ID: uc003twp.2_intron_5_0_chr7_72422835_r.3p
GENE: (1)
chr7:72422785-72423034-


(2)
AGO2.ip
(2)
BREAST
(15)
CELL-LINE
(1)
CERVIX
(3)
LIVER
(2)
OTHER
(9)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
GCCTAGGTTAAGCACTCATTTCTTATTGGGATGACCACAAGAACTTCCCAGACTGGTCTCTCTGCTTCCAGACTGTCTCACTGCATTTTCCTTGAGGTTGACTGTAGGAAGCTCTAAAGGCAGATCTGATGCATTACTCCTCTGCTAAGCCTTTTTTTTTTTTTTTTTTTTTTTGAGAGAGTTTTGCTCTTGTTTCCCAGGCTGGATGGAGTGCCCTGGCGCGATCTTGGCTCACCGCAACCTCTGCCTC
................................................((((..(((.....(((...((((((((((....((...(((((..((.....))..))))))).....)))))).))))..)))..)))..))))..........................................................................................................
............................................45..................................................................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR189786SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCGAG..........................................................................2912.000.0011.001.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTCGAG............................................................................278.000.008.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCTGG.........................................................................306.000.006.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTCGGG............................................................................275.000.003.002.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCGG..........................................................................295.000.005.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCCGG..........................................................................295.000.005.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTCGG.............................................................................264.000.004.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTCAGG........................................................................314.000.004.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGGGG........................................................................313.000.003.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTCAAG............................................................................273.000.002.001.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTGGCC..............................................................................263.000.002.001.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCTGG..........................................................................293.000.003.00--------------------------------
...........................................................................................................................ATCTGATGCATTACTTTT.............................................................................................................183.000.00------2.001.00-------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTCGAG.............................................................................273.000.003.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTATTT............................................................................273.000.002.001.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCCCC..........................................................................293.000.003.00--------------------------------
...............................................................................................................................................................................................................................ATCTTGGCTCACCGCAACCTCTGTG..253.000.00-3.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCGGG.........................................................................303.000.003.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTTCGAG.........................................................................312.000.002.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTTTGGG.........................................................................312.000.002.00--------------------------------
...............................................................................................GGTTGACTGTAGGAAGTCTG.......................................................................................................................................202.000.00-----2.00---------------------------
................................................................................................................................................................................................................................TCTTGGCTCACCGCAACCTCTGCAG.252.000.001.001.00-------------------------------
...............................................................................................................................................................................................................................ATCTTGGCTCACCGCAACCTCTTG...242.000.00-2.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTTTC...........................................................................292.000.002.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCGGG..........................................................................292.000.002.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTCTGG............................................................................282.000.002.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTCGAG..........................................................................302.000.002.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTCTTG........................................................................312.000.002.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTGGC..............................................................................262.000.002.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTCCGG........................................................................312.000.002.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTCGG.............................................................................272.000.00-2.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTCCCG............................................................................272.000.002.00--------------------------------
...........................................................................................TTGAGGTTGACTGTAGGAAGCTCTG......................................................................................................................................252.000.00----2.00----------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTAAC...........................................................................282.000.002.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTTGGG..........................................................................302.000.001.001.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGTTTC.......................................................................322.000.002.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTACC.............................................................................262.000.002.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTAACC.........................................................................302.000.002.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTCTGC........................................................................311.000.001.00--------------------------------
.........................................................................................................................................................................................................................................ACCGCAACCTCTGCCTACGG201.000.00-1.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTCCT.............................................................................271.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCAGA.........................................................................301.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTAAAA.............................................................................271.000.001.00--------------------------------
..................................................................................................................................................................................................................................TTGGCTCACCGCAACCTCTGGGG.231.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTTGGAG.........................................................................311.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTCGGG...............................................................................251.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCCAC.........................................................................301.000.00-1.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTCCAG....................................................................................201.000.001.00--------------------------------
.........................................................................................................................................................................................................................................ACCGCAACCTCTGCCTGGGT201.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCGCG..........................................................................291.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTCG..............................................................................261.000.00-1.00-------------------------------
.....................................................................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGATTTT......................................................................311.000.00-----------------1.00---------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTAT...........................................................................281.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTCGGT............................................................................271.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTCAG..............................................................................261.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGAGGCG......................................................................331.000.001.00--------------------------------
