGCCCTGGCCCAGAATTGGGGGAGGGGGGCGGGCAGGCAGAGCCTTAGCCAGGGGAACAGGGGAGAACAGGGATCTTCCCAGAGCCTCCCACTGGGCCCCCTGGGCTGGAGGCTGAGCCTGCACATCAGTCCCCGCGGAGCCTAGGAGGCCTACCCCCACCCTTTCTACCTCCCCAGAGACGAAGGAGGAGCTGGAAGAACTCATGTCCGACATAAAGAAGACAGCA
..................................................(((..((((((..((((((((((.((((..((((((((....(((.....))).....))))).)))..))))...))))).)))))..)))))).......(((....))))))..((.((....)).)).....................................................................
..................................................51.......................................................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040036(GSM532921)
G243N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
.....................................................................................................................................................................TAGGAGGCCTACCCCCGCT..................................................................19110.000.0089.0021.00-----------------------------------
.....................................................................................................................................................................TAGGAGGCCTACCCCCGCTA.................................................................2035.000.0026.009.00-----------------------------------
....................................................................................................................................................................CTAGGAGGCCTACCCCCGCT..................................................................2020.000.0014.006.00-----------------------------------
.....................................................................................................................................................................TAGGAGGCCTACCCCCGC...................................................................1815.000.0012.002.00-------------------1.00---------------
....................................................................................................................................................................CTAGGAGGCCTACCCCCGCTA.................................................................217.000.002.005.00-----------------------------------
..........................................................................................................................................................................................................................................CATAAAGAAGACAGCACTAC204.000.00------------1.001.00------1.00-------1.00--------
......................................................................................................................................................................AGGAGGCCTACCCCCGCT..................................................................183.000.001.002.00-----------------------------------
...................................................................................................................................................................CCTAGGAGGCCTACCCCCGCT..................................................................213.000.002.001.00-----------------------------------
....................................................................................................................................................................CTAGGAGGCCTACCCCCGC...................................................................193.000.003.00------------------------------------
......................................................................................................................................................................AGGAGGCCTACCCCCGCTA.................................................................193.000.003.00------------------------------------
..........................................................................................................................................................................................................................................CATAAAGAAGACAGCACTA192.000.00-----------------------1.00-------1.00-----
.............................................................................................................................................................................................................AAGGAGGAGCTGGAAGAACT.........................2012.002.00-----2.00-------------------------------
..................................AGAATTGGGGGAGGGGATAT....................................................................................................................................................................................................202.000.00------1.00-1.00----------------------------
.....................................................................................................................................................................TAGGAGGCCTACCCCCGATA.................................................................202.000.002.00------------------------------------
.....................................................................................................................................................................TAGGAGGCCTACCCCCTCT..................................................................191.000.001.00------------------------------------
..................................AGAATTGGGGGAGGGCACC.....................................................................................................................................................................................................191.000.00------1.00------------------------------
.............................................................................................................................................................................................................AAGGAGGAGCTGGAACAGA..........................191.000.001.00------------------------------------
.............................................................................................................................................................................................................AAGGAGGAGCTGGAAGAACTC........................2111.001.00----------------1.00--------------------
....................................................................................................................................................................CTAGGAGGCCTACCCCCG....................................................................181.000.001.00------------------------------------
..............................................................................................................................................................................................................AGGAGGAGCTGGAAGAACTC........................2011.001.00---1.00---------------------------------
....................................................................................................................................................................CTAGGAGGCCTACCCCCGATA.................................................................211.000.001.00------------------------------------
..........................................................................................................................................................................................................ACGAAGGAGGAGCTGGAAGAA...........................2111.001.00--------------------------1.00----------
.....................................................................................................................................................................................................................................TCCGACATAAAGAAGACAGC.2011.001.00------------------------1.00------------
..........................................................................................................................................................................................................................................CATAAAGAAGACAGCACCAC201.000.00--------------------------------1.00----
....GTGAAGCTGCAGCTGGATA...................................................................................................................................................................................................................................191.000.00--------------1.00----------------------
......................................................................................................................................................AGTCCCCGCGGAGCCGCCT.................................................................................191.000.00-------------------1.00-----------------
.........................................................AGGCAGAGCCTTAGCTGG...............................................................................................................................................................................181.000.00------------------1.00------------------
