ID: uc003tvn.2_intron_6_0_chr7_66490010_f.3p
GENE: (7)
chr7:66514736-66514985+


(1)
AGO1.ip
(1)
BRAIN
(1)
BREAST
(13)
CELL-LINE
(2)
CERVIX
(1)
HELA
(1)
LIVER
(1)
OTHER
(1)
RRP40.ip
(6)
SKIN
(1)
TESTES

Sense strand
CTTGGCCGGGCTGGTCTCGATCTCCTGACCTCAGGTGATCCGCCTGCCCTGGCCTCCTAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCTCATAATGGACCTTTTTATTGATGCTAGGTGTTCATGATTGTGCTGTTATTTACATTGCACATTACCAATTCTGGATTTCATTCTTTTTTATTTTAATGCAGAGAGAAAAGGAACAGCAGGAAGAGAAGTCTGGTTTGTTCAGGAACATGGG
...............................................................((((((......(((....)))......))))))......(((((((((..((....))..))).))))))...((((((((.....)))..)))))..........................................................................................
.......................................................56..................................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR343334SRR189785SRR343335SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189787SRR189783DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189786GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR040011(GSM532896)
G529T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................................CATTGCACATTACCAAG..................................................................................1726.000.00--7.00-7.006.006.00----------------------------
.........................TGACCTCAGGTGATCCGCCTTGAA.........................................................................................................................................................................................................2417.000.00---11.00---6.00---------------------------
............................................................AATGCTGGGATTACAGGCGAGCC.......................................................................................................................................................................238.000.003.005.00---------------------------------
..............................TCAGGTGATCCGCCTGCCCTGGCATTT.................................................................................................................................................................................................274.000.00--------4.00--------------------------
........................................................................ACAGGCGTGAGCCACCGTGCCCGGCGTCC.....................................................................................................................................................293.000.00-3.00---------------------------------
................................AGGTGATCCGCCTGCCCTGGCCTCCCAAC.............................................................................................................................................................................................293.000.00-3.00---------------------------------
...........................................................AAATGCTGGGATTACAGGCGAGCC.......................................................................................................................................................................243.000.001.002.00---------------------------------
................................AGGTGATCCGCCTGCCCTGGCCCCCC................................................................................................................................................................................................262.000.00-2.00---------------------------------
................................AGGTGATCCGCCTGCCCTGGCCTCTC................................................................................................................................................................................................262.000.002.00----------------------------------
................................AGGTGATCCGCCTGCCCTGGCCCCC.................................................................................................................................................................................................252.000.001.001.00---------------------------------
.......................................................................TACAGGCGTGAGCCACCGTGCCCGGCGTCC.....................................................................................................................................................302.000.002.00----------------------------------
.......................................................................................................................................................CATTGCACATTACCAAGA.................................................................................182.000.00----1.00-1.00----------------------------
............................................................AATGCTGGGATTACAGGCGAACC.......................................................................................................................................................................232.000.002.00----------------------------------
.................................................................................................................................................................................................................GAACAGCAGGAAGAGAACC......................191.000.00--1.00--------------------------------
.........................TGACCTCAGGTGATCCGCCTGAAC.........................................................................................................................................................................................................241.000.00------------1.00----------------------
......................................................................................................................................................ACATTGCACATTACCAAG..................................................................................181.000.00--1.00--------------------------------
.............................................................ATGCTGGGATTACAGGCGAGTC.......................................................................................................................................................................221.000.00-1.00---------------------------------
....................................................................................................................................................................................................................CAGCAGGAAGAGAAGCCA....................181.000.00-----------------------1.00-----------
..............................................................................................................................................................................TTTCATTCTTTTTTATTTTAAG......................................................221.000.00------------------------1.00----------
.......................................................................................................................................................CATTGCACATTACCAAGATG...............................................................................201.000.00--1.00--------------------------------
..................GATCTCCTGACCTCAGGT......................................................................................................................................................................................................................1801.001.00----------------1.00------------------
..................................................................................................................................................................................................................AACAGCAGGAAGAGAAGCC.....................191.000.001.00----------------------------------
........................................................................ACAGGCGTGAGCCACCGTGCCCGGCGTCG.....................................................................................................................................................291.000.00-1.00---------------------------------
...................................TGATCCGCCTGCCCTGGCCCCCC................................................................................................................................................................................................231.000.00-1.00---------------------------------
...................ATCTCCTGACCTCAGGTGATCCGCTGG............................................................................................................................................................................................................271.000.00-1.00---------------------------------
.......................................................................................................................................................CATTGCACATTACCAATTTGCA.............................................................................221.000.00------------1.00----------------------
.......................CCTGACCTCAGGTGATCCGCCTGGTTT........................................................................................................................................................................................................271.000.00-----------------1.00-----------------
