ID: uc003tlz.2_intron_2_0_chr7_44880612_r.3p
GENE: H2AFV(2)
chr7:44880562-44880811-


(1)
AGO1.ip 		(1)
AGO2.ip 		(4)
B-CELL 		(11)
BRAIN 		(23)
BREAST 		(17)
CELL-LINE 		(30)
CERVIX 		(9)
HEART 		(4)
HELA 		(1)
KIDNEY 		(13)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(31)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
TATGCAGAGGTTAAAGATTTTGGACAGATTACCAGAACAGAGACACAGGCCCTGGGAACTATTGATGCGTAATAGGTTTGGCTTCTGATATGTGTGATCAAGTTTTTTATTATTTCATGCTTACATTGTTCAGCCTTTGATTACAGTCAGTGCAATGTTAAGACTCTGCAGTGCTTCCCACTAAGACATCTCTCTTTTAGTTTCCTGTGGGCCGCATCCACAGACACTTGAAGACTCGCACCACAAGCCA
..............................................................................................................................................((((.((.((((..((....))..)))).))......(((((((........)))))))...))))..........................................
..............................................................................................................................................143..............................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR040032(GSM532917)
G603N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040012(GSM532897)
G648N. (cervix)		SRR040024(GSM532909)
G613N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR040042(GSM532927)
G428N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040018(GSM532903)
G701N. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029126(GSM416755)
143B. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR040027(GSM532912)
G220T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040037(GSM532922)
G243T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR029127(GSM416756)
A549. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532879(GSM532879)
G659N. (cervix)		SRR040043(GSM532928)
G428T. (cervix)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532886(GSM532886)
G850T. (cervix)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532878(GSM532878)
G691T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM532875(GSM532875)
G547N. (cervix)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR040006(GSM532891)
G601N. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		GSM532876(GSM532876)
G547T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189785
...................................................................................................................................................CAGTGCAATGTTAAGAGGGC...................................................................................20137.000.0027.008.007.0012.0014.0012.00-2.006.004.007.00-3.005.005.002.00------1.00---1.00---------1.00---2.002.00---2.00----1.002.00---1.00--2.00--1.00----1.00-------------------------------------1.00-----1.001.00---------------1.001.00--------1.00----------------
...................................................................................................................................................CAGTGCAATGTTAAGGGC.....................................................................................18106.000.0018.003.0014.008.005.009.00-3.004.003.001.00-2.001.00-2.001.00---------3.00-1.00------2.00-1.00----1.00-2.00--1.002.001.00--1.00-2.001.00--------1.00-----2.00-1.001.00-----------1.00-----1.001.00--------------1.00-1.00-------1.00----1.00----------1.001.00-------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGGG....................................................................................1970.000.0015.005.002.004.004.00--2.001.005.002.001.003.003.002.002.001.00-1.00--1.00--2.00-----------2.001.001.00--1.00---1.001.00---------------------------2.001.00-------------------------------------1.001.00----1.00---------1.00------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGG.....................................................................................1863.000.001.0020.001.00-1.00-1.007.00---5.00----1.00-4.00-4.004.003.00--2.00-2.00---3.00------------------1.00----------1.00----------------------1.00------------------1.00--------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGGCA....................................................................................1932.000.00--1.00--------------------5.002.00---2.00------1.00-1.00----1.00------1.00--1.00---2.00------1.00--------1.00--1.002.00---1.00-----1.00-1.00------1.001.00---1.00-1.00-----1.00---------------1.00-----------1.00-----------------
...................................................................................................................................................CAGTGCAATGTTAAGGGA.....................................................................................1814.000.00--1.003.00-3.00----1.00----------------------1.00------------------------------1.00----------------------------------------1.00------1.00---1.00---------1.00---------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGGGA...................................................................................2012.000.001.001.003.002.001.001.00----------------------------------1.00-------------------------------------1.00--------1.00------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGG......................................................................................179.000.00------------------------------------------1.00-1.00--------1.00---------1.00---------1.00---1.00---------------1.00---1.00----------------------1.00---------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGT.....................................................................................187.000.00-1.00---------3.00-------------2.00-1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGGAA....................................................................................196.000.00--3.001.00------1.00-------------1.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGTGC...................................................................................204.000.00----1.00-3.00---------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TTGATTACAGTCAGTGCAATGTTAAGACTCTGCAGTGCTTCCCACTAAGACATCTCTCTTTTAG..................................................6414.004.00-----------------------------4.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGGGT...................................................................................203.000.00-------1.00-------------1.00---------1.00--------------------------------------------------------------------------------------------------------------------------
...................................AACAGAGACACAGGCCCTGGGAACTATTGAT........................................................................................................................................................................................3113.003.00--------------------------------3.00-------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGTG....................................................................................193.000.00------1.00-1.00-----------1.00-------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGTGT...................................................................................203.000.00--1.00---2.00---------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGTTC...................................................................................203.000.00------2.00----------------------------------------------------------------1.00----------------------------------------------------------------------------------