...............................................................................................................................................................................................................................ATCTTGGCTCACCGCAACCTCTGCCTCGGG301.000.001.00--------------------------------
....................................................................................................................................................................................................................................GGCTCACCGCAACCTCTGCCTGGG241.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTAGGG.........................................................................301.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTATT.............................................................................261.000.00---1.00-----------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCCGT..........................................................................291.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTACGG.........................................................................301.000.001.00--------------------------------
....................................................................................................................................................GCCTTTTTTTTTTTTTTTTTTTTTCGGG..........................................................................281.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTCGGG............................................................................281.000.001.00--------------------------------
....................................................................................................................................................GCCTTTTTTTTTTTTTTTTTTTTTCTGC..........................................................................281.000.00-1.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTCCCC..........................................................................301.000.00-1.00-------------------------------
....................................................................................................................................................GCCTTTTTTTTTTTTTTTTTTTTTTTGAATCG......................................................................321.000.00---------1.00-----------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCGCC.........................................................................301.000.00-1.00-------------------------------
...................................................................................................................................CATTACTCCTCTGCTAAGCCTTTTTTTTTGA........................................................................................311.000.00--1.00------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTGGGG.............................................................................271.000.00-1.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTGGTT.............................................................................271.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTCGC.............................................................................261.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTGTA..............................................................................261.000.00-1.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTCTAA............................................................................271.000.001.00--------------------------------
................................................................................................................................................................................................................................TCTTGGCTCACCGCAACCTCTGCCTCATGC301.000.001.00--------------------------------
................................................................................................................................................................................................................................TCTTGGCTCACCGCAACCGAG.....211.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTCTC.........................................................................301.000.001.00--------------------------------
...............................................................................................................................................................................................................................ATCTTGGCTCACCGCAACCTCTGCCCCTG291.000.00------------------1.00--------------
...............................................................................................................................................................................................................................ATCTTGGCTCACCGCAACCCCGT....231.000.001.00--------------------------------
.......................................................................................................................................................................................................................................TCACCGCAACCTCTGCCTGGGT221.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTGGG...............................................................................251.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGGGTT.......................................................................321.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCAAG.........................................................................301.000.001.00--------------------------------
...................................................................................................................................................................................................................................TGGCTCACCGCAACCTCTGCCTGGG251.000.001.00--------------------------------
.........................................AACTTCCCAGACTGGTCTCTCTGCCTCC.....................................................................................................................................................................................281.000.00-1.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGCGTG.......................................................................321.000.001.00--------------------------------
.....................................................................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGACCG.......................................................................301.000.00------------1.00--------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGGTC........................................................................311.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTAAAC............................................................................271.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTCGG.....................................................................................191.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCCTT.........................................................................301.000.00---------1.00-----------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTCGAG................................................................................241.000.00-1.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTAGG.............................................................................261.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCTTG..........................................................................291.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCAC..........................................................................291.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGAACC.......................................................................321.000.00-1.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGAAGCT......................................................................331.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTCGAG...............................................................................251.000.001.00--------------------------------
.......................................................................................................................................................................................................................................TCACCGCAACCTCTGCCCCAG211.000.00-1.00-------------------------------
......................................................................................................................................................................................................................................CTCACCGCAACCTCTGCCTGGG221.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTCGG.................................................................................231.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTTCC...........................................................................291.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCAGG..........................................................................291.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCTA...........................................................................281.000.001.00--------------------------------
...................................................................................................................................................................................................................................TGGCTCACCGCAACCTCTGCCTCGCAG271.000.00-1.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTGCT.................................................................................231.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTAGTC............................................................................281.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCCCC.........................................................................301.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGGCC........................................................................311.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCTC...........................................................................281.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTAGG...........................................................................291.000.00-1.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTGGG..............................................................................261.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTCCT................................................................................241.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTAGG.............................................................................271.000.001.00--------------------------------
