ID: uc003tsv.2_intron_1_0_chr7_63365117_f.3p
GENE: (2)
chr7:63374302-63374551+


(1)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(10)
CELL-LINE 		(4)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
GCCACATGTCTGTTGCCTATAGACATATCTACGTGTTTTCACCTATGTAAATACTGCCCCTACTTTGGTTATGACATCTTTTTTTCCTTGTTTTTTTTTTTTTTCCAGTTTCAGATAGGTTTTTTTTTTTTTAGAAAGAAAACTTTAAAACAGAATCAAAAGAACAGAAATCAGTTATCTGTCCTCTTCCTTCCTCACAGGTTTGAGACTATGGTTAGGTGGTGAGGAAGGCAGGCTCAGCACCCAAGCC
............................................................................(((((((...(((((((...................))))))).............)))))))...............................................................................................................
..........................................................................75..............................................................139.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038858(GSM458541)
MEL202. (cell line)		SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................TTTTTTCCTTGTTTTTTTTTTCAAG..................................................................................................................................................253.000.001.001.00----1.00---------------------
........................................................................................TGTTTTTTTTTTTTTTCCAGTTTCAG........................................................................................................................................2613.003.003.00---------------------------
..................................................................................................................ATAGGTTTTTTTTTTTTCCCC...................................................................................................................212.000.002.00---------------------------
..........................................................................CATCTTTTTTTCCTTTAAG.............................................................................................................................................................192.000.00---1.00--1.00---------------------
.......................................................................................TTGTTTTTTTTTTTTTTCGCGT.............................................................................................................................................222.000.00-2.00--------------------------
..............................................................................TTTTTTTCCTTGTTTTTTTTTTTCTTC.................................................................................................................................................272.000.00-2.00--------------------------
....................................................................................TCCTTGTTTTTTTTTTTTTATAC...............................................................................................................................................232.000.002.00---------------------------
...........................................................................................TTTTTTTTTTTTTCCAGTTTGTCT.......................................................................................................................................241.000.001.00---------------------------
....................................................................................................................AGGTTTTTTTTTTTTTAGAGGC................................................................................................................221.000.001.00---------------------------
......................................................................................CTTGTTTTTTTTTTTTTTCGGCG.............................................................................................................................................231.000.001.00---------------------------
....................................................................................TCCTTGTTTTTTTTTTTTAACT................................................................................................................................................221.000.001.00---------------------------
.................................................................................TTTTCCTTGTTTTTTTTTTTTTTAATT..............................................................................................................................................271.000.001.00---------------------------
............................................................................................TTTTTTTTTTTTCCAGTTTCAG........................................................................................................................................2221.001.000.500.50--------------------------
.................................................................................TTTTCCTTGTTTTTTTTTTTTTTCAGC..............................................................................................................................................271.000.001.00---------------------------
.................................................................................TTTTCCTTGTTTTTTTTTTTTAATT................................................................................................................................................251.000.00--1.00-------------------------
....................................................................................TCCTTGTTTTTTTTTTTTTATGT...............................................................................................................................................231.000.001.00---------------------------
.....................................................................................CCTTGTTTTTTTTTTTTACAG................................................................................................................................................211.000.00---1.00------------------------
................................................................................................................AGATAGGTTTTTTTTTTTTTTGAG..................................................................................................................241.000.00-1.00--------------------------
..................................................................................TTTCCTTGTTTTTTTTTTTTTTCCAGTTTCAG........................................................................................................................................3211.001.001.00---------------------------
........................................................................................TGTTTTTTTTTTTTTTCGGTA.............................................................................................................................................211.000.001.00---------------------------
.............................................................................CTTTTTTTCCTTGTTCAGT..........................................................................................................................................................191.000.00--1.00-------------------------
............................................................................................TTTTTTTTTTTTCCAGTTTTAGT.......................................................................................................................................231.000.001.00---------------------------
..............................................................................TTTTTTTCCTTGTTTTTTTTTTC.....................................................................................................................................................231.000.001.00---------------------------
...........................................................................ATCTTTTTTTCCTTGTGTC............................................................................................................................................................191.000.00--1.00-------------------------
...................................................................................TTCCTTGTTTTTTTTTTTTTTGGGG..............................................................................................................................................251.000.00-1.00--------------------------
...........................................................................................TTTTTTTTTTTTTCCAGTTTCAGATAG....................................................................................................................................2711.001.00--1.00-------------------------
................................................................................TTTTTCCTTGTTTTTTTTTTTTTG..................................................................................................................................................241.000.00-----1.00----------------------
