ID: uc003tuo.2_intron_8_0_chr7_65552374_f
GENE: (9)
chr7:65552324-65552765+


(1)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(6)
BREAST 		(8)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(11)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(5)
SKIN

Sense strand
GGCCATTGCAGGCAATCCCCTGGGTGTGGACCGAGAGCTGCTCCGAGCAGGTGAGACGTCCTGCCCCTCCTCCCCAGGGAGAATCACCCTCAGCACCCGCCAAGACCTGCAGACACACCTGAAACCAGAGGGCAGGGGCCTGTGGCTCCTGGTGAAACCTTCATTCATTGCCTATGGGCACTGAGGTCATCAAGTTCAGGGGTCACTCATGGCAGGGATGCCTGGTACTGAGAGACTCAGGGCTCCTGCCTCCCTCCTGGGACTGTGCAAAAGATCCCTCCCCCCAGCTGTTGCCCCACCCTGATCAGGGGAGGGGGCTGGGCAACCTAGTTGGGGGAGAGGGGGCCACTCCCTGTCCTCCAGCTTAGCCCTGCTTCCTCCCACCCCCCCAGAACTCAACTTTGGGGCCATCACTCTCAACAGCATGGATGCCACTAGTGAG
............................................................................................................................................................................................................................................................................................................(((.....((((((..((.((((.....((((((((((.((((((...)))))).))))))))))..)))).))..)))))).......)))..................................................
....................................................................................................................................................................................................................................................................................................293................................................................................................392................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR189783SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR343336SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTACG.........................................................................20116.000.00113.00---3.00--------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTACA.........................................................................206.000.004.00---2.00--------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTAC..........................................................................194.000.004.00------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTACGT........................................................................213.000.003.00------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTAA..........................................................................193.000.003.00------------------------------------------------
...................................................................................................................CACCTGAAACCAGAGGGCAGGG.................................................................................................................................................................................................................................................................................................................2212.002.00-1.00---1.00-------------------------------------------
............................................................................................................................................................................................................................................................CCTCCTGGGACTGTGCAAAAGATC......................................................................................................................................................................2412.002.00-------2.00-----------------------------------------
..............................................................................................................................AGAGGGCAGGGGCCTGTGGCT.......................................................................................................................................................................................................................................................................................................2112.002.00-1.00----1.00------------------------------------------
.........AGGCAATCCCCTGGGTGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00---2.00---------------------------------------------
..............ATCCCCTGGGTGTGGACCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2112.002.00--2.00----------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTGA...........................................................................182.000.00--------2.00----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCACG...........................................................................181.000.001.00------------------------------------------------
........................................................................................CTCAGCACCCGCCAAGACCTGCAGACAC......................................................................................................................................................................................................................................................................................................................................2811.001.00-----1.00-------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................CTCCCTGTCCTCCAGGAGT...........................................................................191.000.00------------------------------------1.00------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTACT.........................................................................201.000.001.00------------------------------------------------
................................GAGAGCTGCTCCGAGCAGAACT....................................................................................................................................................................................................................................................................................................................................................................................................221.000.00-1.00-----------------------------------------------
....................................................................................................CAAGACCTGCAGACACACCTGAAACCAGAGGGCAG...................................................................................................................................................................................................................................................................................................................3511.001.00--1.00----------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTGAC..........................................................................191.000.001.00------------------------------------------------
...........................................................................................................................................................................................................................................................CCCTCCTGGGACTGTGCAAAAGAT.......................................................................................................................................................................2411.001.00-1.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTGCTC.........................................................................201.000.00-----------------------------1.00-------------------
.......GCAGGCAATCCCCTGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------1.00-------------------------------
...................................................................................................................CACCTGAAACCAGAGGGCAGGGGC...............................................................................................................................................................................................................................................................................................................2411.001.00-1.00-----------------------------------------------
......................................................................................................................................................................................GAGGTCATCAAGTTCAGGGGTCACT...........................................................................................................................................................................................................................................2511.001.00-----1.00-------------------------------------------
...........GCAATCCCCTGGGTGTGGACCGA........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00---1.00---------------------------------------------
.............................................................................................................................................................................................................................................................................................................TGATCAGGGGAGGGGGCT...........................................................................................................................1811.001.00----------------------------------------1.00--------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTCCT.........................................................................201.000.001.00------------------------------------------------
..................................................................................................GCCAAGACCTGCAGACACACCTGAAACCAGAGGGCA....................................................................................................................................................................................................................................................................................................................3611.001.00--1.00----------------------------------------------
................CCCCTGGGTGTGGACCGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----------------------1.00--------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTACGTC.......................................................................221.000.001.00------------------------------------------------
...................CTGGGTGTGGACCGAGAGCTGCTCC..............................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------------------1.00---------
.....................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTCAACTTTGGGGCCATC..............................2311.001.00-1.00-----------------------------------------------
........................................................................................................................................................................................................................................................................................................................................AGTTGGGGGAGAGGGGGCC...............................................................................................1911.001.00------1.00------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTCAACAGCATGGATGCCAC.......2411.001.00---------1.00---------------------------------------
................................................................................................................................AGGGCAGGGGCCTGTGGC........................................................................................................................................................................................................................................................................................................1811.001.00------------------1.00------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................ACTCAACTTTGGGGCCATCACTCTCAACAG...................3011.001.00--------------------------------------1.00----------
..........................TGGACCGAGAGCTGCTCCGAGCAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................271.000.00-------------------------------1.00-----------------
......................................................................................................................................................................................GAGGTCATCAAGTTCAGGGGTCA.............................................................................................................................................................................................................................................2311.001.00-1.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTACC.........................................................................201.000.001.00------------------------------------------------
..........GGCAATCCCCTGGGTGTGGACCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---1.00---------------------------------------------
........................................................................................................................................................................................GGTCATCAAGTTCAGCCG................................................................................................................................................................................................................................................181.000.00-----------1.00-------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTAT..........................................................................191.000.001.00------------------------------------------------
....................TGGGTGTGGACCGAGAGCTGCTCCGAGCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................3311.001.00----------1.00--------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................CACTCCCTGTCCTCCAGCTT............................................................................2011.001.00-------------------1.00-----------------------------
..................................................................................................GCCAAGACCTGCAGACACACC...................................................................................................................................................................................................................................................................................................................................2111.001.00-1.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTAAT.........................................................................201.000.001.00------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................CTCCCTGTCCTCCAGGCGC...........................................................................191.000.00--1.00----------------------------------------------
....................................................................................................................................................................................................................................................................................................................GGGAGGGGGCTGGGCAAA....................................................................................................................181.000.00---------------------------1.00---------------------
........................TGTGGACCGAGAGCTGCTCCGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00--------------------------1.00----------------------
.......................................................................................................................................................................................................................GGATGCCTGGTACTGAGAGAC..............................................................................................................................................................................................................2111.001.00---1.00---------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................GAACTCAACTTTGGGGCCATCACTC..........................2511.001.00-----1.00-------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................CTCCCTGTCCTCCAGGAGA...........................................................................191.000.00---------------------1.00---------------------------
......................................................................................................................................................................................................................................AGAGACTCAGGGCTCCTG..................................................................................................................................................................................................1811.001.00----------------------------------1.00--------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTATG..........................................................................191.000.001.00------------------------------------------------
.........................GTGGACCGAGAGCTGCTCCGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00--1.00----------------------------------------------
..........................TGGACCGAGAGCTGCTCCGAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................231.000.00---------1.00---------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTATTT........................................................................211.000.001.00------------------------------------------------
................................................................................................................................................................................................................................GTACTGAGAGACTCACAGC.......................................................................................................................................................................................................191.000.00----------------------------1.00--------------------
.............................................................................................................................................................................ATGGGCACTGAGGTCATCAAGT.......................................................................................................................................................................................................................................................2211.001.00------1.00------------------------------------------
......................................................................................................................................................................................................................................................TGCCTCCCTCCTGGGACTG.................................................................................................................................................................................1911.001.00---------------------------------1.00---------------
.........AGGCAATCCCCTGGGTGTGGACCGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00------------------------------1.00------------------
..............................................................................................................AGACACACCTGAAACGAA..........................................................................................................................................................................................................................................................................................................................181.000.00------------------------------------------1.00------
