ID: uc003tpk.2_intron_17_0_chr7_50848434_r.5p
GENE: GRB10(1)
chr7:50849921-50850170-


(1)
AGO2.ip
(3)
B-CELL
(3)
BRAIN
(14)
BREAST
(9)
CELL-LINE
(8)
CERVIX
(3)
HEART
(2)
OTHER
(30)
SKIN

Sense strand
GGCGCACACGCAGCGACCCCGTGCGGCCAGTGCTGCCGCCCGCTCTCCAGGTACTCAGGTGGGCTCCGCCGCGGGCGCTGGGCGGTGGGCGGTGGGCGGTGGGCGCGAGCCGGGGCGGCGGGCGGATCGGCCTGCGCAGGCTGCAGAGGCCCCGGCCGCGGCGGACAGGGCCCGGGAGGGAGGCGGGGAGGTCTTGCCGCGCGGCCCCCTGCCCGCCTGCCGCGGGCTCGCTGCAGTCCGAGATCCCGAG
.......................................................................................................((((.((((((((.((((((......))))))((.....))....))))))))))))..........................................................................................
..............................................................................................95...............................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782TAX577589(Rovira)
total RNA. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040029(GSM532914)
G026T. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
TAX577741(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189785TAX577453(Rovira)
total RNA. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
...................................................................................................TGGGCGCGAGCCGGGC.......................................................................................................................................16221.006.002.00---3.00---1.00-2.00----2.00-2.001.00-------1.001.000.50-0.50------1.001.001.00-----------1.00--1.00--------------------
...................................................................................................TGGGCGCGAGCCGGGCCC.....................................................................................................................................18218.006.002.00-2.00-1.001.00-1.002.00-1.00-1.00--------1.00-1.00--------1.00-------------1.00--------1.00--------1.001.00---------
...................................................................................................TGGGCGCGAGCCGGGCC......................................................................................................................................17217.006.002.00------------1.00-------1.00-1.002.001.00--------1.001.00------1.00--1.00-1.00----1.00----1.001.00--1.00-------------
...................................................................................................TGGGCGCGAGCCGGGCCCT....................................................................................................................................1929.006.00---1.00-2.00------1.00-------------1.00--1.00-----------1.00--1.00----1.00-------------------------
...................................................................................................TGGGCGCGAGCCGGG........................................................................................................................................1526.006.00---0.500.50----------------------0.501.000.500.50------------------------------------0.500.500.500.500.50---
...................................................................................................................................................................................................................................TCGCTGCAGTCCGAGGATC....193.000.00-3.00-------------------------------------------------------------------------
..........................................................................................GGTGGGCGGTGGGCGCGAA.............................................................................................................................................193.000.00---------3.00-----------------------------------------------------------------
.........................................................................................................................................AGGCTGCAGAGGCCCCGGC..............................................................................................1912.002.00-------2.00-------------------------------------------------------------------
...............................................................................GGGCGGTGGGCGGTGGGGC........................................................................................................................................................192.000.00--------------------2.00------------------------------------------------------
.......................................................................................GGCGGTGGGCGGTGGGGGGG...............................................................................................................................................202.000.00--2.00------------------------------------------------------------------------
........................................................................................GCGGTGGGCGGTGGGGAG................................................................................................................................................182.000.00-------------------2.00-------------------------------------------------------
..................................................................................................................GCGGCGGGCGGATCGCTG......................................................................................................................181.000.00----------------------1.00----------------------------------------------------
.................................................................................................GGTGGGCGCGAGCCGGACCC.....................................................................................................................................201.000.00--------------1.00------------------------------------------------------------
...................................................................................................TGGGCGCGAGCCGGGATC.....................................................................................................................................1821.006.00------------------------------------------------1.00--------------------------
..................................................................................................GTGGGCGCGAGCCGGGCC......................................................................................................................................181.000.00-------------------------------------------1.00-------------------------------
...................................................................................................................................................................................................................................TCGCTGCAGTCCGAGGAGC....191.000.00----------------1.00----------------------------------------------------------
...........................................................................................................AGCCGGGGCGGCGGGGCGG............................................................................................................................191.000.00----------------------1.00----------------------------------------------------
...................................................................................................TGGGCGCGAGCCGGGCTCG....................................................................................................................................1921.006.00--1.00------------------------------------------------------------------------
...................................................................................................TGGGCGCGAGCCGGGCCCG....................................................................................................................................1921.006.00--------------1.00------------------------------------------------------------
................................CTGCCGCCCGCTCTCTTG........................................................................................................................................................................................................181.000.00-1.00-------------------------------------------------------------------------
..................................................................................................GTGGGCGCGAGCCGGGCCCT....................................................................................................................................201.000.00------------------------------------------------------------1.00--------------
......................................................................GCGGGCGCTGGGCGGCTG..................................................................................................................................................................181.000.00------------------------------------1.00--------------------------------------
...................................................................................................TGGGCGCGAGCCGGGGCCGG...................................................................................................................................201.000.00-----1.00---------------------------------------------------------------------
..........................................................................................................GAGCCGGGGCGGCGGGACCC............................................................................................................................201.000.00-------------------------------1.00-------------------------------------------
...................................................................................................................................................................................................................................TCGCTGCAGTCCGAGTCTC....191.000.00-1.00-------------------------------------------------------------------------
...................................................................................................TGGGCGCGAGCCGGGCGC.....................................................................................................................................1821.006.00-------------------------1.00-------------------------------------------------
...................................................................................................TGGGCGCGAGCCGGGCGCG....................................................................................................................................1921.006.00--------------1.00------------------------------------------------------------
............................................................................................................................................................................................................................CGCGGGCTCGCTGCAGTCCGAG........2211.001.001.00--------------------------------------------------------------------------
...........................................................................................................AGCCGGGGCGGCGGGCGGAGGCC........................................................................................................................231.000.00-----------1.00---------------------------------------------------------------
...................................................................................................................................................................................................................................TCGCTGCAGTCCGAGTTTC....191.000.00-1.00-------------------------------------------------------------------------
..........................................................................................................GAGCCGGGGCGGCGGCCA..............................................................................................................................181.000.00----------------------------------------1.00----------------------------------
...................................................................................................TGGGCGCGAGCCGGGCGTG....................................................................................................................................1921.006.00------------1.00--------------------------------------------------------------
.........................................................................................................................................................GGCCGCGGCGGACAGGGCTATG...........................................................................221.000.00----------------1.00----------------------------------------------------------
...................................................................................................TGGGCGCGAGCCGGGTCT.....................................................................................................................................1821.006.00-------------1.00-------------------------------------------------------------
....................................................................................................................................................GCCCCGGCCGCGGCGTG.....................................................................................171.000.00-----------------------------------------------------------1.00---------------
...........................................................................................................................................................................................................................................GTCCGAGATCCCGAGATC181.000.00---------------------------------1.00-----------------------------------------
....................................................................................................GGGCGCGAGCCGGGGC......................................................................................................................................1620.500.50------------------------------------------------------------------0.50--------
..................................................................CGCCGCGGGCGCTGGG........................................................................................................................................................................1630.330.33------------------------------0.33--------------------------------------------
.................................................................................GCGGTGGGCGGTGGGCGG.......................................................................................................................................................1850.200.20--------------------------------0.20------------------------------------------

