ID: uc003txv.2_intron_5_0_chr7_72719095_r.3p
GENE: (4)
chr7:72719045-72719294-


(1)
AGO1.ip 		(1)
AGO2.ip 		(2)
B-CELL 		(5)
BRAIN 		(11)
BREAST 		(14)
CELL-LINE 		(7)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
HELA 		(3)
LIVER 		(1)
OTHER 		(12)
SKIN 		(1)
XRN.ip

Sense strand
GGTAAACAGTAGAGGGGGCTCCTGACCCATCAGTCTGGCTTGACAACCCATTCCCTCAACTGCGGATTCCGCCCATCTCTAGCTTATCACCCTGTTGATTTCTCCATAGCTGTGGTAACATTTGTTGCATGAATGGACCGTTGAAATGGGGCCTGGCAGGGAGAAATTCAGGAAATGAATGAATGGTTCTTCCCTGGCAGCCTCGATGACTTACGAGCCCTCAAGGGGAAGCATTTTCTCCTGGACCCCT
.........................................................................................(((((((......(((((.......(((((....)))))....))))).......))))))).(((.((((((((((((((.........)))))..)))).))))).)))..................................................
..........................................................................75...........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR040028(GSM532913)
G026N. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029130(GSM416759)
DLD2. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR040024(GSM532909)
G613N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
...............................................................................TAGCTTATCACCCTGTTGTTGA.....................................................................................................................................................2210.000.00-2.002.00-2.00---2.00--------------1.00--1.00------------------------------------
...............................................................................TAGCTTATCACCCTGTTGTTG......................................................................................................................................................216.000.00-2.001.00-1.00----------1.00--1.00--------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGTTTA.....................................................................................................................................................224.000.00-2.00-1.00-------------1.00---------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGT........................................................................................................................................................193.000.00-1.00-1.00---------------1.00-------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGTTTG.....................................................................................................................................................223.000.00-1.00-------------------1.00------1.00----------------------------------
...................................................................................................................TAACATTTGTTGCATGAATGGACCGTTGAAATGGGGCCTGGCAGGGAGAAATTCAGGAAATGAATGAATGGTTCTTCCCTGGCAG..................................................8513.003.00-----3.00---------------------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGTTC......................................................................................................................................................212.000.00--1.00----------------------------1.00-------------------------------
...............................................................................TAGCTTATCACCCTGTTGTTGT.....................................................................................................................................................222.000.00-1.001.00------------------------------------------------------------
...............................................................................................................................................................................TGAATGAATGGTTCTTCCCTGGCAG..................................................2531.331.33-------1.33-------------------------------------------------------
...............................................................................TAGCTTATCACCCTGATGT........................................................................................................................................................1951.200.20-0.40-0.200.20-0.20------------------------------------------------------0.20-
...............................................................................TAGCTTATCACCCTGTTGCTGA.....................................................................................................................................................221.000.00---1.00-----------------------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGCTT......................................................................................................................................................211.000.00-----------------------------1.00---------------------------------
..........................................................................................................................................................................................TTCTTCCCTGGCAGCGGA..............................................181.000.00------------1.00--------------------------------------------------
...........................................................................................................................................................................................................................CTCAAGGGGAAGCATGAT.............181.000.00---------1.00-----------------------------------------------------
.........TAGAGGGGGCTCCTGACT...............................................................................................................................................................................................................................181.000.00-----------1.00---------------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGGTGT.....................................................................................................................................................221.000.00----------1.00----------------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGTTTT.....................................................................................................................................................221.000.00-1.00-------------------------------------------------------------
....AACAGTAGAGGGGGCTCCTGACCCACAAG.........................................................................................................................................................................................................................291.000.00--------------------1.00------------------------------------------
...............................................................................TAGCTTATCACCCTGTTTCTG......................................................................................................................................................211.000.00-1.00-------------------------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGATTAC....................................................................................................................................................231.000.00------------------------------------1.00--------------------------
...............................................................................TAGCTTATCACCCTGTTGTTGG.....................................................................................................................................................221.000.00-1.00-------------------------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGTCGA.....................................................................................................................................................221.000.00---------1.00-----------------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGTCGT.....................................................................................................................................................221.000.00-1.00-------------------------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGTAGA.....................................................................................................................................................221.000.00---------------------------------1.00-----------------------------
...............................................................................TAGCTTATCACCCTGTTCTAC......................................................................................................................................................211.000.00--------------1.00------------------------------------------------
................................................................................AGCTTATCACCCTGTTGTTGA.....................................................................................................................................................211.000.00----------1.00----------------------------------------------------
...............................................................................TAGCTTATCACCCTGTTGATAAC....................................................................................................................................................231.000.00------------------------1.00--------------------------------------
...............................................................................TAGCTTATCACCCTGTTGATGA.....................................................................................................................................................221.000.00---1.00-----------------------------------------------------------
.............................................................................................................................................................................................................................CAAGGGGAAGCATTTTCTCCTGGAC....2530.670.67-----------------------------------------------------0.33---0.33-----