.............................................................................................................................................................................................................................................................................AAAGATCCCTCCCCCCAGC..........................................................................................................................................................1911.001.00-----------------------1.00-------------------------
.............................................................................................................................................................................................................................................................................................................................................................TCCCTGTCCTCCAGCTTAAA.........................................................................201.000.001.00------------------------------------------------
...........................................................................................................................................CTGTGGCTCCTGGTGAAA.............................................................................................................................................................................................................................................................................................1811.001.00-------------------------1.00-----------------------
.........AGGCAATCCCCTGGGCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................1950.600.20-----------------0.20-------------------------0.40-----
..........................TGGACCGAGAGCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................1550.200.20------------------------------------------------0.20
.........AGGCAATCCCCTGGGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................1850.200.20----------------------------------------------0.20--
.........AGGCAATCCCCTGGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................1750.200.20-----------------------------------------------0.20-
.........AGGCAATCCCCTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................1550.200.20---------------------------------------------0.20---

Antisense strand
GGCCATTGCAGGCAATCCCCTGGGTGTGGACCGAGAGCTGCTCCGAGCAGGTGAGACGTCCTGCCCCTCCTCCCCAGGGAGAATCACCCTCAGCACCCGCCAAGACCTGCAGACACACCTGAAACCAGAGGGCAGGGGCCTGTGGCTCCTGGTGAAACCTTCATTCATTGCCTATGGGCACTGAGGTCATCAAGTTCAGGGGTCACTCATGGCAGGGATGCCTGGTACTGAGAGACTCAGGGCTCCTGCCTCCCTCCTGGGACTGTGCAAAAGATCCCTCCCCCCAGCTGTTGCCCCACCCTGATCAGGGGAGGGGGCTGGGCAACCTAGTTGGGGGAGAGGGGGCCACTCCCTGTCCTCCAGCTTAGCCCTGCTTCCTCCCACCCCCCCAGAACTCAACTTTGGGGCCATCACTCTCAACAGCATGGATGCCACTAGTGAG
............................................................................................................................................................................................................................................................................................................(((.....((((((..((.((((.....((((((((((.((((((...)))))).))))))))))..)))).))..)))))).......)))..................................................
....................................................................................................................................................................................................................................................................................................293................................................................................................392................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR189783SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191546(GSM715656)
152genomic small RNA (size selected RNA from . (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR343336SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
............................................................................................................................CCAGAGGGCAGGGGCCTGTCTCC....................................................................................................................................................................................................................................................................................................... 232.000.00------------2.00------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................TCCTCCCACCCCCCCATT................................................. 181.000.00--------------1.00----------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................TCCTCCCACCCCCCCACGG................................................ 191.000.00--------------1.00----------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................TCCTCCCACCCCCCCACGGG............................................... 201.000.00---------------1.00---------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................TTCCTCCCACCCCCCCAAT................................................. 191.000.00-----1.00-------------------------------------------
............................GACCGAGAGCTGCTCCTATG.......................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00--------------------------------1.00----------------
........................................................................................................................................................................................................................................................................................................CACCCTGATCAGGGGAGCA............................................................................................................................... 191.000.00-------------------------------------1.00-----------
......................................................................................CCCTCAGCACCCGCCA.................................................................................................................................................................................................................................................................................................................................................... 161.000.00-----------------------------------------1.00-------
.....................................................................................................................................................................................................................................................................................CTCCCCCCAGCTGTTAG.................................................................................................................................................... 171.000.00----------1.00--------------------------------------
.......................................................................................................................................GGGCCTGTGGCTCCTGGTTC............................................................................................................................................................................................................................................................................................... 201.000.00-------------1.00-----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................CCCCCCCAGAACTCAGGTG........................................ 191.000.00-----------------------------------1.00-------------
..............................................................................................................................................................................................................................................................................................................................................................................AGCCCTGCTTCCTCCCAGGTC....................................................... 211.000.00----------------1.00--------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................TCCTCCCACCCCCCCACTG................................................ 191.000.00--------------------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................................................................................CCTCCCACCCCCCCATAT................................................ 181.000.00---------------1.00---------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................CTTCCTCCCACCCCCCCAGGG................................................ 211.000.00----------------1.00--------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................GCCCTGCTTCCTCCCAAGA........................................................ 191.000.00------------------------1.00------------------------
..........................................................................................................................................................................................................................TGCCTGGTACTGAGAACAA............................................................................................................................................................................................................. 191.000.00-----------1.00-------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................CTCCCACCCCCCCAGAACTCAG........................................... 221.000.00-------------1.00-----------------------------------
.............................................................................................................................................................................................................................................................................................................CCCCCTCCCCTGATCA............................................................................................................................. 1630.330.33--------------------------------------------0.33----