..................................................................................................................ATAGGTTTTTTTTTTTTCGAG...................................................................................................................211.000.00-1.00--------------------------
...................................................................................TTCCTTGTTTTTTTTTTTTTATTT...............................................................................................................................................241.000.00--1.00-------------------------
................................................................................TTTTTCCTTGTTTTTTTTTTTTTTCAGTC.............................................................................................................................................291.000.00-1.00--------------------------
.......................................................................................TTGTTTTTTTTTTTTTTCGGTC.............................................................................................................................................221.000.001.00---------------------------
...............................................................................TTTTTTCCTTGTTTTTTTTTTTGGTT.................................................................................................................................................261.000.001.00---------------------------
.......................................................................................TTGTTTTTTTTTTTTTTCCAGTTTC..........................................................................................................................................2511.001.001.00---------------------------
...................................................................................TTCCTTGTTTTTTTTTTTAGA..................................................................................................................................................211.000.00--1.00-------------------------
........................................................................................TGTTTTTTTTTTTTTTCCGTTG............................................................................................................................................221.000.001.00---------------------------
.......................................................................................TTGTTTTTTTTTTTTTTCGCG..............................................................................................................................................211.000.001.00---------------------------
...............................................................................TTTTTTCCTTGTTTTTTTTGTAG....................................................................................................................................................231.000.001.00---------------------------
..................................................................................................................ATAGGTTTTTTTTTTGATT.....................................................................................................................191.000.001.00---------------------------
....................................................................................................................AGGTTTTTTTTTTTTTAGTTCG................................................................................................................221.000.00-1.00--------------------------
..................................................................................................................ATAGGTTTTTTTTTTTTCTGA...................................................................................................................211.000.001.00---------------------------
.........................................................................................GTTTTTTTTTTTTTTCCAGTTTCAG........................................................................................................................................2511.001.001.00---------------------------
..................................................................................................................ATAGGTTTTTTTTTTTTTGGC...................................................................................................................211.000.00-1.00--------------------------
..............................................................................................TTTTTTTTTTCCAGTTTCAGC.......................................................................................................................................211.000.001.00---------------------------
.................................................................................TTTTCCTTGTTTTTTTTTTTTTCCAG...............................................................................................................................................261.000.001.00---------------------------
................................................................................TTTTTCCTTGTTTTTTTTTTTTTTCC................................................................................................................................................2611.001.00-1.00--------------------------
......................................................................................CTTGTTTTTTTTTTTTTTCCGGGG............................................................................................................................................241.000.001.00---------------------------
.....................................................................................CCTTGTTTTTTTTTTTAAAG.................................................................................................................................................201.000.00---1.00------------------------
........................................................................................TGTTTTTTTTTTTTTTCCGCCC............................................................................................................................................221.000.00-1.00--------------------------
........................................................................................TGTTTTTTTTTTTTTTCGGCT.............................................................................................................................................211.000.001.00---------------------------
...................................................................................TTCCTTGTTTTTTTTATTG....................................................................................................................................................191.000.00-----1.00----------------------
........................................................................................TGTTTTTTTTTTTTTTCCAGTTTC..........................................................................................................................................2411.001.00-1.00--------------------------
...............................................................................TTTTTTCCTTGTTTTTTTTTGT.....................................................................................................................................................221.000.00--1.00-------------------------
.....................................................................................CCTTGTTTTTTTTTTTTTATAT...............................................................................................................................................221.000.00--1.00-------------------------
...........................................................................ATCTTTTTTTCCTTGTTCATT..........................................................................................................................................................211.000.00--1.00-------------------------
..........................................................................................TTTTTTTTTTTTTTCCAGTTAACG........................................................................................................................................241.000.00--1.00-------------------------
..............................................................................TTTTTTTCCTTGTTTTTTTATCA.....................................................................................................................................................231.000.00--1.00-------------------------
..................................................................................................................ATAGGTTTTTTTTTTTTCGTT...................................................................................................................211.000.00-1.00--------------------------
..............................................................................TTTTTTTCCTTGTTTTTTTGGT......................................................................................................................................................221.000.00--1.00-------------------------