.................................................................................................................................................TAAGCCTTTTTTTTTTTTTGGC...................................................................................221.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCCCA.........................................................................301.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCCCT..........................................................................291.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTCTCT.........................................................................301.000.00--1.00------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGGGGG.......................................................................321.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTATAG............................................................................271.000.001.00--------------------------------
...................................................................................................................................................................................................................................TGGCTCACCGCAACCTCTGCCTGGGG261.000.001.00--------------------------------
......................................................................................................................................................................................................................................CTCACCGCAACCTCTGCCCCGG221.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGGGGT.......................................................................321.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTCAG.............................................................................271.000.001.00--------------------------------
...................................................................................................................................................................................................................................TGGCTCACCGCAACCTCTGCCTGCTC261.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGCAGC.......................................................................321.000.001.00--------------------------------
......................................................................................................................................................................................................................................CTCACCGCAACCTCTGCCTCGGG231.000.00-1.00-------------------------------
...............................................................................................................................................................................................................................ATCTTGGCTCACCGCAACCTCTGCAG.261.000.00-1.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTGGTC.............................................................................271.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTGCCC........................................................................311.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCGAT..........................................................................291.000.001.00--------------------------------
....................................................................................................................................................................................................................................GGCTCACCGCAACCTCTGCCCTGG241.000.001.00--------------------------------
...........................................................................................................................ATCTGATGCATTACTTTTT............................................................................................................191.000.00-------1.00-------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTCGG................................................................................241.000.00-1.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTCG.............................................................................271.000.001.00--------------------------------
...............................................................................................................................................................................................................................ATCTTGGCTCACCGCAACCTCTGGAG.261.000.001.00--------------------------------
...............................................................................................................................................................................................................................ATCTTGGCTCACCGCAACCTCTGCCCACC291.000.00-1.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTCGAG............................................................................281.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTTAGG..........................................................................301.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTCTGG........................................................................311.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTCC...............................................................................251.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTCGCT............................................................................271.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTCGA...........................................................................291.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTAGGG..........................................................................291.000.001.00--------------------------------
....................................................................................................................................................GCCTTTTTTTTTTTTTTTTTTTTTTTGAGCCTT.....................................................................331.000.00---1.00-----------------------------
................................................................................................................................................................TTTTTTTTTTTTTTGAGAGAGCGAC.................................................................251.000.00-1.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTCCTG........................................................................311.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTGGCC.............................................................................271.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTGGGC..............................................................................261.000.001.00--------------------------------
.....................................................................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGAACGG......................................................................311.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTCGG...........................................................................291.000.001.00--------------------------------
.....................................................................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGAAAGC......................................................................311.000.001.00--------------------------------
.....................................................................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGAGAGACCG...................................................................341.000.00---1.00-----------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTCAAG........................................................................311.000.00-1.00-------------------------------
...........................................................................................................................................................................................TCTTGTTTCCCAGGCTGGTGCC.........................................221.000.00-1.00-------------------------------
..........................................................................................................................................................................TTTTGAGAGAGTTTTCGCC.............................................................191.000.00--------------1.00------------------
.....................................................................................................................................................CCTTTTTTTTTTTTTTTTTTTTTTTGAATA.......................................................................301.000.00--1.00------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTCAGC............................................................................281.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTCCGC..........................................................................291.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTGGGC.............................................................................271.000.001.00--------------------------------
..............................................................................................................................................................TTTTTTTTTTTTTTTTGAGAGAGGGGG.................................................................271.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTGTG...............................................................................251.000.00-1.00-------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTACC..........................................................................291.000.001.00--------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTTAAC..........................................................................301.000.00-1.00-------------------------------
