ID: uc003tjc.2_intron_3_0_chr7_44001690_r.3p
GENE: POLR2J4(12)
chr7:44001640-44001889-


(2)
AGO1.ip
(3)
AGO2.ip
(3)
BRAIN
(12)
BREAST
(13)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(1)
HELA
(1)
KIDNEY
(3)
LIVER
(2)
OTHER
(27)
SKIN
(1)
XRN.ip

Sense strand
ACAGGAAGGGCTTTCCAAAAACAGAAAATAAATAGCCCGGGCAGAGCCTGGGAGGCAGAGCTGTGCAGGGCACCCGGATGGAGGGCATGAGCAGAGAGATGGGAGGCTGGCCCCAAGGGAAAAAACTGGAGGCCATGGGAGCGGTGTGGTCCAGGGTGGCCTGAGTCCCTGGTGGAGAGGTCACAGGCTGCCCATTCCAGGGGCAACCTGGGCTCCTTGCAGCTGGAGGTGCGGCTGCGGGACGAGACGG
....................................................................................((....)).......(((((...(((((((.((........)))).)))))..(((.((...)).))).(((..(((((...((((.....)).))...)))))..))).)))))...................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAGA.................................................21355.007.3313.00-7.00-6.00-2.001.001.001.00--2.00-1.001.002.00-1.001.00-------1.001.001.00---1.00-1.001.00-1.001.00-1.00--1.001.001.00---1.00--1.001.00--1.00-----------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAGT.................................................21322.007.337.001.00-------1.002.001.00--1.001.00-1.00---1.00------------1.00-----1.00-------1.00--1.001.00--1.00-------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAG..................................................2037.337.330.673.67------0.330.33-------0.330.33---------------------------------------0.67--0.33---0.33-0.33-
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAGAT................................................2236.007.336.00--------------------------------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCATT.................................................2134.002.332.00----------1.00------------1.00--------------------------------------------
......................................................................................ATGAGCAGAGAGATGGGAGTCCG.............................................................................................................................................233.000.00---3.00-----------------------------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCA...................................................1932.332.330.330.67------------------0.33------------------------------------------0.330.33-0.33--
......................................................................................................................................................................................ACAGGCTGCCCATTCCAGAG................................................202.000.002.00--------------------------------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAGACA...............................................2331.007.33------------------------------1.00--------------------------------------
................................................................................................................................................................................GAGGTCACAGGCTGCACCC.......................................................191.000.00-------------------------------------1.00-------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAATTT...............................................2331.002.33-------------------------------------------------1.00-------------------
.....................................................................................................................................CATGGGAGCGGTGTGGTCCAGGGTGGCCTG.......................................................................................3011.001.00--------------------------------------------------------1.00------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCCAT.................................................2131.000.67-1.00-------------------------------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAGTAA...............................................2331.007.33-------1.00-------------------------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAAT.................................................2131.002.33--------1.00------------------------------------------------------------
..............................................................................................................................................................................GAGAGGTCACAGGCTGCCCCC.......................................................211.000.00-----1.00---------------------------------------------------------------
.................................................................................................................................................................................AGGTCACAGGCTGCCCGAC......................................................191.000.00---1.00-----------------------------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAGTA................................................2231.007.33------------------------------------------1.00--------------------------
..........................................................AGCTGTGCAGGGCACCCGGATGGAGGGCACG.................................................................................................................................................................311.000.00---1.00-----------------------------------------------------------------
............................................................................GATGGAGGGCATGAGGGGC...........................................................................................................................................................191.000.00----------------------1.00----------------------------------------------
....................................................................................................................GGGAAAAAACTGGAGTA.....................................................................................................................171.000.00-------------1.00-------------------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAGTAT...............................................2331.007.33-----------------------1.00---------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAT..................................................2031.002.33-------------------------1.00-------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCCAA.................................................2131.000.67--------------------------------1.00------------------------------------
.......................................................................................TGAGCAGAGAGATGGGAGCC...............................................................................................................................................201.000.00---1.00-----------------------------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCCA..................................................2031.000.67--------------------1.00------------------------------------------------
........................................................................................................................................................................................................................................GGCTGCGGGACGAGACGGGGC211.000.00-----------------------------------------------1.00---------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAGC.................................................2131.007.33-1.00-------------------------------------------------------------------
....................................................................................................................GGGAAAAAACTGGAGAAC....................................................................................................................181.000.00-------------1.00-------------------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCCAGTTT...............................................2331.007.33------1.00--------------------------------------------------------------
....................................................................................................................................................................................TCACAGGCTGCCCATTCC....................................................1830.670.67---------------------0.33--------------------------------------0.33--------
......................................................................CACCCGGATGGAGGGCATGAGCAGA...........................................................................................................................................................2520.500.50-----------------------------------------------------------0.50---------
..................................................................................................................................................................GAGTCCCTGGTGGAGAGGTCACAGGCTGC...........................................................2930.330.33--------------------------------------------------------------0.33------
..............................................................................................................................................................................GAGAGGTCACAGGCTGCCCATTC.....................................................2330.330.33-------------------0.33-------------------------------------------------
........................................GCAGAGCCTGGGAGGCAGAG..............................................................................................................................................................................................2050.200.20--------------------------------------------------------------------0.20

Antisense strand
ACAGGAAGGGCTTTCCAAAAACAGAAAATAAATAGCCCGGGCAGAGCCTGGGAGGCAGAGCTGTGCAGGGCACCCGGATGGAGGGCATGAGCAGAGAGATGGGAGGCTGGCCCCAAGGGAAAAAACTGGAGGCCATGGGAGCGGTGTGGTCCAGGGTGGCCTGAGTCCCTGGTGGAGAGGTCACAGGCTGCCCATTCCAGGGGCAACCTGGGCTCCTTGCAGCTGGAGGTGCGGCTGCGGGACGAGACGG
....................................................................................((....)).......(((((...(((((((.((........)))).)))))..(((.((...)).))).(((..(((((...((((.....)).))...)))))..))).)))))...................................................
.................................................................................82....................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189782SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
TAX577742(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
............................................................................................................................................................TGGCCTGAGTCCCTGAGCC........................................................................... 191.000.00-------------------------------------------1.00-------------------------
.................................................GGGAGGCAGAGCTGTCGC....................................................................................................................................................................................... 181.000.00-----1.00---------------------------------------------------------------
....................ACAGAAAATAAATAGATTT................................................................................................................................................................................................................... 191.000.00-----1.00---------------------------------------------------------------
.........................................CAGAGCCTGGGAGGCGTGC.............................................................................................................................................................................................. 191.000.00--------------------------1.00------------------------------------------
....GAAGGGCTTTCCAAAAATA................................................................................................................................................................................................................................... 191.000.00-------------------------------1.00-------------------------------------
............TTCCAAAAACAGAAAAGGG........................................................................................................................................................................................................................... 191.000.00-----1.00---------------------------------------------------------------
..........................................................................TCTGCTCATGCCCTCCATCCG........................................................................................................................................................... 2120.500.50-------0.50-------------------------------------------------------------
................................................................................CATCTCTCTGCTCATGCCCTC..................................................................................................................................................... 2130.330.33-----------------0.33---------------------------------------------------
.......................................AGCTCTGCCTCCCAGGCTCTGCC............................................................................................................................................................................................ 2330.330.33---0.33-----------------------------------------------------------------