....................................................................................TCCTTGTTTTTTTTTTTTACAC................................................................................................................................................221.000.001.00---------------------------
............................................................................................TTTTTTTTTTTTCCAGTTTGGGG.......................................................................................................................................231.000.001.00---------------------------
...............................................................................TTTTTTCCTTGTTTTTTTTTTTTTTCCCTG.............................................................................................................................................301.000.00--1.00-------------------------
...............................................................................TTTTTTCCTTGTTTTTTTTTTC.....................................................................................................................................................221.000.001.00---------------------------
.................................................................................TTTTCCTTGTTTTTTTTTTGGG...................................................................................................................................................221.000.001.00---------------------------
...........................................................................................TTTTTTTTTTTTTCCAGTTATGG........................................................................................................................................231.000.001.00---------------------------
.....................................................................................CCTTGTTTTTTTTTTTTTTGGG...............................................................................................................................................221.000.00---1.00------------------------
........................................................................................TGTTTTTTTTTTTTTTCGGTC.............................................................................................................................................211.000.00-1.00--------------------------
........................................................................................TGTTTTTTTTTTTTTTCCAGGGG...........................................................................................................................................231.000.001.00---------------------------
...................................................TACTGCCCCTACTTTTA......................................................................................................................................................................................171.000.00-----------1.00----------------
................................................................................TTTTTCCTTGTTTTTTTTTTTTTTGGCA..............................................................................................................................................281.000.00-1.00--------------------------
...............................................................................TTTTTTCCTTGTTTTTTTTTTTTTGAG................................................................................................................................................271.000.00-1.00--------------------------
.............................................................................................TTTTTTTTTTTCCAGTTTCGGTG......................................................................................................................................231.000.001.00---------------------------
................................................................................TTTTTCCTTGTTTTTTTTTTTTTTTCAG..............................................................................................................................................281.000.001.00---------------------------
...............................................................................TTTTTTCCTTGTTTTTTTTTTGGT...................................................................................................................................................241.000.00--1.00-------------------------
.................................................................................TTTTCCTTGTTTTTTTTTTTTTCAG................................................................................................................................................251.000.001.00---------------------------
............................................................................................TTTTTTTTTTTTCCAGTTTCAGC.......................................................................................................................................2321.001.000.500.50--------------------------
.......................................................................................................................TTTTTTTTTTTTTAGAAA.................................................................................................................1801.001.00-------1.00--------------------
....................................................................................TCCTTGTTTTTTTTTTTTTTCTG...............................................................................................................................................231.000.00-1.00--------------------------
.......................................................................................TTGTTTTTTTTTTTTTTCCAACAG...........................................................................................................................................241.000.00---1.00------------------------
........................................................................................TGTTTTTTTTTTTTTTCCAGTG............................................................................................................................................221.000.00-1.00--------------------------
...............................................................................TTTTTTCCTTGTTTTTTTTTTTTTTTTG...............................................................................................................................................281.000.00--1.00-------------------------
................................................................................................................AGATAGGTTTTTTTTTTTTTGA....................................................................................................................221.000.001.00---------------------------
.......................................................................................TTGTTTTTTTTTTTTTTCCATCTG...........................................................................................................................................241.000.00-1.00--------------------------
..................................................................................TTTCCTTGTTTTTTTTTCAAA...................................................................................................................................................211.000.00--1.00-------------------------
..............................................................................TTTTTTTCCTTGTTTTTTTTTTCT....................................................................................................................................................241.000.001.00---------------------------
....................................................................................TCCTTGTTTTTTTTTTTTTTCAGT..............................................................................................................................................241.000.001.00---------------------------
....................................................................................................................AGGTTTTTTTTTTTTTAGTTCT................................................................................................................221.000.001.00---------------------------
..................................................................................................................ATAGGTTTTTTTTTTTGGC.....................................................................................................................191.000.00-1.00--------------------------
................................................................................................TTTTTTTTCCAGTTTCAGATAGGCT.................................................................................................................................251.000.001.00---------------------------