.......................................................................TACAGGCGTGAGCCACCGTGCCCCAGG........................................................................................................................................................271.000.00-1.00---------------------------------
.......................................................................................................................................................CATTGCACATTACCAAGTTG...............................................................................201.000.00---------1.00-------------------------
.......................................................................................................................................................CATTGCACATTACCAATTCGCCT............................................................................231.000.00--------------1.00--------------------
...........................................................................................................................................................................................................................AAGAGAAGTCTGGTTTGTTCAGGAACATGG.3021.001.00--------------------1.00--------------
.........................TGACCTCAGGTGATCCGCCTTTTA.........................................................................................................................................................................................................241.000.00-------------------1.00---------------
............................................................AATGCTGGGATTACAGGCGAGTC.......................................................................................................................................................................231.000.001.00----------------------------------
........................................................................................................................................................ATTGCACATTACCAATTTGCA.............................................................................211.000.00---------1.00-------------------------
........................................................................ACAGGCGTGAGCCACCGTGCCCGGGCGT......................................................................................................................................................281.000.001.00----------------------------------
..........................GACCTCAGGTGATCCGCCTTTAA.........................................................................................................................................................................................................231.000.00----------------------1.00------------
.............................................................ATGCTGGGATTACAGGCGAGCT.......................................................................................................................................................................221.000.00-1.00---------------------------------
................................................................................................................................................................................TCATTCTTTTTTATTTCGG.......................................................191.000.00-1.00---------------------------------
.......................................................................................................................................................CATTGCACATTACCAATTTG...............................................................................201.000.00-----1.00-----------------------------
.............................................................ATGCTGGGATTACAGGCGACCC.......................................................................................................................................................................221.000.001.00----------------------------------
..............................TCAGGTGATCCGCCTGCCCTGGCTGCC.................................................................................................................................................................................................271.000.00-1.00---------------------------------
........................................................................ACAGGCGTGAGCCACCGTGCCCGGCGGCA.....................................................................................................................................................291.000.001.00----------------------------------
..TGGCCGGGCTGGTCTCGATCTCCCAG..............................................................................................................................................................................................................................261.000.00-1.00---------------------------------
................................AGGTGATCCGCCTGCCCTGGCCCCCA................................................................................................................................................................................................261.000.00-1.00---------------------------------
......................................................................................................................................................................................................AGAGAGAAAAGGAACATGA.................................191.000.00---------------1.00-------------------
...............................................................................................................................................................................TTCATTCTTTTTTATTTTTCCA.....................................................221.000.00-1.00---------------------------------
............................................................AATGCTGGGATTACAGGCGCGC........................................................................................................................................................................221.000.00-1.00---------------------------------
...............................................................................................................................................................................................................AGGAACAGCAGGAAGAGAAGT......................2120.500.50--------------------------------0.50--
...............................................................................................................................................................................................................................GAAGTCTGGTTTGTTCAGGAACATGG.2620.500.50-----------------------------0.50-----
..............................................................................................................................GTGTTCATGATTGTGCTGT.........................................................................................................1920.500.50---------------------------0.50-------
...................................................................................................................................................................................................TGCAGAGAGAAAAGGAACAGCAGGA..............................2520.500.50------------------------------0.50----
...........................................................................................................................................................................................................GAAAAGGAACAGCAGGAAGAGAAGTCTGG..................2920.500.50--------------------------0.50--------
..............................................................................................................................................................................................................................AGAAGTCTGGTTTGTTCAGGAACA....2420.500.50-------------------------------0.50---
......................................................................................................................................................................................................AGAGAGAAAAGGAACAGCAGGAA.............................2320.500.50---------------------------------0.50-
.............................................................................................................................................................................................................................GAGAAGTCTGGTTTGTTCAGG........2120.500.50----------------------------------0.50
..............................................................................................................................................................................................................................AGAAGTCTGGTTTGTTCAGGAACATGGG2820.500.50----------------------------0.50------

Antisense strand
CTTGGCCGGGCTGGTCTCGATCTCCTGACCTCAGGTGATCCGCCTGCCCTGGCCTCCTAAAATGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCTCATAATGGACCTTTTTATTGATGCTAGGTGTTCATGATTGTGCTGTTATTTACATTGCACATTACCAATTCTGGATTTCATTCTTTTTTATTTTAATGCAGAGAGAAAAGGAACAGCAGGAAGAGAAGTCTGGTTTGTTCAGGAACATGGG
...............................................................((((((......(((....)))......))))))......(((((((((..((....))..))).))))))...((((((((.....)))..)))))..........................................................................................