.........................AGATTACCAGAACAGAGACACAGGCCCCGGG..................................................................................................................................................................................................313.000.00-----------------3.00----------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GACACTTGAAGACTCGCA..........1823.003.00-----------------------------------------------1.50-------------------------------1.00---------------------------------------------------0.50----------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGTT....................................................................................193.000.00------2.00----------------------------------------------------------------1.00----------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGGTC...................................................................................203.000.00------2.00--1.00------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGG.......................................................................................163.000.00----------------------------1.00-----1.00-----------------------------------------------------------------------------------------------1.00-----------------------
...........................................................................................................................................................................................................................ACAGACACTTGAAGACTCG............1922.502.50---------------------------------1.50------------------------------------------------------------------------1.00-----------------------------------------------
....................................................................................................................................................AGTGCAATGTTAAGAGGGC...................................................................................192.000.00----------------------------------1.00---1.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGAAA....................................................................................192.000.00--1.001.00------------------------------------------------------------------------------------------------------------------------------------------------------
...................................AACAGAGACACAGGCCCTGGGAACCAT............................................................................................................................................................................................272.000.00-----------------2.00----------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGTTG...................................................................................202.000.00------2.00---------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGACACTTGAAGACTCGCACC........2122.002.00---------------------------1.00--0.50---------------------------------------------------0.50-----------------------------------------------------------------------
.................................................................................................................................................................................................................................ACTTGAAGACTCGCACCACA.....2022.002.00------------------------------1.00----------------------------------0.50--------------------------------------------------------------------------------0.50-------
...................................................................................................................................................CAGTGCAATGTTAAGAGAGC...................................................................................202.000.001.00---------------------1.00-----------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGAA.....................................................................................182.000.00---2.00------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGCC.....................................................................................182.000.00--1.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGCAT...................................................................................202.000.00----------------------------------------------------------------------------------------------1.00----------------------------1.00------------------------------
............................................................................................................................................................................................................................CAGACACTTGAAGACTCGCA..........2021.501.50-------------------------------------------0.50---------------------------------0.50-0.50--------------------------------------------------------------------------
..................................................................................................................................................................................................................................CTTGAAGACTCGCACCACAAGCCA2421.501.50------------------------------0.50----------------------------0.50-------------------------------------------------------------------------------0.50--------------
...........................................................................................................................................................................................................................ACAGACACTTGAAGACTCGCAC.........2221.501.50----------------------------------------------1.00-------------------------------------------------------------------------------------------------0.50---------
...................TTGGACAGATTACCAGAACAGAG................................................................................................................................................................................................................2311.001.00-----------------------------------------------------------------------------------------------------------------------------1.00----------------------------
...................................AACAGAGACACAGGCCCTGGGAACTACTG..........................................................................................................................................................................................291.000.00--------------------------------1.00-------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGACGCC...................................................................................2011.001.00------------------------------------------------------------------------------------------------------------------------------------------1.00---------------
...............................................................................................................................................................................................CTCTTTTAGTTTCCTGGATG.......................................201.000.00---------------------------------------1.00------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CAGACACTTGAAGACTCGCAC.........2121.001.00--------------------------------------------------------------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................................................GGGCCGCATCCACAGACACTTGAAGACT..............2821.001.00---------------------------------------------------------------------------------1.00------------------------------------------------------------------------