Antisense strand
GGCGCACACGCAGCGACCCCGTGCGGCCAGTGCTGCCGCCCGCTCTCCAGGTACTCAGGTGGGCTCCGCCGCGGGCGCTGGGCGGTGGGCGGTGGGCGGTGGGCGCGAGCCGGGGCGGCGGGCGGATCGGCCTGCGCAGGCTGCAGAGGCCCCGGCCGCGGCGGACAGGGCCCGGGAGGGAGGCGGGGAGGTCTTGCCGCGCGGCCCCCTGCCCGCCTGCCGCGGGCTCGCTGCAGTCCGAGATCCCGAG
.......................................................................................................((((.((((((((.((((((......))))))((.....))....))))))))))))..........................................................................................
..............................................................................................95...............................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782TAX577589(Rovira)
total RNA. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040029(GSM532914)
G026T. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040036(GSM532921)
G243N. (cervix)
TAX577741(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189785TAX577453(Rovira)
total RNA. (breast)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577746(Rovira)
total RNA. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
TAX577740(Rovira)
total RNA. (breast)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040012(GSM532897)
G648N. (cervix)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
............................................................................................................GCCGGGGCGGCGGGCGGA............................................................................................................................ 181.000.00---1.00-----------------------------------------------------------------------
..............................TGCTGCCGCCCGCTCGGG.......................................................................................................................................................................................................... 181.000.00--------------------------------------------------------------1.00------------
..............................................................GCTCCGCCGCGGGCGGG........................................................................................................................................................................... 171.000.00---1.00-----------------------------------------------------------------------
..........................................................................................................................................................................................................GGCCCCCTGCCCGCCTGAGAG........................... 211.000.00-----------1.00---------------------------------------------------------------
..........................................................................................................................................................................................................GGCCCCCTGCCCGCCCGGC............................. 191.000.00------1.00--------------------------------------------------------------------
....................................................................................................................................................GCCCCGGCCGCGGCGGA..................................................................................... 171.000.00---1.00-----------------------------------------------------------------------
..................................CCTGGAGAGCGGGCGGC....................................................................................................................................................................................................... 1711.001.00-----------------------------------------------------1.00---------------------
.................................................................CCGCCGCGGGCGCTGGGG....................................................................................................................................................................... 181.000.00------------------1.00--------------------------------------------------------
...........................................................................................................AGCCGGGGCGGCGGGTCTC............................................................................................................................ 191.000.00--------------------------------------------------------1.00------------------
.............................................................................................................CCGGGGCGGCGGGCGAAGA.......................................................................................................................... 191.000.00---------------------------------------------------------------1.00-----------
............................................................GGGCTCCGCCGCGGGGAGG........................................................................................................................................................................... 191.000.00------1.00--------------------------------------------------------------------
..........................................................................................GGTGGGCGGTGGGCGCGCG............................................................................................................................................. 191.000.00--------------------------------------------------1.00------------------------
............................................................GGGCTCCGCCGCGGGGGG............................................................................................................................................................................ 181.000.00------1.00--------------------------------------------------------------------
..............................................................CGCCCAGCGCCCGCGGCGGAGC...................................................................................................................................................................... 2211.001.00-----------1.00---------------------------------------------------------------
............................................................................................................GCCGGGGCGGCGGGCGG............................................................................................................................. 171.000.00-------------1.00-------------------------------------------------------------
........................................................................................................CGCCGCCCCGGCTCGC.................................................................................................................................. 1630.330.33-------------------------------0.33-------------------------------------------
...................................................................................................................................................CGCCGCGGCCGGGGCC....................................................................................... 1640.250.25------------------------------------------------------------------------0.25--
.....................................................................................................................................................CCCCGGCCGCGGCGGTT.................................................................................... 170.220.00---------------------------------0.11----------------------------------------0.11
.....................................................................................................................................................CCGCCGCGGCCGGGG...................................................................................... 1590.110.11-------------------------------------------------------------------------0.11-