..................................................................................................................................................AAGCCTTTTTTTTTTTCGGC....................................................................................201.000.001.00--------------------------------
...................................................................................................................................................AGCCTTTTTTTTTTTTTTTTTTTTTTTCCAG........................................................................311.000.00-1.00-------------------------------
.....................................................................AGACTGTCTCACTGCATTTTCC...............................................................................................................................................................2230.670.67---------------------------0.33---0.33-
.................................................AGACTGGTCTCTCTGCTTCCAGA..................................................................................................................................................................................2320.500.50----------0.50----------------------
..................................................................................................TGACTGTAGGAAGCTCTAAAGGCAGATCTG..........................................................................................................................3020.500.50--0.50------------------------------
................................................CAGACTGGTCTCTCTGCTTCCAGAC.................................................................................................................................................................................2520.500.50----------0.50----------------------
.....................................CAAGAACTTCCCAGACTGGTCTCTCTGCT........................................................................................................................................................................................2920.500.50-----------------------0.50---------
.........................................................................................................................................................................................................CTGGATGGAGTGCCCTGGCGCG...........................2220.500.50-------------------0.50-------------
.............................................................................................................................................................................................TTGTTTCCCAGGCTGGATGGAGTGCCC..................................2720.500.50----------------------0.50----------
.............................................................................................GAGGTTGACTGTAGGAAGCTCT.......................................................................................................................................2230.330.33--------------------0.33------------
..............................ATGACCACAAGAACTTCCCAGA......................................................................................................................................................................................................2230.330.33-------------------------0.33-------
...............................................................GCTTCCAGACTGTCTCACTGCATT...................................................................................................................................................................2430.330.33----------0.33----------------------
.......................................................................................................GTAGGAAGCTCTAAAGG..................................................................................................................................1730.330.33--------------------0.33------------
....................................................................................ATTTTCCTTGAGGTTGACTGTAGGAAG...........................................................................................................................................2730.330.33----------------------------0.33----
..........................................................................................CTTGAGGTTGACTGTAGGAAGCTCTA......................................................................................................................................2630.330.33-------------------0.33-------------
.............................................................................................GAGGTTGACTGTAGGAAGCTCTAAAG...................................................................................................................................2630.330.33-----------------------------0.33---
............................................................................................TGAGGTTGACTGTAGGAAGCT.........................................................................................................................................2130.330.33------------------------------0.33--
.............................................................................................GAGGTTGACTGTAGGAA............................................................................................................................................1730.330.33-----0.33---------------------------
..........................................ACTTCCCAGACTGGTCTC..............................................................................................................................................................................................1850.200.20-0.20-------------------------------

Antisense strand
GCCTAGGTTAAGCACTCATTTCTTATTGGGATGACCACAAGAACTTCCCAGACTGGTCTCTCTGCTTCCAGACTGTCTCACTGCATTTTCCTTGAGGTTGACTGTAGGAAGCTCTAAAGGCAGATCTGATGCATTACTCCTCTGCTAAGCCTTTTTTTTTTTTTTTTTTTTTTTGAGAGAGTTTTGCTCTTGTTTCCCAGGCTGGATGGAGTGCCCTGGCGCGATCTTGGCTCACCGCAACCTCTGCCTC
................................................((((..(((.....(((...((((((((((....((...(((((..((.....))..))))))).....)))))).))))..)))..)))..))))..........................................................................................................
............................................45..................................................................................................145.......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR189786SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)
..................................................................................................................................................AAGCCTTTTTTTTTTTTTTTTTTTTTTCTGC......................................................................... 312.000.00--------2.00------------------------
................................................................................................................................................CTAAGCCTTTTTTTTTAGCG...................................................................................... 201.000.00----------------1.00----------------
................................................................................................................................................................................................................................TCTTGGCTCACCGCAAAAC....... 191.000.00-------------1.00-------------------
.......................................................................................................................................................................................................GGCTGGATGGAGTGCCCTGGCGCGATCGGG..................... 301.000.001.00--------------------------------
..............................................................................................................................................................................................................................GATCTTGGCTCACCGCAATGGC...... 221.000.00---------------1.00-----------------
..........................................................................................................................................................................................................................CGGTGAGCCAAGATCGCGC............. 1901.001.00-----------1.00---------------------
.......................................................ATGCAGTGAGACAGTCTGGAAGCAGAGAGAC.................................................................................................................................................................... 3120.500.50---------------------0.50-----------
...........................................................................................................ATGCATCAGATCTGCCTTTAGAGCTTC.................................................................................................................... 2720.500.50----0.50----------------------------
.............................GTTCTTGTGGTCATC.............................................................................................................................................................................................................. 1580.380.38------------------------0.38--------
.............................CAGTCTGGGAAGTTCTTGTGGTCATC................................................................................................................................................................................................... 2630.330.33-----------0.33---------------------
...............................................................AGTGAGACAGTCTGGAAGC........................................................................................................................................................................ 1930.330.33--------------------------0.33------
.................................................................AGTGAGACAGTCTGGAA........................................................................................................................................................................ 1740.250.25--------------------------------0.25