...............................................................................................................................................................................................................................AGGGGAAGCATTTTCTCCTGGAC....2330.670.67-------------------------------------------------0.33--0.33----------
.GTAAACAGTAGAGGGGGCTCCTGACCC..............................................................................................................................................................................................................................2730.670.67---------------------------------------0.67-----------------------
......................................................................................................................................................................TTCAGGAAATGAATGAATGGTT..............................................................2220.500.50-------------------------------------------0.50-------------------
.............................................................................................................................................................................AATGAATGAATGGTTCTT...........................................................1820.500.50------------------------------------------0.50--------------------
...............................................................................TAGCTTATCACCCTGACG.........................................................................................................................................................1850.400.20-----------------------------------------------------------0.200.20--
...............................................................................TAGCTTATCACCCTGATG.........................................................................................................................................................1850.400.20-0.20-0.20-----------------------------------------------------------
.....................................................................................ATCACCCTGTTGATTTCTCCATAGCTGTG........................................................................................................................................2930.330.33----------------------------------------0.33----------------------
............................................................................................................................................................................................................................TCAAGGGGAAGCATTTTCTCCTGGAC....2630.330.33-------------------------------------0.33-------------------------
...........................................................................................................................................................................................................................CTCAAGGGGAAGCATTTTCTCCTGG......2530.330.33--------------------------------------------------0.33------------
........................................................................................................................................................CTGGCAGGGAGAAATTCAGGAA............................................................................2230.330.33--------------------------------------0.33------------------------
.............................................................................................................................TGCATGAATGGACCGTT............................................................................................................1730.330.33------------------------------------------------0.33--------------
.GTAAACAGTAGAGGGGGCTCCTGACCCA.............................................................................................................................................................................................................................2830.330.33-----------0.33---------------------------------------------------
...............................................................................................................................................................................TGAATGAATGGTTCTTCCCTGGC....................................................2330.330.33--------------------------------------------------------0.33------
..............................................................................................................................GCATGAATGGACCGTTGA..........................................................................................................1830.330.33----------------------------------------------------------0.33----
.......................................................................................................CCATAGCTGTGGTAACATTTGTTGCATGAATGG..................................................................................................................3330.330.33-----------------------------------------------0.33---------------
..............................................................................................................................................................................................................................AAGGGGAAGCATTTTCTCCTGGAC....2430.330.33------------0.33--------------------------------------------------
.................................TCTGGCTTGACAACCCATT......................................................................................................................................................................................................1930.330.33---------------------------------------------------0.33-----------
...........................................................................................................................................................................................................................CTCAAGGGGAAGCATTTTCTCCTGGAC....2730.330.33-------------------------------------------------------0.33-------
.......................................................................................................................ATTTGTTGCATGAATGGACCGTT............................................................................................................2330.330.33--------------------------------------0.33------------------------
..........................................................................................................TAGCTGTGGTAACATTTGTT............................................................................................................................2030.330.33-------0.33-------------------------------------------------------
.......................................................................................................................................................................................................................................CATTTTCTCCTGGACCCCT1940.250.25----------------------------------------0.25----------------------
...............................................................................TAGCTTATCACCCTGCTG.........................................................................................................................................................1850.200.20---0.20-----------------------------------------------------------
...............................................................................TAGCTTATCACCCTGATCC........................................................................................................................................................1950.200.20-0.20-------------------------------------------------------------
...............................................................................TAGCTTATCACCCTG............................................................................................................................................................1550.200.20--------------0.20------------------------------------------------
...............................................................................TAGCTTATCACCCTGCTGG........................................................................................................................................................1950.200.20--0.20------------------------------------------------------------
...............................................................................TAGCTTATCACCCTGATGC........................................................................................................................................................1950.200.20-------------0.20-------------------------------------------------
...............................................................................TAGCTTATCACCCTGGTGT........................................................................................................................................................1950.200.20-0.20-------------------------------------------------------------
....AACAGTAGAGGGGGC.......................................................................................................................................................................................................................................1580.120.12--------------------------------------------------------------0.12

Antisense strand
GGTAAACAGTAGAGGGGGCTCCTGACCCATCAGTCTGGCTTGACAACCCATTCCCTCAACTGCGGATTCCGCCCATCTCTAGCTTATCACCCTGTTGATTTCTCCATAGCTGTGGTAACATTTGTTGCATGAATGGACCGTTGAAATGGGGCCTGGCAGGGAGAAATTCAGGAAATGAATGAATGGTTCTTCCCTGGCAGCCTCGATGACTTACGAGCCCTCAAGGGGAAGCATTTTCTCCTGGACCCCT
.........................................................................................(((((((......(((((.......(((((....)))))....))))).......))))))).(((.((((((((((((((.........)))))..)))).))))).)))..................................................