..............................................................................................................................................ACAGTCAGTGCAATGTTAAGACTCTG..................................................................................2611.001.00-----------------------------------------------------------------------------------1.00----------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGCGGG....................................................................................191.000.001.00---------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................ATCTCTCTTTTAGTTTCTGG...........................................201.000.00-----------------1.00----------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGTTGT....................................................................................191.000.00------1.00---------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGGCC...................................................................................201.000.00---------------1.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAAGGC...................................................................................201.000.00---------------------------------------------------------------------------------------------------------------------------------------1.00------------------
..........................................................................................................................................................................................................................CACAGACACTTGAAGACTCGCACC........2421.001.00---------------------------------1.00------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGGA....................................................................................191.000.00--1.00-------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ACAGACACTTGAAGACTCGCACC........2321.001.00----------------0.50------------------------------------------------0.50----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TCCACAGACACTTGAAGACTCGCATA........2621.000.50----------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................ACTCGCACCACAAGCAGT181.000.00----------------------------------1.00-----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................AGTGCAATGTTAAGAGGG....................................................................................181.000.00---------------1.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGCAT....................................................................................191.000.00------------------------------------------------------------1.00---------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................CATCCACAGACACTTGAAGACC..............221.000.00---------------------------------------------------------1.00------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................CCACAGACACTTGAAGACTCGC...........2221.001.00----------------------------------0.50---------------------------------------------------------------0.50-------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGACGGC...................................................................................2011.001.00------------------------------------------------------------------1.00---------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGGGC....................................................................................191.000.00------------1.00---------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GACACTTGAAGACTCGCT..........181.000.00-----------------------------------------------------------1.00----------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CACTTGAAGACTCGCACCATA.....2121.000.50-------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TCCCACTAAGACATCTCTCTTTTAGA.................................................261.000.00--------------------------------------------------------------------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGGCG....................................................................................191.000.00-------------------------------------------------------------------1.00--------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TCCACAGACACTTGAAGACT..............2021.001.00------------------0.50-----------0.50---------------------------------------------------------------------------------------------------------------------------
..TGCAGAGGTTAAAGATTTTGGACA................................................................................................................................................................................................................................2411.001.00---------------------------------------------------------------------1.00------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ACACTTGAAGACTCGCACCACAAGC..2521.001.00----------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TCTCTTTTAGTTTCCTGTGGGCCGC...................................2511.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................AGACTCTGCAGTGCTTCCCACC....................................................................221.000.00---------------------------------------1.00------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CACAGACACTTGAAGACTCGCACCACA.....2721.001.00---------------------------------------------------------------------1.00------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ACACTTGAAGACTCGCACCACAAGCC.2621.001.00---------------------------------------1.00------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................CATCCACAGACACTTGAAGACCC.............231.000.00---------------------------------------------------------1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAC......................................................................................1711.001.00-------------------1.00--------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGTG......................................................................................171.000.00---------------------------------------------------------------------------------------------------1.00------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGCGC...................................................................................201.000.00--1.00-------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGACTGCAT.................................................................................221.000.00------------------------------------------------------------1.00---------------------------------------------------------------------------------------------
.............................TACCAGAACAGAGACACAG..........................................................................................................................................................................................................1911.001.00--------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGAAG....................................................................................191.000.00-----------------------------------------------------------------------------------------------------1.00----------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGAG....................................................................................191.000.00-1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGACACTTGAAGACTCGCACCAC......2321.001.00-------------------------------------------0.50---------------------------------------------------------------------------------------------------------0.50----
...................................................................................................................................................CAGTGCAATGTTAAGACGGCA..................................................................................2111.001.00--------------------------------------1.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGGGTA....................................................................................191.000.00----------------------------------------------------------------------------------------------------------------------1.00-----------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGAAA...................................................................................201.000.00-------------------------------------------------------------------------------------------------------------------1.00--------------------------------------