...........................................................................................TTTTTTTTTTTTTCCAGTTTCAG........................................................................................................................................2320.500.500.50---------------------------
...........................................................................................TTTTTTTTTTTTTCCAGTTTCAGCAG.....................................................................................................................................2620.500.50--0.50-------------------------
...........................................................................................TTTTTTTTTTTTTCCAGTTTCAGC.......................................................................................................................................2420.500.50-0.50--------------------------
...............................................................................TTTTTTCCTTGTTTTTTTTTTTTGAG.................................................................................................................................................2660.330.17-0.33--------------------------
.............................................................................................TTTTTTTTTTTCCAGTTTCAG........................................................................................................................................2130.330.330.33---------------------------
........................................................................................................................................................................................................................AGGTGGTGAGGAAGGC..................1640.250.25-----------------------0.25----
........................................................................................................................................................................................................GTTTGAGACTATGGT...................................1550.200.20------------------------0.20---
...............................................................................TTTTTTCCTTGTTTTTTTTTTTT....................................................................................................................................................2360.170.17-0.17--------------------------
...............................................................................TTTTTTCCTTGTTTTTTTTTTTTGAC.................................................................................................................................................2660.170.17-0.17--------------------------
..............................................................................TTTTTTTCCTTGTTTTTTTT........................................................................................................................................................2080.120.120.12---------------------------

Antisense strand
GCCACATGTCTGTTGCCTATAGACATATCTACGTGTTTTCACCTATGTAAATACTGCCCCTACTTTGGTTATGACATCTTTTTTTCCTTGTTTTTTTTTTTTTTCCAGTTTCAGATAGGTTTTTTTTTTTTTAGAAAGAAAACTTTAAAACAGAATCAAAAGAACAGAAATCAGTTATCTGTCCTCTTCCTTCCTCACAGGTTTGAGACTATGGTTAGGTGGTGAGGAAGGCAGGCTCAGCACCCAAGCC
............................................................................(((((((...(((((((...................))))))).............)))))))...............................................................................................................
..........................................................................75..............................................................139.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191613(GSM715723)
66genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038858(GSM458541)
MEL202. (cell line)		SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................AGAGGACAGATAACTGATTT............................................................... 2021.501.50----------------0.50--0.500.50-------
......................................................................................................................................................................AGAGGACAGATAACTGATTTC............................................................... 2121.501.50----------1.00-------0.50---------
..................................................................................................................................................AAAACAGAATCAAAACGT...................................................................................... 181.000.00-1.00--------------------------
................................................................................................................................................................................ATCTGTCCTCTTCCTGCCA....................................................... 191.000.00---------------1.00------------
..................................................................................TTTCCTTGTTTTTTTTGGG..................................................................................................................................................... 191.000.00--------------1.00-------------
..................................................................................TTTCCTTGTTTTTTTTTGGCC................................................................................................................................................... 211.000.00-------------1.00--------------
..................................................................................TTTCCTTGTTTTTTTTTGGCT................................................................................................................................................... 211.000.00----1.00-----------------------
..................................................................................TTTCCTTGTTTTTTTTTGGTT................................................................................................................................................... 211.000.00----1.00-----------------------
.........................................................................................GTTTTTTTTTTTTTTCCAGGAG........................................................................................................................................... 221.000.00------------1.00---------------
...............................................................................................................................................TTTAAAACAGAATCAACCA........................................................................................ 191.000.00---------1.00------------------
..................................................................................TTTCCTTGTTTTTTTTTGGGT................................................................................................................................................... 211.000.00----1.00-----------------------
............................................................................................................................................................................AGTTATCTGTCCTCTTCC............................................................ 181.000.00--------1.00-------------------
..........................................................................................................................................................................AAGAGGACAGATAACTGA.............................................................. 1820.500.50-----------------0.50----------
........................................................................................................................................................................AGAGGACAGATAACTGATT............................................................... 1920.500.50---------------------0.50------
.........................................................................................................................................................................GGAAGAGGACAGATAACTGAT............................................................ 2120.500.50----------------------0.50-----
..........................................................................................................................................................................GAGGACAGATAACTGA................................................................ 1660.170.17-------------------------0.17--
..............................................................................................................................................................................................................................GAGCCTGCCTTCCTCA............ 1670.140.14---------------------------0.14
...............................................................................................................................................................................................................................CTGAGCCTGCCTTCCTC.......... 1770.140.14--------------------------0.14-