..........................................................................75...........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR040028(GSM532913)
G026N. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029130(GSM416759)
DLD2. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR040024(GSM532909)
G613N. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTTGT............................................ 2150.000.0050.00--------------------------------------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTTG............................................. 2012.000.0012.00--------------------------------------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTAGT............................................ 215.000.005.00--------------------------------------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTGGT............................................ 213.000.003.00--------------------------------------------------------------
..........................................ACAACCCATTCCCTCAATAG............................................................................................................................................................................................ 202.000.001.00-1.00------------------------------------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTTGC............................................ 212.000.002.00--------------------------------------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTTGTC........................................... 221.000.001.00--------------------------------------------------------------
..........................................ACAACCCATTCCCTCATTAG............................................................................................................................................................................................ 201.000.00----------------------1.00----------------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTTGTT........................................... 221.000.001.00--------------------------------------------------------------
..........................................ACAACCCATTCCCTCTTT.............................................................................................................................................................................................. 181.000.00----------------1.00----------------------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGGAG............................................... 181.000.00---------------------------1.00-----------------------------------
..........................................ACAACCCATTCCCTCAATGG............................................................................................................................................................................................ 201.000.00-------------------------1.00-------------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTAGTT........................................... 221.000.001.00--------------------------------------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTTGG............................................ 211.000.001.00--------------------------------------------------------------
..........................................ACAACCCATTCCCTCAGTGC............................................................................................................................................................................................ 201.000.00--------------------------------1.00------------------------------
........................................................................................................................................................................................GGTTCTTCCCTGGCAGCCTGT............................................. 211.000.00-------------1.00-------------------------------------------------
...............................................................................................................................................AAATGGGGCCTGGCATGTT........................................................................................ 191.000.00-----------------------------------1.00---------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTGG............................................. 201.000.001.00--------------------------------------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGACG............................................... 181.000.00------1.00--------------------------------------------------------
............................................................................................................................................................................AAATGAATGAATGGTGTCG........................................................... 191.000.00------------------------------1.00--------------------------------
.........................................................................................................................................................................................GTTCTTCCCTGGCAGCCTT.............................................. 191.000.001.00--------------------------------------------------------------
.....................................................................................................CTCCATAGCTGTGGTAACATTTGT............................................................................................................................. 241.000.00----------------------------------1.00----------------------------
..........................................................................................................................................................................................TTCTTCCCTGGCAGCCTCGATACA........................................ 241.000.00------1.00--------------------------------------------------------
........................................................................................................................................................................................TCGAGGCTGCCAGGGAAGAACC............................................ 2220.500.50--------------------------------------------0.50------------------
...........................................................................................................................................................................................AAGTCATCGAGGCTGCCAGGGAAGA...................................... 2520.500.50-------0.50-------------------------------------------------------
...........................................................................................................................................................................................CATCGAGGCTGCCAGGGAAGA.......................................... 2120.500.50-----------------------------------------0.50---------------------
..........................................................................................................................................................................................CATCGAGGCTGCCAGGGAAGAA.......................................... 2220.500.50---------------------------------------------0.50-----------------
........................................................................................................................................................................................................................GTCCAGGAGAAAATGCTTCCCCTTGAGGGC.... 3030.330.33------------------------------------------------------0.33--------
.............................................................................................................ATTCATGCAACAAATGTTACCACAG.................................................................................................................... 2530.330.33----------------------------------------------0.33----------------
...........................................................................................................................................................................................................................CAGGAGAAAATGCTTCCCCTTGAG....... 2430.330.33-------------------------------------0.33-------------------------