.......................................................56..................................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR343334SRR189785SRR343335SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189787SRR189783DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189786GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR040011(GSM532896)
G529T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
........GGCTGGTCTCGATCTCCTGAGGCC.......................................................................................................................................................................................................................... 246.000.005.001.00---------------------------------
..TGGCCGGGCTGGTCTCGATCTCCTGAGCG........................................................................................................................................................................................................................... 292.000.002.00----------------------------------
............GGTCTCGATCTCCTGACCTCACTGG..................................................................................................................................................................................................................... 252.000.002.00----------------------------------
..........CTGGTCTCGATCTCCTGACCTGGCT....................................................................................................................................................................................................................... 251.000.001.00----------------------------------
.......................CCTGACCTCAGGTGATCCGCCTTTA.......................................................................................................................................................................................................... 251.000.00--1.00--------------------------------
........GGCTGGTCTCGATCTCCTGGGC............................................................................................................................................................................................................................ 221.000.00-1.00---------------------------------
...........TGGTCTCGATCTCCTGACCTCAGGTCGC................................................................................................................................................................................................................... 281.000.001.00----------------------------------
...........................................................................GGCGTGAGCCACCGTGCCCGGCCTCGGA................................................................................................................................................... 281.000.001.00----------------------------------
........GGCTGGTCTCGATCTCCTGACCTCAGGTC..................................................................................................................................................................................................................... 291.000.001.00----------------------------------
.......................CCTGACCTCAGGTGATCCGCCTGCTC......................................................................................................................................................................................................... 261.000.001.00----------------------------------
..TGGCCGGGCTGGTCTCGATCTCCTGAGC............................................................................................................................................................................................................................ 281.000.00-1.00---------------------------------
.............GTCTCGATCTCCTGACCTCAGGCG..................................................................................................................................................................................................................... 241.000.001.00----------------------------------
........GGCTGGTCTCGATCTCCTGACCTCAGGCC..................................................................................................................................................................................................................... 291.000.001.00----------------------------------
........GGCTGGTCTCGATCTCCTGACCTGGCT....................................................................................................................................................................................................................... 271.000.001.00----------------------------------
...........................................................................GGCGTGAGCCACCGTGCCCGGCCTCGTG................................................................................................................................................... 281.000.00-1.00---------------------------------
...........................................................................GGCGTGAGCCACCGTGCCCGGCCTCGG.................................................................................................................................................... 271.000.001.00----------------------------------
..............................................................................GTGAGCCACCGTGCCCGGCCTCATACCC................................................................................................................................................ 281.000.001.00----------------------------------
............................................................................GCGTGAGCCACCGTGCCCGACGT....................................................................................................................................................... 231.000.00---------1.00-------------------------
.............................................................ATGCTGGGATTACAGGCGTGAGAGA.................................................................................................................................................................... 251.000.00-------------1.00---------------------
........GGCTGGTCTCGATCTCCTGGCC............................................................................................................................................................................................................................ 221.000.001.00----------------------------------
...........................................................................GGCGTGAGCCACCGTGCCCGGCCTCGGG................................................................................................................................................... 281.000.001.00----------------------------------
.............................................................ATGCTGGGATTACAGGCGTGAGA...................................................................................................................................................................... 231.000.00-----------1.00-----------------------
....................................GATCCGCCTGCCCTGGCCTCCTAAACC........................................................................................................................................................................................... 271.000.00-1.00---------------------------------
..............................................................................................................................................................................................TTTAATGCAGAGAGATCA.......................................... 181.000.00----------1.00------------------------
...........................................................AAATGCTGGGATTACAGGCGTGAAAT..................................................................................................................................................................... 261.000.00------------------1.00----------------
..............................................................................................................TTTTTATTGATGCTATTG.......................................................................................................................... 181.000.00----------1.00------------------------
......CGGGCTGGTCTCGATCTCCTGACC............................................................................................................................................................................................................................ 241.000.001.00----------------------------------
.......................................................................................................................................................................................TTTTTATTTTAATGCACTTG............................................... 201.000.00--1.00--------------------------------
.........................................................................CAGGCGTGAGCCACCGTGCCCGAGA........................................................................................................................................................ 251.000.00---------------------1.00-------------
........GGCTGGTCTCGATCTCCTGACCTCAGG....................................................................................................................................................................................................................... 271.000.00-1.00---------------------------------
.....................CTCCTGACCTCAGGTGATCCGCCTCCAG......................................................................................................................................................................................................... 281.000.00-------------------------1.00---------
......CGGGCTGGTCTCGATCTCCTGACCTCACCC...................................................................................................................................................................................................................... 301.000.001.00----------------------------------
.TCGAGACCAGCCCGGCCAA...................................................................................................................................................................................................................................... 1901.001.00-----------1.00-----------------------
........................................................................................................................................................................................................AGAGAAAAGGAACAGCATTTG............................. 211.000.001.00----------------------------------
.............................................................................CGTGAGCCACCGTGCCCGGCCTGTGG................................................................................................................................................... 261.000.00-1.00---------------------------------
.............................................................................CGTGAGCCACCGTGCCCGGCCTACCG................................................................................................................................................... 261.000.001.00----------------------------------
........GGCTGGTCTCGATCTCCTGAGGCG.......................................................................................................................................................................................................................... 241.000.00-1.00---------------------------------
..............................................................................TTATGAGGCCGGGCACGGTGGCTCAC.................................................................................................................................................. 2620.500.500.50----------------------------------
...TGAGGTCAGGAGATCGAGACCAGCCCGGCC......................................................................................................................................................................................................................... 3080.250.25-0.25---------------------------------
....TGAGGTCAGGAGATCGAGACCAGCCCGGC......................................................................................................................................................................................................................... 2980.120.12-0.12---------------------------------