.......AGGTTAAAGATTTTGGACAGA..............................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------------------------------------------1.00--------------------------------
..............................................................................................................................................................................................................................GACACTTGAAGACTCGCACC........2021.001.00--------------------------------------------------------------------0.50-------------0.50-----------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGGAA...................................................................................201.000.00---1.00------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TCCACAGACACTTGAAGACTCGCACCAC......2821.001.00----------------0.50------------------------------------------------------------------------------------------------------------------0.50----------------------
.......................................................................................................................................................................................................GTTTCCTGTGGGCCGCATC................................1921.001.00--------------------------------------------------------------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CACTTGAAGACTCGCACCACAAA...231.000.00-----------------------------------------------------------------------------------------1.00----------------------------------------------------------------
..............................................................................................................................................................................................................................GACACTTGAAGACTCGCATA........2021.003.00------------------------------1.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CAGTGCAATGTTAAGAGGT....................................................................................191.000.00--------------1.00-------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CACAGACACTTGAAGAC...............1730.670.67------------------------------------------------------------------------------------------------------------------------------------------------------0.33-0.33-
...........................................................................................................................................................................................................................ACAGACACTTGAAGACTCGCACCA.......2420.500.50-----------------------------------------------------------0.50----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................ATCCACAGACACTTGAAGACTCGCA..........2520.500.50--------------------------------------------------------------------------------0.50-------------------------------------------------------------------------
..........................................................................................................................................................................................................TCCTGTGGGCCGCATCCAC.............................1920.500.50-------------------------------------------------------------------------------------------------------------------------------------------------0.50--------
............................................................................................................................................................................................................................CAGACACTTGAAGACTCGCACC........2220.500.50--------------------------------------------------------------------0.50-------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................ACTTGAAGACTCGCACCA.......1820.500.50-------------------------------------------0.50--------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGACACTTGAAGACTCGCACCACAAGCC.2820.500.50----------------0.50-----------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................ACTTGAAGACTCGCACCACAAGCC.2420.500.50-------------------------------------------0.50--------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TCCACAGACACTTGAAGACTC.............2120.500.50----------------0.50-----------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CACTTGAAGACTCGCACCACAAG...2320.500.50----------------------------------------------0.50-----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................ATCCACAGACACTTGAAGACT..............2120.500.50---------------------------------------------------------------------------------------------------------------------------------------------0.50------------
................................................................................................................................................................................................................................CACTTGAAGACTCGCACCA.......1920.500.50----------------------------------------------------------------------------------------------------------------------------------------------0.50-----------
.......................................................................................................................................................................................................................ATCCACAGACACTTGAAGACTC.............2220.500.50--------------------------------------------------------------------------------------------------0.50-------------------------------------------------------
........................................................................................................................................................................................................................TCCACAGACACTTGAAGACTCGCACCACA.....2920.500.50-------------------------------------------------------------------------------------------------------------------------------------------0.50--------------
...........................................................................................................................................................................................................................ACAGACACTTGAAGACTCGCACCAC......2520.500.50-----------------------------------------------------0.50----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CACAGACACTTGAAGACTCG............2020.500.50----------------------------------------------------------------------------------------------------------------------------------------------------0.50-----
.......................................................................................................................................................................................................................ATCCACAGACACTTGAAGACTCGCACC........2720.500.50------------------0.50---------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TCCACAGACACTTGAAGACTCGCACCACAAGC..3220.500.50--------------------------------------------------------------------------------------------------------------------------------------------0.50-------------