............................................................................................................................................................................................................GAAGGAGGAGCTGGAAGAACTCATG.....................2511.001.00---1.00---------------------------------
...................................................................................................................................................................CCTAGGAGGCCTACCCCCGCTA.................................................................221.000.001.00------------------------------------
.........................................................................................................................................................................................................GACGAAGGAGGAGCTGGAAGAA...........................2211.001.00-----------------------------1.00-------
....................................................................................................................................................................................................CCAGAGACGAAGGAGGAGCT..................................2011.001.00---------1.00---------------------------
.................................................................................................................................................................................................................AGGAGCTGGAAGAACTGAGA.....................201.000.00---------------------------1.00---------
.......................................TGGGGGAGGGGGGCGGAGGC...............................................................................................................................................................................................201.000.00----1.00--------------------------------
.........................................................................................................................................................................................................GACGAAGGAGGAGCTGGAAGAACTCATGTC...................3011.001.00---1.00---------------------------------
...................................................................................................................................................................CCTAGGAGGCCTACCCCCGC...................................................................201.000.00-1.00-----------------------------------
........................................GGGGGAGGGGGGCGGGCGT...............................................................................................................................................................................................191.000.00-------------------------1.00-----------
.....................................................................................................................................................................TAGGAGGCCTACCCCCGATC.................................................................201.000.001.00------------------------------------
...................................................................................................................................................................CCTAGGAGGCCTACCCCCGATA.................................................................221.000.001.00------------------------------------
......................................................................................................................................................................AGGAGGCCTACCCCCGATA.................................................................191.000.001.00------------------------------------
..................................................................................................................................................................................CCCACCCTTTCTACCTC.......................................................1760.170.17-----------------------------------0.17-
.........................................................................................................................................................................................................................................ACATAAAGAAGACAGC.1680.120.12------------------------------------0.12

Antisense strand
GGGGGTGAAGCTGCAGCTGGTGCAGCCCTGGCCCAGAATTGGGGGAGGGGGGCGGGCAGGCAGAGCCTTAGCCAGGGGAACAGGGGAGAACAGGGATCTTCCCAGAGCCTCCCACTGGGCCCCCTGGGCTGGAGGCTGAGCCTGCACATCAGTCCCCGCGGAGCCTAGGAGGCCTACCCCCACCCTTTCTACCTCCCCAGAGACGAAGGAGGAGCTGGAAGAACTCATGTCCGACATAAAGAAGACAGCA
..................................................(((..((((((..((((((((((.((((..((((((((....(((.....))).....))))).)))..))))...))))).)))))..)))))).......(((....))))))..((.((....)).)).....................................................................
..................................................51.......................................................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040036(GSM532921)
G243N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
...............................................................................................................................................................................................................................CTTTATGTCGGACATGAG......... 1812.002.00--2.00----------------------------------
............................................................................................AGGCTCTGGGAAGATCCC............................................................................................................................................ 1812.002.00--2.00----------------------------------
......................................................................................................................................................................................TGGGGAGGTAGAAAGGG................................................... 1741.501.50-------1.50-----------------------------
......................................................................................................................................................................................CTGGGGAGGTAGAAAGGG.................................................. 1811.001.00----------1.00--------------------------
..............................................................................................GATCTTCCCAGAGCCTGC.......................................................................................................................................... 181.000.00----1.00--------------------------------
....................TGCAGCCCTGGCCCAGAAAA.................................................................................................................................................................................................................. 201.000.00---------------1.00---------------------
...................................................................................................TCCCAGAGCCTCCCACTGGGG.................................................................................................................................. 211.000.00----1.00--------------------------------
............................................................................................................................................................................................................GAAGGAGGAGCTGGAACTCG.......................... 201.000.00-----------1.00-------------------------
.......................................................................................................................................................................................CCTTTCTACCTCCCCCT.................................................. 171.000.00-----------------1.00-------------------
...............................................................................................................................................................................................CCTCCCCAGAGACGAAAAGC....................................... 201.000.00------------------------------1.00------
.........................................................................................................................................................................................CTTCGTCTCTGGGGAGGTAGAAA.......................................... 2311.001.00----------------------1.00--------------
...CCAGCTGCAGCTTCACC...................................................................................................................................................................................................................................... 1721.001.00---------------------------------0.500.50--
......................................................................................................................................................................................CCCTTTCTACCTCCCCAAA................................................. 190.250.00--------0.25----------------------------