.............................................................................................................................................................................................................................AGACACTTGAAGACTCGCA..........1920.500.50----------------0.50-----------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................TTGAAGACTCGCACCAC......1720.500.50-----------------------------------------------------0.50----------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TCCACAGACACTTGAAGACTCGCACC........2620.500.50------------------------------0.50---------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TCCACAGACACTTGAAGACTCGCA..........2420.500.50------------------0.50---------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GACACTTGAAGACTCGCAC.........1920.500.50-------------------------------------------0.50--------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................CTTGAAGACTCGCACCACAAGCC.2320.500.50---------------------------------------------------------------------------------------------------------------------------------------------------0.50------
................................................................................................................................................................................................................................CACTTGAAGACTCGCACCACAAGC..2420.500.50-----------------------------------------------------------------0.50----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CACTTGAAGACTCGCACCACA.....2120.500.50------------------------------------------------------------------------------0.50---------------------------------------------------------------------------
......................................................................................................................................................................................................................CATCCACAGACACTTGAAGACTCG............2420.500.50-----------------------------------------------------------------0.50----------------------------------------------------------------------------------------
..........................................................................................................................................................................................CATCTCTCTTTTAGTTTC..............................................1820.500.50-----------------------------------------------------------------------------------------------------------------------------------------------0.50----------
.............................................................................................................................................................................................................................AGACACTTGAAGACTCGCACCACAAGC..2720.500.50-------------------------------------------0.50--------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ACAGACACTTGAAGACTC.............1830.330.33----------------------0.33-----------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CACAGACACTTGAAGACT..............1830.330.33-------------------------------------------------------------------------------------------------------------------------------------------------------0.33--
......................................................................AATAGGTTTGGCTTCT....................................................................................................................................................................1640.250.25---------------------------------------------------------------------------------------------------------------------------------------------------------0.25

Antisense strand
TATGCAGAGGTTAAAGATTTTGGACAGATTACCAGAACAGAGACACAGGCCCTGGGAACTATTGATGCGTAATAGGTTTGGCTTCTGATATGTGTGATCAAGTTTTTTATTATTTCATGCTTACATTGTTCAGCCTTTGATTACAGTCAGTGCAATGTTAAGACTCTGCAGTGCTTCCCACTAAGACATCTCTCTTTTAGTTTCCTGTGGGCCGCATCCACAGACACTTGAAGACTCGCACCACAAGCCA
..............................................................................................................................................((((.((.((((..((....))..)))).))......(((((((........)))))))...))))..........................................
..............................................................................................................................................143..............................................................208........................................
SizePerfect hitTotal NormPerfect NormSRR040032(GSM532917)
G603N. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040012(GSM532897)
G648N. (cervix)		SRR040024(GSM532909)
G613N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR040042(GSM532927)
G428N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040018(GSM532903)
G701N. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR040028(GSM532913)
G026N. (cervix)		SRR040008(GSM532893)
G727N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029126(GSM416755)
143B. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR040027(GSM532912)
G220T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040037(GSM532922)
G243T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR029127(GSM416756)
A549. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532879(GSM532879)
G659N. (cervix)		SRR040043(GSM532928)
G428T. (cervix)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532886(GSM532886)
G850T. (cervix)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532878(GSM532878)
G691T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM532875(GSM532875)
G547N. (cervix)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191483(GSM715593)
11genomic small RNA (size selected RNA from t. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR040006(GSM532891)
G601N. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		GSM532876(GSM532876)
G547T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR038861(GSM458544)
MM466. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189785
.................................................................................................TCAAGTTTTTTATTAACTG...................................................................................................................................... 194.000.00-------------------4.00--------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................TGCTTACATTGTTCAGAG................................................................................................................... 181.000.00------------------------------------------------------------------------------------------1.00---------------------------------------------------------------
.....................................................................................................................TGCTTACATTGTTCAAGG................................................................................................................... 181.000.00-------------------------------------------------------------------1.00--------------------------------------------------------------------------------------
........................................................................................................................TTACATTGTTCAGCCTTTAGGT............................................................................................................ 221.000.00------------------------------------------------------------------------------------------------------------------------------------1.00---------------------
.................................................................................................TCAAGTTTTTTATTAACC....................................................................................................................................... 181.000.00-------------------1.00--------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TTCAAGTGTCTGTGGATGCGGCCCAC.................. 2620.500.50------------------------------------------------0.50---------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................CAGGAAACTAAAAGAGA........................................... 1730.330.33-----------0.33----------------------------------------------------------------------------------------------------------------------------------------------